Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00061 Brassica carinata HOM05D000724 ORTHO05D012138 1.6e-29 132.1 67 100.0
BraA07t28921Z Brassica rapa HOM05D000724 ORTHO05D012138 1.1e-17 92.8 81 66.7
BraA09t37154Z Brassica rapa HOM05D000724 ORTHO05D012138 1.3e-15 85.9 89 59.6
AL1G60240 Arabidopsis lyrata HOM05D000724 ORTHO05D000755 2.2e-07 58.5 29 93.1
BcaB04g17167 Brassica carinata HOM05D000724 ORTHO05D000755 2.2e-07 58.5 29 93.1
BcaC01g01309 Brassica carinata HOM05D000724 ORTHO05D000755 2.2e-07 58.5 29 93.1
BcaC08g43371 Brassica carinata HOM05D000724 ORTHO05D000755 2.2e-07 58.5 29 93.1
A06p02020 Brassica napus HOM05D000724 ORTHO05D000755 2.2e-07 58.5 29 93.1
A08p02300 Brassica napus HOM05D000724 ORTHO05D000755 2.2e-07 58.5 29 93.1
C03p90460 Brassica napus HOM05D000724 ORTHO05D000755 2.2e-07 58.5 29 93.1
C06p07390 Brassica napus HOM05D000724 ORTHO05D000755 2.2e-07 58.5 29 93.1
BolC3t21370H Brassica oleracea HOM05D000724 ORTHO05D000755 2.2e-07 58.5 29 93.1
BolC6t35828H Brassica oleracea HOM05D000724 ORTHO05D000755 2.2e-07 58.5 29 93.1
BraA06t23418Z Brassica rapa HOM05D000724 ORTHO05D000755 2.2e-07 58.5 29 93.1
BraA08t32275Z Brassica rapa HOM05D000724 ORTHO05D000755 2.2e-07 58.5 29 93.1
Carub.0001s4109 Capsella rubella HOM05D000724 ORTHO05D000755 2.2e-07 58.5 29 93.1
CARHR042280 Cardamine hirsuta HOM05D000724 ORTHO05D000755 2.2e-07 58.5 29 93.1
Thhalv10011238m.g Eutrema salsugineum HOM05D000724 ORTHO05D000755 2.2e-07 58.5 29 93.1
Sp1g38700 Schrenkiella parvula HOM05D000724 ORTHO05D000755 2.2e-07 58.5 29 93.1
Hund19501 Selenicereus undatus HOM05D000724 ORTHO05D000755 2.9e-07 58.2 140 33.6
THA.LOC104817963 Tarenaya hassleriana HOM05D000724 ORTHO05D000755 3.8e-07 57.8 29 89.7
Aa31LG10G2740 Aethionema arabicum HOM05D000724 ORTHO05D000755 4.9e-07 57.4 29 89.7
Ah.10g034940 Amaranthus hybridus HOM05D000724 ORTHO05D000755 6.5e-07 57.0 29 82.8
Ah.16g105870 Amaranthus hybridus HOM05D000724 ORTHO05D000755 6.5e-07 57.0 29 82.8
AT1G52150 Arabidopsis thaliana HOM05D000724 ORTHO05D000755 6.5e-07 57.0 29 89.7
EL10Ac2g04000 Beta vulgaris HOM05D000724 ORTHO05D000755 6.5e-07 57.0 29 82.8
AUR62009262 Chenopodium quinoa HOM05D000724 ORTHO05D000755 6.5e-07 57.0 29 82.8
AUR62042444 Chenopodium quinoa HOM05D000724 ORTHO05D000755 6.5e-07 57.0 29 82.8
AUR62044008 Chenopodium quinoa HOM05D000724 ORTHO05D000755 6.5e-07 57.0 29 82.8
ECA233G5328 Erigeron canadensis HOM05D000724 ORTHO05D000755 1.4e-06 55.8 29 82.8
Glyma.06G086600 Glycine max HOM05D000724 ORTHO05D000755 1.9e-06 55.5 29 79.3
SGA_v2.0_scaffold68G22964 Striga asiatica HOM05D000724 ORTHO05D000755 1.9e-06 55.5 29 82.8
Atru.chr1.3511 Acer truncatum HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
Actinidia21702 Actinidia chinensis HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
Actinidia32702 Actinidia chinensis HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
Ah.01g005710 Amaranthus hybridus HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
arahy.Tifrunner.gnm1.ann1.2NG6S0 Arachis hypogaea HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
arahy.Tifrunner.gnm1.ann1.ES5BWW Arachis hypogaea HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
MSTRG.4746 Avicennia marina HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
MSTRG.9482 Avicennia marina HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
EL10Ac9g22097 Beta vulgaris HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
CANSAT56G0161 Cannabis sativa HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
Cpa.g.sc109.22 Carica papaya HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
Cfa003659 Carpinus fangiana HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
CiPaw.01G232500 Carya illinoinensis HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
CiPaw.02G146500 Carya illinoinensis HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
AUR62022184 Chenopodium quinoa HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
AUR62031889 Chenopodium quinoa HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
Haze_15835 Corylus avellana HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
DCAR_023074 Daucus carota HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
Dinv30447 Davidia involucrata HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
Eucgr.F03066 Eucalyptus grandis HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
Lj9C511T7 Lonicera japonica HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
Lalb_Chr24g0396121 Lupinus albus HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
Lalb_Chr25g0280111 Lupinus albus HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
Manes.11G034600 Manihot esculenta HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
Nn6g35298 Nelumbo nucifera HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
Nn8g39109 Nelumbo nucifera HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
Nitab4.5_0006460g0030 Nicotiana tabacum HOM05D000724 ORTHO05D000755 2.5e-06 55.1 48 58.3
Nitab4.5_0007840g0010 Nicotiana tabacum HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
Phvul.005G166900 Phaseolus vulgaris HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
Potri.001G188800 Populus trichocarpa HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
Potri.003G050100 Populus trichocarpa HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
PGR031G2753 Punica granatum HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
QL05p020467 Quercus lobata HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
Sabra01G0152300 Salix brachista HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
Hund06657 Selenicereus undatus HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
Sc12g0009610 Simmondsia chinensis HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
Sc15g0002080 Simmondsia chinensis HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
SGA_v2.0_scaffold66G22542 Striga asiatica HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
Thecc.09G046200 Theobroma cacao HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
VMungo1080G0694 Vigna mungo HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
GSVIVG01017010001 Vitis vinifera HOM05D000724 ORTHO05D000755 2.5e-06 55.1 29 82.8
Aqoxy7G01459 Aquilegia oxysepala HOM05D000724 ORTHO05D000755 3.2e-06 54.7 29 82.8
ECA232G2903 Erigeron canadensis HOM05D000724 ORTHO05D000755 3.2e-06 54.7 29 82.8
HanXRQChr16g0501201 Helianthus annuus HOM05D000724 ORTHO05D000755 3.2e-06 54.7 29 82.8
Oeu043888.1 Olea europaea HOM05D000724 ORTHO05D000755 3.2e-06 54.7 29 79.3
Oeu063937.1 Olea europaea HOM05D000724 ORTHO05D000755 3.2e-06 54.7 29 79.3
PSO173G0093 Papaver somniferum HOM05D000724 ORTHO05D000755 3.2e-06 54.7 29 82.8
PSO824G0098 Papaver somniferum HOM05D000724 ORTHO05D000755 3.2e-06 54.7 29 82.8
SalBow2G0756 Salvia bowleyana HOM05D000724 ORTHO05D000755 3.2e-06 54.7 29 82.8
Duzib160G0869 Durio zibethinus HOM05D000724 ORTHO05D000755 4.2e-06 54.3 29 79.3
Duzib235G0731 Durio zibethinus HOM05D000724 ORTHO05D000755 4.2e-06 54.3 29 79.3
HanXRQChr02g0050611 Helianthus annuus HOM05D000724 ORTHO05D000755 4.2e-06 54.3 29 79.3
Manes.03G059200 Manihot esculenta HOM05D000724 ORTHO05D000755 4.2e-06 54.3 29 82.8
Manes.16G074600 Manihot esculenta HOM05D000724 ORTHO05D000755 4.2e-06 54.3 29 82.8
Nitab4.5_0010053g0010 Nicotiana tabacum HOM05D000724 ORTHO05D000755 4.2e-06 54.3 29 79.3
Solyc08g066500.4 Solanum lycopersicum HOM05D000724 ORTHO05D000755 4.2e-06 54.3 29 79.3
Sopen08g020320 Solanum pennellii HOM05D000724 ORTHO05D000755 4.2e-06 54.3 29 79.3
PGSC0003DMG401029143 Solanum tuberosum HOM05D000724 ORTHO05D000755 4.2e-06 54.3 29 79.3
PGSC0003DMG402029143 Solanum tuberosum HOM05D000724 ORTHO05D000755 4.2e-06 54.3 29 79.3
Thecc.06G098100 Theobroma cacao HOM05D000724 ORTHO05D000755 4.2e-06 54.3 29 79.3
Actinidia26064 Actinidia chinensis HOM05D000724 ORTHO05D000755 5.5e-06 53.9 29 79.3
Ah.01g021890 Amaranthus hybridus HOM05D000724 ORTHO05D000755 5.5e-06 53.9 29 79.3
MSTRG.25912 Avicennia marina HOM05D000724 ORTHO05D000755 5.5e-06 53.9 29 79.3
CSS0018397 Camellia sinensis var. sinensis HOM05D000724 ORTHO05D000755 5.5e-06 53.9 29 79.3
CiPaw.07G203400 Carya illinoinensis HOM05D000724 ORTHO05D000755 5.5e-06 53.9 29 82.8
Dinv37989 Davidia involucrata HOM05D000724 ORTHO05D000755 5.5e-06 53.9 29 79.3
Migut.A00196 Erythranthe guttata HOM05D000724 ORTHO05D000755 5.5e-06 53.9 29 79.3
HanXRQChr12g0360991 Helianthus annuus HOM05D000724 ORTHO05D000755 5.5e-06 53.9 29 79.3
Lsat_1_v5_gn_5_134441 Lactuca sativa HOM05D000724 ORTHO05D000755 5.5e-06 53.9 29 79.3
Lj3g0009417 Lotus japonicus HOM05D000724 ORTHO05D000755 5.5e-06 53.9 29 79.3
Lalb_Chr08g0243001 Lupinus albus HOM05D000724 ORTHO05D000755 5.5e-06 53.9 29 75.9
Manes.04G133100 Manihot esculenta HOM05D000724 ORTHO05D000755 5.5e-06 53.9 29 79.3
Potri.006G237500 Populus trichocarpa HOM05D000724 ORTHO05D000755 5.5e-06 53.9 29 82.8
SGA_v2.0_scaffold243G44285 Striga asiatica HOM05D000724 ORTHO05D000755 5.5e-06 53.9 29 79.3
TWI12G0681 Tripterygium wilfordii HOM05D000724 ORTHO05D000755 5.5e-06 53.9 29 79.3
ClCG09G000100 Citrullus lanatus HOM05D000724 ORTHO05D000755 7.1e-06 53.5 29 79.3
Ciclev10024891m.g Citrus clementina HOM05D000724 ORTHO05D000755 7.1e-06 53.5 29 79.3
COL.COLO4_20981 Corchorus olitorius HOM05D000724 ORTHO05D000755 7.1e-06 53.5 29 79.3
MELO3C024446.2 Cucumis melo HOM05D000724 ORTHO05D000755 7.1e-06 53.5 29 79.3
CsaV3_7G035370 Cucumis sativus L. HOM05D000724 ORTHO05D000755 7.1e-06 53.5 29 79.3
Dinv27910 Davidia involucrata HOM05D000724 ORTHO05D000755 7.1e-06 53.5 29 82.8
Migut.D01005 Erythranthe guttata HOM05D000724 ORTHO05D000755 7.1e-06 53.5 29 79.3
Migut.I00906 Erythranthe guttata HOM05D000724 ORTHO05D000755 7.1e-06 53.5 29 79.3
Glyma.04G085000 Glycine max HOM05D000724 ORTHO05D000755 7.1e-06 53.5 29 75.9
Gohir.A07G022300 Gossypium hirsutum HOM05D000724 ORTHO05D000755 7.1e-06 53.5 29 79.3
Gohir.D07G025700 Gossypium hirsutum HOM05D000724 ORTHO05D000755 7.1e-06 53.5 29 79.3
Gorai.001G026800 Gossypium raimondii HOM05D000724 ORTHO05D000755 7.1e-06 53.5 29 79.3
HanXRQChr13g0402191 Helianthus annuus HOM05D000724 ORTHO05D000755 7.1e-06 53.5 29 79.3
Lj1g0001383 Lotus japonicus HOM05D000724 ORTHO05D000755 7.1e-06 53.5 29 75.9
MBI04_g06586_MAGBIO Magnolia biondii HOM05D000724 ORTHO05D000755 7.1e-06 53.5 29 79.3
Medtr2g101190 Medicago truncatula HOM05D000724 ORTHO05D000755 7.1e-06 53.5 29 75.9
Nitab4.5_0001755g0110 Nicotiana tabacum HOM05D000724 ORTHO05D000755 7.1e-06 53.5 29 79.3
Oeu050604.1 Olea europaea HOM05D000724 ORTHO05D000755 7.1e-06 53.5 29 79.3
Peaxi162Scf00038g00093 Petunia axillaris HOM05D000724 ORTHO05D000755 7.1e-06 53.5 29 79.3
Phvul.009G110500 Phaseolus vulgaris HOM05D000724 ORTHO05D000755 7.1e-06 53.5 29 75.9
Psat5g297000 Pisum sativum HOM05D000724 ORTHO05D000755 7.1e-06 53.5 29 75.9
Rhsim08G0226600 Rhododendron simsii HOM05D000724 ORTHO05D000755 7.1e-06 53.5 29 79.3
Sed0012296 Sechium edule HOM05D000724 ORTHO05D000755 7.1e-06 53.5 29 79.3
Sed0017246 Sechium edule HOM05D000724 ORTHO05D000755 7.1e-06 53.5 29 79.3
Hund00676 Selenicereus undatus HOM05D000724 ORTHO05D000755 7.1e-06 53.5 29 79.3
THA.LOC104810536 Tarenaya hassleriana HOM05D000724 ORTHO05D000755 7.1e-06 53.5 29 82.8
TPR.G37173 Trifolium pratense HOM05D000724 ORTHO05D000755 7.1e-06 53.5 29 75.9
vmacro18861 Vaccinium macrocarpon HOM05D000724 ORTHO05D000755 7.1e-06 53.5 29 79.3
VMungo1309G0921 Vigna mungo HOM05D000724 ORTHO05D000755 7.1e-06 53.5 29 75.9
Cfa013376 Carpinus fangiana HOM05D000724 ORTHO05D000755 9.3e-06 53.1 29 82.8
Ca_15584_v3 Cicer arietinum L. HOM05D000724 ORTHO05D000755 9.3e-06 53.1 134 31.3
Cc08_g09740 Coffea canephora HOM05D000724 ORTHO05D000755 9.3e-06 53.1 29 75.9
COL.COLO4_30489 Corchorus olitorius HOM05D000724 ORTHO05D000755 9.3e-06 53.1 29 75.9
Haze_21899 Corylus avellana HOM05D000724 ORTHO05D000755 9.3e-06 53.1 29 82.8
Duzib192G0086 Durio zibethinus HOM05D000724 ORTHO05D000755 9.3e-06 53.1 29 75.9
HanXRQChr04g0096011 Helianthus annuus HOM05D000724 ORTHO05D000755 9.3e-06 53.1 29 75.9
HanXRQChr10g0313261 Helianthus annuus HOM05D000724 ORTHO05D000755 9.3e-06 53.1 29 79.3
Lj7C700T1 Lonicera japonica HOM05D000724 ORTHO05D000755 9.3e-06 53.1 29 79.3
Psat1g167760 Pisum sativum HOM05D000724 ORTHO05D000755 9.3e-06 53.1 29 72.4
Potri.018G045100 Populus trichocarpa HOM05D000724 ORTHO05D000755 9.3e-06 53.1 29 79.3
Prupe.1G447100 Prunus persica HOM05D000724 ORTHO05D000755 9.3e-06 53.1 29 79.3
Sabra18G0044500 Salix brachista HOM05D000724 ORTHO05D000755 9.3e-06 53.1 29 79.3
SalBow4G1575 Salvia bowleyana HOM05D000724 ORTHO05D000755 9.3e-06 53.1 29 75.9
Sed0006198 Sechium edule HOM05D000724 ORTHO05D000755 9.3e-06 53.1 29 82.8


User provided reference genes

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