Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC01g00013 Brassica carinata HOM05D002829 ORTHO05D003124 6.9e-126 454.1 253 100.0
C03p74800 Brassica napus HOM05D002829 ORTHO05D003124 6.9e-126 454.1 253 100.0
BolC3t19731H Brassica oleracea HOM05D002829 ORTHO05D003124 4.8e-119 431.4 252 95.6
A08p25820 Brassica napus HOM05D002829 ORTHO05D003124 2.1e-111 406.0 254 90.6
BraA08t34537Z Brassica rapa HOM05D002829 ORTHO05D003124 2.1e-111 406.0 254 90.6
BcaB03g12129 Brassica carinata HOM05D002829 ORTHO05D003124 1.3e-100 370.2 251 86.9
Sp1g24380 Schrenkiella parvula HOM05D002829 ORTHO05D003124 8.7e-97 357.5 253 75.9
BcaB07g32428 Brassica carinata HOM05D002829 ORTHO05D003124 2.5e-91 339.3 256 74.2
BcaC05g26825 Brassica carinata HOM05D002829 ORTHO05D003124 1.2e-90 337.0 252 71.8
BolC5t31417H Brassica oleracea HOM05D002829 ORTHO05D003124 1.2e-90 337.0 252 71.8
C05p27000 Brassica napus HOM05D002829 ORTHO05D003124 1.3e-89 333.6 252 72.6
A09p37870 Brassica napus HOM05D002829 ORTHO05D003124 1.1e-88 330.5 257 71.6
BraA09t39299Z Brassica rapa HOM05D002829 ORTHO05D003124 1.1e-88 330.5 257 71.6
CARHR027680 Cardamine hirsuta HOM05D002829 ORTHO05D003124 5.3e-86 321.6 218 76.6
Thhalv10008463m.g Eutrema salsugineum HOM05D002829 ORTHO05D003124 4.5e-85 318.5 250 68.4
AL1G41730 Arabidopsis lyrata HOM05D002829 ORTHO05D003124 1.9e-83 313.2 222 74.3
Carub.0001s2663 Capsella rubella HOM05D002829 ORTHO05D003124 9.4e-83 310.8 219 74.0
AT1G28190 Arabidopsis thaliana HOM05D002829 ORTHO05D003124 1.0e-81 307.4 225 74.7
Aa31sc50G50 Aethionema arabicum HOM05D002829 ORTHO05D003124 1.1e-67 260.8 213 66.2
THA.LOC104820537 Tarenaya hassleriana HOM05D002829 ORTHO05D003124 8.0e-58 228.0 212 58.0
Atru.chr12.1478 Acer truncatum HOM05D002829 ORTHO05D003124 3.7e-39 166.0 193 50.3
TAR622G0550 Trochodendron aralioides HOM05D002829 ORTHO05D003124 1.8e-38 163.7 184 50.5
Sabra01G0049600 Salix brachista HOM05D002829 ORTHO05D003124 5.4e-38 162.2 181 51.9
FAN07G1465 Fragaria x ananassa HOM05D002829 ORTHO05D003124 7.0e-38 161.8 212 46.7
MD13G1134300 Malus domestica HOM05D002829 ORTHO05D003124 1.6e-37 160.6 206 46.6
Ciclev10029923m.g Citrus clementina HOM05D002829 ORTHO05D003124 2.7e-37 159.8 188 47.9
A01p30880 Brassica napus HOM05D002829 ORTHO05D003124 4.6e-37 159.1 128 65.6
FvH4_4g22140 Fragaria vesca HOM05D002829 ORTHO05D003124 6.0e-37 158.7 212 45.8
FAN12G1147 Fragaria x ananassa HOM05D002829 ORTHO05D003124 6.0e-37 158.7 212 45.8
MBI11_g17276_MAGBIO Magnolia biondii HOM05D002829 ORTHO05D003124 6.0e-37 158.7 208 46.6
Potri.003G160000 Populus trichocarpa HOM05D002829 ORTHO05D003124 6.0e-37 158.7 182 50.5
Potri.001G070700 Populus trichocarpa HOM05D002829 ORTHO05D003124 1.7e-36 157.1 182 51.6
Prupe.1G211200 Prunus persica HOM05D002829 ORTHO05D003124 1.7e-36 157.1 180 48.3
Cpa.g.sc38.55 Carica papaya HOM05D002829 ORTHO05D003124 3.0e-36 156.4 172 51.2
MD16G1144900 Malus domestica HOM05D002829 ORTHO05D003124 3.0e-36 156.4 185 47.6
Thecc.01G239500 Theobroma cacao HOM05D002829 ORTHO05D003124 3.0e-36 156.4 221 44.3
FAN17G0858 Fragaria x ananassa HOM05D002829 ORTHO05D003124 8.6e-36 154.8 214 44.4
Manes.08G099100 Manihot esculenta HOM05D002829 ORTHO05D003124 1.9e-35 153.7 220 42.7
RcHm_v2.0_Chr4g0428381 Rosa chinensis HOM05D002829 ORTHO05D003124 3.3e-35 152.9 195 46.7
Cfa009474 Carpinus fangiana HOM05D002829 ORTHO05D003124 5.6e-35 152.1 211 42.2
TWI18G0126 Tripterygium wilfordii HOM05D002829 ORTHO05D003124 5.6e-35 152.1 219 44.7
Sabra03G0116300 Salix brachista HOM05D002829 ORTHO05D003124 9.5e-35 151.4 199 46.7
Duzib264G0406 Durio zibethinus HOM05D002829 ORTHO05D003124 1.2e-34 151.0 201 45.3
QL03p048302 Quercus lobata HOM05D002829 ORTHO05D003124 2.1e-34 150.2 207 44.9
Duzib147G1098 Durio zibethinus HOM05D002829 ORTHO05D003124 4.7e-34 149.1 221 42.1
Haze_12531 Corylus avellana HOM05D002829 ORTHO05D003124 6.2e-34 148.7 187 44.9
CiPaw.06G111500 Carya illinoinensis HOM05D002829 ORTHO05D003124 2.3e-33 146.7 208 47.1
ClCG10G013080 Citrullus lanatus HOM05D002829 ORTHO05D003124 3.1e-33 146.4 207 42.5
MELO3C026752.2 Cucumis melo HOM05D002829 ORTHO05D003124 3.1e-33 146.4 205 43.4
Gohir.A11G059300 Gossypium hirsutum HOM05D002829 ORTHO05D003124 4.0e-33 146.0 181 46.4
TWI75G0707 Tripterygium wilfordii HOM05D002829 ORTHO05D003124 4.0e-33 146.0 205 44.4
Gohir.D11G063400 Gossypium hirsutum HOM05D002829 ORTHO05D003124 5.2e-33 145.6 181 46.4
Gorai.007G068500 Gossypium raimondii HOM05D002829 ORTHO05D003124 5.2e-33 145.6 199 43.7
CiPaw.05G097800 Carya illinoinensis HOM05D002829 ORTHO05D003124 6.8e-33 145.2 212 42.9
PGR102G0495 Punica granatum HOM05D002829 ORTHO05D003124 6.8e-33 145.2 194 45.4
TWI36G1156 Tripterygium wilfordii HOM05D002829 ORTHO05D003124 3.4e-32 142.9 181 48.1
Oeu011726.1 Olea europaea HOM05D002829 ORTHO05D003124 1.3e-31 141.0 173 45.1
PSO017G0067 Papaver somniferum HOM05D002829 ORTHO05D003124 1.3e-31 141.0 231 40.3
Eucgr.J01660 Eucalyptus grandis HOM05D002829 ORTHO05D003124 2.9e-31 139.8 196 45.4
MBI07_g42014_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D010528 2.9e-31 139.8 174 44.8
ATR0582G260 Amborella trichopoda HOM05D002829 ORTHO05D003124 1.1e-30 137.9 183 44.3
CDE09G0437 Ceratophyllum demersum HOM05D002829 ORTHO05D003124 1.4e-30 137.5 188 44.7
PSO478G2462 Papaver somniferum HOM05D002829 ORTHO05D003124 3.2e-30 136.3 208 42.3
CSS0000234 Camellia sinensis var. sinensis HOM05D002829 ORTHO05D003124 4.1e-30 136.0 214 43.5
CSS0019210 Camellia sinensis var. sinensis HOM05D002829 ORTHO05D003124 4.1e-30 136.0 214 43.5
COL.COLO4_16099 Corchorus olitorius HOM05D002829 ORTHO05D003124 4.1e-30 136.0 175 45.1
Sed0013476 Sechium edule HOM05D002829 ORTHO05D003124 4.1e-30 136.0 173 45.7
MSTRG.8064 Avicennia marina HOM05D002829 ORTHO05D003124 7.0e-30 135.2 199 41.2
Sed0018664 Sechium edule HOM05D002829 ORTHO05D003124 4.6e-29 132.5 203 41.9
CDE02G1175 Ceratophyllum demersum HOM05D002829 ORTHO05D003124 7.8e-29 131.7 183 44.8
MSTRG.439 Avicennia marina HOM05D002829 ORTHO05D003124 1.1e-27 127.9 202 41.1
Migut.K01135 Erythranthe guttata HOM05D002829 ORTHO05D003124 3.3e-27 126.3 198 40.4
Oeu010270.1 Olea europaea HOM05D002829 ORTHO05D003124 5.2e-25 119.0 149 47.0
Lsat_1_v5_gn_4_1720 Lactuca sativa HOM05D002829 ORTHO05D003124 3.4e-24 116.3 194 40.7
HanXRQChr17g0568751 Helianthus annuus HOM05D002829 ORTHO05D003124 9.9e-24 114.8 190 41.1
unitig_699.g19969 Utricularia gibba HOM05D002829 ORTHO05D003124 7.8e-21 105.1 193 35.2
HPP92_000320 Vanilla planifolia HOM05D002829 ORTHO05D003124 1.1e-19 101.3 193 39.4
Oeu039578.1 Olea europaea HOM05D002829 ORTHO05D003124 3.6e-18 96.3 193 35.8
HPP92_006724 Vanilla planifolia HOM05D002829 ORTHO05D003124 3.6e-18 96.3 157 39.5
SEGI_01737 Sequoiadendron giganteum HOM05D002829 ORTHO05D003124 3.1e-17 93.2 196 32.1
Oeu025903.1 Olea europaea HOM05D002829 ORTHO05D003124 4.0e-17 92.8 181 35.4
unitig_747.g21104 Utricularia gibba HOM05D002829 ORTHO05D003124 5.2e-17 92.4 173 33.5
Ciclev10016678m.g Citrus clementina HOM05D002829 ORTHO05D003124 8.9e-17 91.7 208 33.2
HPP92_020117 Vanilla planifolia HOM05D002829 ORTHO05D003124 1.2e-16 91.3 174 35.1
Nn7g36674 Nelumbo nucifera HOM05D002829 ORTHO05D003124 1.5e-16 90.9 197 34.0
CiPaw.14G113800 Carya illinoinensis HOM05D002829 ORTHO05D003124 3.4e-16 89.7 188 33.5
Oeu001330.1 Olea europaea HOM05D002829 ORTHO05D003124 3.4e-16 89.7 185 34.6
Nitab4.5_0000456g0140 Nicotiana tabacum HOM05D002829 ORTHO05D003124 4.4e-16 89.4 176 34.7
TPR.G19349 Trifolium pratense HOM05D002829 ORTHO05D003124 9.9e-16 88.2 197 34.5
Glyma.14G034700 Glycine max HOM05D002829 ORTHO05D003124 1.7e-15 87.4 183 34.4
Oeu030630.1 Olea europaea HOM05D002829 ORTHO05D003124 1.7e-15 87.4 184 34.2
Peaxi162Scf00741g00031 Petunia axillaris HOM05D002829 ORTHO05D003124 1.7e-15 87.4 181 33.7
CSS0010856 Camellia sinensis var. sinensis HOM05D002829 ORTHO05D003124 2.2e-15 87.0 184 34.8
Psat0s3829g0080 Pisum sativum HOM05D002829 ORTHO05D003124 2.2e-15 87.0 178 37.1
SEGI_29550 Sequoiadendron giganteum HOM05D002829 ORTHO05D003124 2.2e-15 87.0 182 34.1
CANSAT54G2047 Cannabis sativa HOM05D002829 ORTHO05D003124 2.9e-15 86.7 199 32.2
SGA_v2.0_scaffold29G12253 Striga asiatica HOM05D002829 ORTHO05D003124 2.9e-15 86.7 159 37.7
TPR.G8464 Trifolium pratense HOM05D002829 ORTHO05D003124 2.9e-15 86.7 204 33.3
COL.COLO4_06524 Corchorus olitorius HOM05D002829 ORTHO05D003124 4.9e-15 85.9 186 35.5
Nitab4.5_0000276g0100 Nicotiana tabacum HOM05D002829 ORTHO05D003124 6.4e-15 85.5 179 33.5
Zm00001eb113580 Zea mays HOM05D002829 ORTHO05D003124 6.4e-15 85.5 181 32.0
ATR0745G071 Amborella trichopoda HOM05D002829 ORTHO05D003124 8.4e-15 85.1 180 35.0
DCAR_002104 Daucus carota HOM05D002829 ORTHO05D003124 8.4e-15 85.1 190 34.7
Atru.chr3.2771 Acer truncatum HOM05D002829 ORTHO05D003124 1.1e-14 84.7 177 34.5
CiPaw.13G151500 Carya illinoinensis HOM05D002829 ORTHO05D003124 1.4e-14 84.3 185 34.1
Lsat_1_v5_gn_2_33560 Lactuca sativa HOM05D002829 ORTHO05D003124 1.4e-14 84.3 181 35.9
Duzib265G0001 Durio zibethinus HOM05D002829 ORTHO05D003124 2.4e-14 83.6 182 35.2
Peaxi162Scf00156g00044 Petunia axillaris HOM05D002829 ORTHO05D003124 2.4e-14 83.6 179 31.3
Thecc.09G249600 Theobroma cacao HOM05D002829 ORTHO05D003124 2.4e-14 83.6 201 33.3
Glyma.02G280100 Glycine max HOM05D002829 ORTHO05D003124 3.2e-14 83.2 184 33.2
Duzib150G0976 Durio zibethinus HOM05D002829 ORTHO05D003124 4.1e-14 82.8 182 35.2
Medtr5g089820 Medicago truncatula HOM05D002829 ORTHO05D003124 4.1e-14 82.8 197 34.0
Rhsim13G0210900 Rhododendron simsii HOM05D002829 ORTHO05D003124 4.1e-14 82.8 163 36.8
Duzib168G0270 Durio zibethinus HOM05D002829 ORTHO05D003124 7.1e-14 82.0 181 35.4
GSVIVG01037265001 Vitis vinifera HOM05D002829 ORTHO05D003124 7.1e-14 82.0 180 32.8
Cc01_g05450 Coffea canephora HOM05D002829 ORTHO05D003124 9.2e-14 81.6 154 36.4
MBI13_g17977_MAGBIO Magnolia biondii HOM05D002829 ORTHO05D003124 9.2e-14 81.6 151 38.4
SalBow6G5405 Salvia bowleyana HOM05D002829 ORTHO05D003124 1.2e-13 81.3 185 35.7
HanXRQChr14g0432431 Helianthus annuus HOM05D002829 ORTHO05D003124 2.7e-13 80.1 182 34.6
Sabra16G0170300 Salix brachista HOM05D002829 ORTHO05D003124 2.7e-13 80.1 190 32.6
Phvul.006G030300 Phaseolus vulgaris HOM05D002829 ORTHO05D003124 3.5e-13 79.7 176 33.5
Lj1P286T7 Lonicera japonica HOM05D002829 ORTHO05D003124 4.6e-13 79.3 152 36.8
Os01g0952900 Oryza sativa ssp. japonica HOM05D002829 ORTHO05D003124 6.0e-13 79.0 190 32.1
Carub.0006s1085 Capsella rubella HOM05D002829 ORTHO05D003124 7.8e-13 78.6 174 35.6
Nn4g22068 Nelumbo nucifera HOM05D002829 ORTHO05D003124 7.8e-13 78.6 65 56.9
Nn3g16206 Nelumbo nucifera HOM05D002829 ORTHO05D003124 1.0e-12 78.2 57 61.4
AT5G12340 Arabidopsis thaliana HOM05D002829 ORTHO05D003124 1.3e-12 77.8 168 35.1
Lsat_1_v5_gn_9_13041 Lactuca sativa HOM05D002829 ORTHO05D003124 1.3e-12 77.8 170 35.3
Duzib170G0965 Durio zibethinus HOM05D002829 ORTHO05D003124 1.7e-12 77.4 176 32.4
Potri.001G276400 Populus trichocarpa HOM05D002829 ORTHO05D003124 1.7e-12 77.4 183 32.2
HPP92_025013 Vanilla planifolia HOM05D002829 ORTHO05D003124 1.7e-12 77.4 199 35.2
Ciclev10017998m.g Citrus clementina HOM05D002829 ORTHO05D003124 2.3e-12 77.0 209 28.7
Phvul.006G030200 Phaseolus vulgaris HOM05D002829 ORTHO05D003124 2.3e-12 77.0 175 33.1
PSO384G3239 Papaver somniferum HOM05D002829 ORTHO05D003124 3.0e-12 76.6 184 31.0
Sabra09G0053800 Salix brachista HOM05D002829 ORTHO05D003124 3.0e-12 76.6 178 31.5
Lj6g0027879 Lotus japonicus HOM05D002829 ORTHO05D003124 3.9e-12 76.3 205 34.1
Zm00001eb286970 Zea mays HOM05D002829 ORTHO05D003124 3.9e-12 76.3 199 31.2
PSO339G3894 Papaver somniferum HOM05D002829 ORTHO05D003124 5.1e-12 75.9 201 29.9
Potri.009G071100 Populus trichocarpa HOM05D002829 ORTHO05D003124 5.1e-12 75.9 183 32.2
TAR369G0681 Trochodendron aralioides HOM05D002829 ORTHO05D003124 5.1e-12 75.9 181 32.6
AL6G23140 Arabidopsis lyrata HOM05D002829 ORTHO05D003124 6.6e-12 75.5 168 34.5
PGR102G2796 Punica granatum HOM05D002829 ORTHO05D003124 8.7e-12 75.1 169 30.8
Sp6g31300 Schrenkiella parvula HOM05D002829 ORTHO05D003124 8.7e-12 75.1 169 32.5
BcaNung03623 Brassica carinata HOM05D002829 ORTHO05D003124 1.9e-11 73.9 169 33.7
BcaNung01195 Brassica carinata HOM05D002829 ORTHO05D003124 2.5e-11 73.6 170 31.8
BcaNung03622 Brassica carinata HOM05D002829 ORTHO05D003124 2.5e-11 73.6 164 34.1
C02p05700 Brassica napus HOM05D002829 ORTHO05D003124 2.5e-11 73.6 170 31.8
BolC2t06514H Brassica oleracea HOM05D002829 ORTHO05D003124 2.5e-11 73.6 170 31.8
C02p05710 Brassica napus HOM05D002829 ORTHO05D003124 3.3e-11 73.2 170 31.8
BolC2t06515H Brassica oleracea HOM05D002829 ORTHO05D003124 3.3e-11 73.2 170 31.8
Sc09g0000990 Simmondsia chinensis HOM05D002829 ORTHO05D003124 5.6e-11 72.4 180 30.6
arahy.Tifrunner.gnm1.ann1.Z08FR7 Arachis hypogaea HOM05D002829 ORTHO05D003124 9.6e-11 71.6 211 32.2
A10p25480 Brassica napus HOM05D002829 ORTHO05D003124 9.6e-11 71.6 175 33.7
C09p64560 Brassica napus HOM05D002829 ORTHO05D003124 9.6e-11 71.6 175 33.7
BolC9t59289H Brassica oleracea HOM05D002829 ORTHO05D003124 9.6e-11 71.6 175 33.7
BraA10t44612Z Brassica rapa HOM05D002829 ORTHO05D003124 9.6e-11 71.6 175 33.7
Zm00001eb347100 Zea mays HOM05D002829 ORTHO05D003124 1.2e-10 71.2 178 32.6
BraA02t05127Z Brassica rapa HOM05D002829 ORTHO05D003124 1.6e-10 70.9 171 33.9
MBI13_g46995_MAGBIO Magnolia biondii HOM05D002829 ORTHO05D003124 1.6e-10 70.9 159 34.6
Manes.01G179200 Manihot esculenta HOM05D002829 ORTHO05D003124 2.1e-10 70.5 177 30.5
Zm00001eb394490 Zea mays HOM05D002829 ORTHO05D003124 2.1e-10 70.5 187 28.9
arahy.Tifrunner.gnm1.ann1.9SET9D Arachis hypogaea HOM05D002829 ORTHO05D003124 2.8e-10 70.1 214 31.8
CDE08G1493 Ceratophyllum demersum HOM05D002829 ORTHO05D003124 3.6e-10 69.7 156 32.1
CsaV3_1G043320 Cucumis sativus L. HOM05D002829 ORTHO05D003124 4.7e-10 69.3 181 33.1
Os03g0356526 Oryza sativa ssp. japonica HOM05D002829 ORTHO05D003124 6.2e-10 68.9 194 30.9
Sed0001383 Sechium edule HOM05D002829 ORTHO05D003124 8.1e-10 68.6 164 37.2
A02p01480 Brassica napus HOM05D002829 ORTHO05D003124 1.1e-09 68.2 171 33.3
MELO3C015127.2 Cucumis melo HOM05D002829 ORTHO05D003124 1.8e-09 67.4 177 33.9
Sed0020414 Sechium edule HOM05D002829 ORTHO05D003124 3.1e-09 66.6 175 31.4
Aa31LG3G14890 Aethionema arabicum HOM05D002829 ORTHO05D003124 4.0e-09 66.2 157 32.5
ClCG03G012660 Citrullus lanatus HOM05D002829 ORTHO05D003124 5.2e-09 65.9 177 33.3
Os05g0385400 Oryza sativa ssp. japonica HOM05D002829 ORTHO05D003124 5.2e-09 65.9 164 31.7
Sed0021871 Sechium edule HOM05D002829 ORTHO05D003124 6.9e-09 65.5 159 34.0
EL10Ac4g10137 Beta vulgaris HOM05D002829 ORTHO05D003124 1.5e-08 64.3 202 28.7
MBI19_g31856_MAGBIO Magnolia biondii HOM05D002829 ORTHO05D003124 1.5e-08 64.3 151 35.1
AUR62000184 Chenopodium quinoa HOM05D002829 ORTHO05D003124 2.0e-08 63.9 174 29.9
Nn7g36102 Nelumbo nucifera HOM05D002829 ORTHO05D003124 2.0e-08 63.9 68 48.5
GSVIVG01008464001 Vitis vinifera HOM05D007478 ORTHO05D001700 2.0e-08 63.9 92 39.1
EL10Ac4g10150 Beta vulgaris HOM05D002829 ORTHO05D003124 5.8e-08 62.4 168 30.4
THA.LOC104824621 Tarenaya hassleriana HOM05D002829 ORTHO05D003124 7.6e-08 62.0 171 31.0
Zm00001eb110740 Zea mays HOM05D002829 ORTHO05D003124 7.6e-08 62.0 162 34.0
Nn5g30140 Nelumbo nucifera HOM05D002829 ORTHO05D003124 1.3e-07 61.2 58 48.3
SEGI_32719 Sequoiadendron giganteum HOM05D001935 ORTHO05D001700 2.9e-07 60.1 173 26.6
PGSC0003DMG400023470 Solanum tuberosum HOM05D002829 ORTHO05D003124 2.9e-07 60.1 134 31.3
Os07g0659300 Oryza sativa ssp. japonica HOM05D002829 ORTHO05D003124 6.4e-07 58.9 147 30.6
Nn6g35490 Nelumbo nucifera HOM05D002829 ORTHO05D003124 4.2e-06 56.2 62 38.7
Manes.13G133100 Manihot esculenta HOM05D001022 ORTHO05D000825 7.1e-06 55.5 106 32.1


User provided reference genes

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