Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g37469 Brassica carinata HOM05D003660 ORTHO05D003415 2.7e-30 134.8 75 100.0
BcaB05g22739 Brassica carinata HOM05D003660 ORTHO05D003415 6.1e-22 107.1 79 81.0
BNapus_Darmor_BZH_scaffold_38p00770 Brassica napus HOM05D003660 ORTHO05D003415 3.0e-21 104.8 79 77.2
AL6G33280 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 6.7e-21 103.6 79 77.2
AT5G22280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 6.7e-21 103.6 79 77.2
BcaB08g36812 Brassica carinata HOM05D003660 ORTHO05D003415 2.0e-20 102.1 77 80.5
BcaC01g06594 Brassica carinata HOM05D003660 ORTHO05D003415 2.0e-20 102.1 79 74.7
BcaC03g13871 Brassica carinata HOM05D003660 ORTHO05D003415 2.0e-20 102.1 79 75.9
C03p12270 Brassica napus HOM05D003660 ORTHO05D003415 2.0e-20 102.1 79 74.7
BcaB01g04718 Brassica carinata HOM05D003660 ORTHO05D003415 2.6e-20 101.7 79 74.7
BolC2t07146H Brassica oleracea HOM05D003660 ORTHO05D003415 3.3e-20 101.3 79 75.9
Carub.0006s2002 Capsella rubella HOM05D003660 ORTHO05D003415 3.3e-20 101.3 79 75.9
Thhalv10015076m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 3.3e-20 101.3 79 73.4
Sp6g22960 Schrenkiella parvula HOM05D003660 ORTHO05D003415 3.3e-20 101.3 79 75.9
A03p10660 Brassica napus HOM05D003660 ORTHO05D003415 7.4e-20 100.1 79 73.4
BraA03t10378Z Brassica rapa HOM05D003660 ORTHO05D003415 7.4e-20 100.1 79 73.4
C02p10760 Brassica napus HOM05D003660 ORTHO05D003415 1.3e-19 99.4 79 74.7
Aa31LG1G13260 Aethionema arabicum HOM05D003660 ORTHO05D003415 7.0e-18 93.6 78 69.2
Thhalv10010953m.g Eutrema salsugineum HOM05D003660 ORTHO05D003415 7.7e-17 90.1 79 65.8
THA.LOC104810930 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 7.7e-17 90.1 79 67.1
BcaB05g22254 Brassica carinata HOM05D003660 ORTHO05D003415 1.7e-16 89.0 69 79.7
CSS0013947 Camellia sinensis var. sinensis HOM05D003660 ORTHO05D003415 3.2e-15 84.7 87 55.2
Aa31LG4G13780 Aethionema arabicum HOM05D003660 ORTHO05D003415 4.2e-15 84.3 79 60.8
Carub.0005s1000 Capsella rubella HOM05D003660 ORTHO05D003415 4.2e-15 84.3 79 63.3
CARHR104590 Cardamine hirsuta HOM05D003660 ORTHO05D003415 4.2e-15 84.3 80 61.2
Actinidia35475 Actinidia chinensis HOM05D003660 ORTHO05D003415 1.2e-14 82.8 82 56.1
THA.LOC104799557 Tarenaya hassleriana HOM05D003660 ORTHO05D003415 1.2e-14 82.8 79 62.0
Peaxi162Scf00224g00520 Petunia axillaris HOM05D003660 ORTHO05D003415 1.6e-14 82.4 87 54.0
Nn6g34777 Nelumbo nucifera HOM05D003660 ORTHO05D003415 2.1e-14 82.0 87 54.0
AL5G22410 Arabidopsis lyrata HOM05D003660 ORTHO05D003415 2.7e-14 81.6 79 62.0
AT3G44280 Arabidopsis thaliana HOM05D003660 ORTHO05D003415 2.7e-14 81.6 79 60.8
A06p22070 Brassica napus HOM05D003660 ORTHO05D003415 2.7e-14 81.6 79 60.8
Nitab4.5_0001135g0080 Nicotiana tabacum HOM05D003660 ORTHO05D003415 8.0e-14 80.1 82 54.9
Solyc11g068760.2 Solanum lycopersicum HOM05D003660 ORTHO05D003415 8.0e-14 80.1 87 51.7
Sopen11g027470 Solanum pennellii HOM05D003660 ORTHO05D003415 8.0e-14 80.1 87 51.7
Rhsim01G0202600 Rhododendron simsii HOM05D003660 ORTHO05D003415 1.0e-13 79.7 80 56.2
Thecc.09G277300 Theobroma cacao HOM05D003660 ORTHO05D003415 1.0e-13 79.7 80 56.2
vmacro14331 Vaccinium macrocarpon HOM05D003660 ORTHO05D003415 1.0e-13 79.7 80 57.5
Gorai.006G113800 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.4e-13 79.3 80 56.2
TAR633G2283 Trochodendron aralioides HOM05D003660 ORTHO05D003415 1.8e-13 79.0 87 52.9
Atru.chr3.3157 Acer truncatum HOM05D003660 ORTHO05D003415 2.3e-13 78.6 80 55.0
Gohir.A09G097300 Gossypium hirsutum HOM05D003660 ORTHO05D003415 2.3e-13 78.6 80 55.0
TAR623G0029 Trochodendron aralioides HOM05D003660 ORTHO05D003415 2.3e-13 78.6 87 52.9
Duzib170G1097 Durio zibethinus HOM05D000010 ORTHO05D005236 3.0e-13 78.2 87 52.9
BolC3t13700H Brassica oleracea HOM05D003660 ORTHO05D003415 4.0e-13 77.8 131 45.0
CiPaw.14G096800 Carya illinoinensis HOM05D003660 ORTHO05D003415 4.0e-13 77.8 82 54.9
COL.COLO4_04567 Corchorus olitorius HOM05D003660 ORTHO05D003415 4.0e-13 77.8 80 55.0
Gorai.009G083400 Gossypium raimondii HOM05D003660 ORTHO05D003415 5.2e-13 77.4 79 55.7
Prupe.6G138900 Prunus persica HOM05D003660 ORTHO05D003415 6.8e-13 77.0 80 53.8
Ciclev10029624m.g Citrus clementina HOM05D003660 ORTHO05D003415 8.8e-13 76.6 80 55.0
BraA06t25297Z Brassica rapa HOM05D003660 ORTHO05D003415 1.2e-12 76.3 81 58.0
Carub.0333s0001 Capsella rubella HOM05D003660 ORTHO05D003415 1.2e-12 76.3 75 61.3
Cc01_g08660 Coffea canephora HOM05D003660 ORTHO05D003415 1.2e-12 76.3 79 55.7
Gohir.A05G078900 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.2e-12 76.3 79 55.7
Cpa.g.sc195.36 Carica papaya HOM05D003660 ORTHO05D003415 1.5e-12 75.9 80 56.2
C03p69380 Brassica napus HOM05D003660 ORTHO05D003415 2.0e-12 75.5 79 58.2
Gohir.D09G097100 Gossypium hirsutum HOM05D003660 ORTHO05D003415 2.0e-12 75.5 80 55.0
TAR636G3190 Trochodendron aralioides HOM05D003660 ORTHO05D003415 2.0e-12 75.5 87 51.7
Manes.04G000300 Manihot esculenta HOM05D003660 ORTHO05D003415 2.6e-12 75.1 80 53.8
Hma1.2p1_1178F.1_g264370 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 7.5e-12 73.6 82 52.4
Hma1.2p1_2789F.1_g328565 Hydrangea macrophylla HOM05D003660 ORTHO05D003415 7.5e-12 73.6 82 52.4
PSO339G2942 Papaver somniferum HOM05D003660 ORTHO05D003415 1.3e-11 72.8 80 53.8
PSO801G0667 Papaver somniferum HOM05D003660 ORTHO05D003415 1.3e-11 72.8 80 53.8
RcHm_v2.0_Chr5g0047201 Rosa chinensis HOM05D003660 ORTHO05D003415 1.3e-11 72.8 80 53.8
Hund18786 Selenicereus undatus HOM05D003660 ORTHO05D003415 1.3e-11 72.8 87 49.4
MSTRG.17695 Avicennia marina HOM05D003660 ORTHO05D003415 2.2e-11 72.0 87 47.1
FvH4_3g25870 Fragaria vesca HOM05D003660 ORTHO05D003415 2.2e-11 72.0 80 53.8
FAN21G0895 Fragaria x ananassa HOM05D003660 ORTHO05D003415 2.2e-11 72.0 80 53.8
FAN25G0104 Fragaria x ananassa HOM05D003660 ORTHO05D003415 2.2e-11 72.0 80 53.8
Lj3g0024971 Lotus japonicus HOM05D003660 ORTHO05D003415 2.8e-11 71.6 87 49.4
Sc12g0004740 Simmondsia chinensis HOM05D003660 ORTHO05D003415 2.8e-11 71.6 87 47.1
HPP92_009784 Vanilla planifolia HOM05D003660 ORTHO05D003415 2.8e-11 71.6 87 50.6
Phvul.005G121700 Phaseolus vulgaris HOM05D003660 ORTHO05D003415 3.7e-11 71.2 80 51.2
PGR004G0692 Punica granatum HOM05D003660 ORTHO05D003415 3.7e-11 71.2 80 51.2
Glyma.13G314500 Glycine max HOM05D003660 ORTHO05D003415 4.8e-11 70.9 87 49.4
VMungo1080G1056 Vigna mungo HOM05D003660 ORTHO05D003415 4.8e-11 70.9 87 49.4
MD11G1171800 Malus domestica HOM05D003660 ORTHO05D003415 8.3e-11 70.1 80 51.2
CANSAT54G1844 Cannabis sativa HOM05D003660 ORTHO05D003415 1.1e-10 69.7 85 52.9
MBI01_g04518_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 1.1e-10 69.7 87 47.1
MD03G1151200 Malus domestica HOM05D003660 ORTHO05D003415 1.4e-10 69.3 80 51.2
Prupe.7G099100 Prunus persica HOM05D003660 ORTHO05D003415 1.4e-10 69.3 85 47.1
ClCG10G018570 Citrullus lanatus HOM05D003660 ORTHO05D003415 2.4e-10 68.6 87 47.1
Aqoxy4G02700 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 3.1e-10 68.2 82 51.2
CDE04G3260 Ceratophyllum demersum HOM05D003660 ORTHO05D003415 3.1e-10 68.2 87 49.4
Potri.004G200200 Populus trichocarpa HOM05D003660 ORTHO05D003415 3.1e-10 68.2 80 51.2
Sp5g16990 Schrenkiella parvula HOM05D003660 ORTHO05D003415 3.1e-10 68.2 46 73.9
Duzib093G1675 Durio zibethinus HOM05D003660 ORTHO05D003415 4.1e-10 67.8 87 46.0
Hund20939 Selenicereus undatus HOM05D003660 ORTHO05D003415 4.1e-10 67.8 87 46.0
MBI17_g39787_MAGBIO Magnolia biondii HOM05D003660 ORTHO05D003415 5.3e-10 67.4 82 47.6
Manes.08G030600 Manihot esculenta HOM05D003660 ORTHO05D003415 5.3e-10 67.4 87 46.0
SalBow3G1900 Salvia bowleyana HOM05D003660 ORTHO05D003415 5.3e-10 67.4 82 48.8
Glyma.12G186952 Glycine max HOM05D003660 ORTHO05D003415 7.0e-10 67.0 87 47.1
Potri.006G206100 Populus trichocarpa HOM05D003660 ORTHO05D003415 7.0e-10 67.0 90 46.7
MSTRG.12378 Avicennia marina HOM05D003660 ORTHO05D003415 9.1e-10 66.6 87 48.3
CiPaw.10G014700 Carya illinoinensis HOM05D003660 ORTHO05D003415 9.1e-10 66.6 87 44.8
Aqoxy2G01022 Aquilegia oxysepala HOM05D003660 ORTHO05D003415 1.2e-09 66.2 79 49.4
Dinv22800 Davidia involucrata HOM05D003660 ORTHO05D003415 1.6e-09 65.9 58 55.2
Gohir.A09G137200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.6e-09 65.9 80 48.8
Gorai.006G151200 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.6e-09 65.9 80 48.8
RcHm_v2.0_Chr3g0475141 Rosa chinensis HOM05D003660 ORTHO05D003415 1.6e-09 65.9 86 45.3
Thecc.05G099700 Theobroma cacao HOM05D003660 ORTHO05D003415 1.6e-09 65.9 87 46.0
CsaV3_6G038470 Cucumis sativus L. HOM05D003660 ORTHO05D003415 2.0e-09 65.5 80 48.8
MD12G1033100 Malus domestica HOM05D003660 ORTHO05D003415 2.0e-09 65.5 85 43.5
MELO3C014510.2 Cucumis melo HOM05D000010 ORTHO05D005236 2.7e-09 65.1 80 48.8
MD14G1033900 Malus domestica HOM05D003660 ORTHO05D003415 2.7e-09 65.1 85 44.7
Sed0020241 Sechium edule HOM05D003660 ORTHO05D003415 3.5e-09 64.7 80 48.8
SGA_v2.0_scaffold7G03991 Striga asiatica HOM05D003660 ORTHO05D003415 3.5e-09 64.7 87 47.1
Zm00001eb304510 Zea mays HOM05D003660 ORTHO05D003415 3.5e-09 64.7 81 45.7
ClCG02G022340 Citrullus lanatus HOM05D003660 ORTHO05D003415 4.5e-09 64.3 80 48.8
Os03g0836500 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 5.9e-09 63.9 79 45.6
Zm00001eb211110 Zea mays HOM05D003660 ORTHO05D003415 5.9e-09 63.9 79 44.3
ATR0772G050 Amborella trichopoda HOM05D003660 ORTHO05D003415 7.7e-09 63.5 75 49.3
Medtr2g086880 Medicago truncatula HOM05D000010 ORTHO05D005236 7.7e-09 63.5 87 44.8
Oeu035577.1 Olea europaea HOM05D003660 ORTHO05D003415 7.7e-09 63.5 87 46.0
Lalb_Chr14g0376021 Lupinus albus HOM05D003660 ORTHO05D003415 1.0e-08 63.2 82 45.1
BolC3t19199H Brassica oleracea HOM05D003660 ORTHO05D003415 1.3e-08 62.8 101 45.5
CANSAT64G0684 Cannabis sativa HOM05D003660 ORTHO05D003415 1.3e-08 62.8 80 45.0
FAN14G4527 Fragaria x ananassa HOM05D003660 ORTHO05D003415 1.7e-08 62.4 57 56.1
Eucgr.K02602 Eucalyptus grandis HOM05D003660 ORTHO05D003415 2.2e-08 62.0 80 45.0
FAN05G5646 Fragaria x ananassa HOM05D003660 ORTHO05D003415 2.2e-08 62.0 57 54.4
FAN11G1383 Fragaria x ananassa HOM05D003660 ORTHO05D003415 3.8e-08 61.2 51 62.7
Gohir.D05G081800 Gossypium hirsutum HOM05D003660 ORTHO05D003415 5.0e-08 60.8 79 48.1
Potri.016G073500 Populus trichocarpa HOM05D003660 ORTHO05D003415 5.0e-08 60.8 89 41.6
ECA248G2122 Erigeron canadensis HOM05D003660 ORTHO05D003415 6.5e-08 60.5 81 49.4
FAN05G5661 Fragaria x ananassa HOM05D003660 ORTHO05D003415 6.5e-08 60.5 57 52.6
Migut.D02421 Erythranthe guttata HOM05D003660 ORTHO05D003415 8.5e-08 60.1 87 42.5
FAN02G2975 Fragaria x ananassa HOM05D003660 ORTHO05D003415 8.5e-08 60.1 57 52.6
Lsat_1_v5_gn_1_57561 Lactuca sativa HOM05D003660 ORTHO05D003415 8.5e-08 60.1 81 49.4
Rhsim03G0067700 Rhododendron simsii HOM05D003660 ORTHO05D003415 1.5e-07 59.3 91 44.0
Actinidia06171 Actinidia chinensis HOM05D003660 ORTHO05D003415 2.5e-07 58.5 80 45.0
Migut.D02405 Erythranthe guttata HOM05D003660 ORTHO05D003415 2.5e-07 58.5 80 45.0
Migut.N02469 Erythranthe guttata HOM05D003660 ORTHO05D003415 2.5e-07 58.5 86 38.4
Os07g0250300 Oryza sativa ssp. japonica HOM05D003660 ORTHO05D003415 3.2e-07 58.2 81 45.7
BraA02t05648Z Brassica rapa HOM05D003660 ORTHO05D003415 4.2e-07 57.8 52 69.2
Sabra04G0135300 Salix brachista HOM05D003660 ORTHO05D003415 4.2e-07 57.8 96 42.7
ECA233G4994 Erigeron canadensis HOM05D003660 ORTHO05D003415 5.5e-07 57.4 85 42.4
Sabra16G0076300 Salix brachista HOM05D003660 ORTHO05D003415 7.2e-07 57.0 62 50.0
Psat7g186360 Pisum sativum HOM05D003660 ORTHO05D003415 9.4e-07 56.6 80 41.2
Gohir.A11G318200 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.2e-06 56.2 80 45.0
Gohir.D11G337400 Gossypium hirsutum HOM05D003660 ORTHO05D003415 1.2e-06 56.2 80 45.0
Gorai.007G367400 Gossypium raimondii HOM05D003660 ORTHO05D003415 1.2e-06 56.2 80 45.0
Lj3g0015124 Lotus japonicus HOM05D003660 ORTHO05D003415 1.2e-06 56.2 80 46.2
SEGI_28618 Sequoiadendron giganteum HOM05D003660 ORTHO05D003415 1.2e-06 56.2 79 43.0
unitig_22.g6156 Utricularia gibba HOM05D003660 ORTHO05D003415 1.6e-06 55.8 83 42.2
arahy.Tifrunner.gnm1.ann1.PLL1TV Arachis hypogaea HOM05D003660 ORTHO05D003415 2.1e-06 55.5 58 53.4
HanXRQChr01g0024911 Helianthus annuus HOM05D003660 ORTHO05D003415 2.1e-06 55.5 81 45.7
Zm00001eb242920 Zea mays HOM05D003660 ORTHO05D003415 2.7e-06 55.1 84 36.9
Ca_01643_v3 Cicer arietinum L. HOM05D000010 ORTHO05D005236 3.6e-06 54.7 54 55.6
Eucgr.J00533 Eucalyptus grandis HOM05D003660 ORTHO05D003415 4.7e-06 54.3 83 41.0
Lalb_Chr19g0136331 Lupinus albus HOM05D003660 ORTHO05D003415 4.7e-06 54.3 80 42.5
TWI74G0792 Tripterygium wilfordii HOM05D003660 ORTHO05D003415 8.0e-06 53.5 88 37.5


User provided reference genes

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