Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g37376 Brassica carinata HOM05D004879 ORTHO05D008271 7.8e-135 483.8 245 100.0
BcaB08g37377 Brassica carinata HOM05D004879 ORTHO05D008271 7.8e-135 483.8 245 100.0
BcaC06g34908 Brassica carinata HOM05D004879 ORTHO05D008271 1.7e-126 456.1 246 95.1
BolC7t42723H Brassica oleracea HOM05D004879 ORTHO05D008271 1.7e-126 456.1 246 95.1
C07p21890 Brassica napus HOM05D004879 ORTHO05D008271 3.9e-126 454.9 246 94.7
C07p21910 Brassica napus HOM05D004879 ORTHO05D008271 3.9e-126 454.9 246 94.7
A07p14910 Brassica napus HOM05D004879 ORTHO05D008271 5.6e-125 451.1 246 93.9
BraA07t29233Z Brassica rapa HOM05D004879 ORTHO05D008271 7.3e-125 450.7 246 93.9
BcaC06g34909 Brassica carinata HOM05D004879 ORTHO05D008271 4.5e-122 441.4 246 93.1
AT1G21840 Arabidopsis thaliana HOM05D004879 ORTHO05D008271 1.1e-115 420.2 239 87.0
Carub.0001s2129 Capsella rubella HOM05D004879 ORTHO05D008271 1.5e-114 416.4 245 84.9
AL1G35040 Arabidopsis lyrata HOM05D004879 ORTHO05D008271 2.0e-114 416.0 230 89.1
Thhalv10009605m.g Eutrema salsugineum HOM05D004879 ORTHO05D008271 2.6e-114 415.6 245 85.7
Sp1g19390 Schrenkiella parvula HOM05D004879 ORTHO05D008271 1.3e-113 413.3 239 85.8
CARHR022120 Cardamine hirsuta HOM05D004879 ORTHO05D008271 1.3e-108 396.7 234 84.6
Aa31LG7G5930 Aethionema arabicum HOM05D004879 ORTHO05D008271 2.3e-102 375.9 244 77.0
QL01p020549 Quercus lobata HOM05D004879 ORTHO05D008271 3.6e-95 352.1 225 73.8
Haze_14485 Corylus avellana HOM05D004879 ORTHO05D008271 7.9e-95 350.9 243 70.4
Cfa007603 Carpinus fangiana HOM05D004879 ORTHO05D008271 3.0e-94 349.0 243 70.8
Dinv15026 Davidia involucrata HOM05D004879 ORTHO05D008271 3.9e-94 348.6 226 71.7
CiPaw.13G145200 Carya illinoinensis HOM05D004879 ORTHO05D008271 1.5e-93 346.7 239 69.0
Potri.001G224400 Populus trichocarpa HOM05D004879 ORTHO05D008271 3.3e-93 345.5 238 66.8
Lj1P989T20 Lonicera japonica HOM05D004879 ORTHO05D008271 5.7e-93 344.7 243 67.5
Cpa.g.sc36.59 Carica papaya HOM05D004879 ORTHO05D008271 2.2e-92 342.8 222 73.0
Gorai.013G107000 Gossypium raimondii HOM05D004879 ORTHO05D008271 2.8e-92 342.4 224 70.1
Ciclev10002295m.g Citrus clementina HOM05D004879 ORTHO05D008271 4.8e-92 341.7 224 70.5
Sabra16G0133100 Salix brachista HOM05D004879 ORTHO05D008271 4.8e-92 341.7 238 67.2
Nn7g37079 Nelumbo nucifera HOM05D004879 ORTHO05D008271 6.3e-92 341.3 235 70.2
Gohir.D03G062100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 8.2e-92 340.9 224 69.6
Manes.01G175400 Manihot esculenta HOM05D004879 ORTHO05D008271 1.4e-91 340.1 224 70.1
Peaxi162Scf00192g00042 Petunia axillaris HOM05D004879 ORTHO05D008271 2.4e-91 339.3 226 70.4
Duzib041G0713 Durio zibethinus HOM05D004879 ORTHO05D008271 3.1e-91 339.0 239 65.7
Solyc03g031430.1 Solanum lycopersicum HOM05D004879 ORTHO05D008271 3.1e-91 339.0 224 71.4
Nitab4.5_0005379g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 5.3e-91 338.2 226 70.8
DCAR_018145 Daucus carota HOM05D004879 ORTHO05D008271 9.1e-91 337.4 224 69.2
Sopen03g005320 Solanum pennellii HOM05D004879 ORTHO05D008271 1.2e-90 337.0 224 71.0
Phvul.008G205100 Phaseolus vulgaris HOM05D004879 ORTHO05D008271 2.0e-90 336.3 233 68.7
Cc00_g20630 Coffea canephora HOM05D004879 ORTHO05D008271 2.6e-90 335.9 247 66.0
Gohir.A02G109100 Gossypium hirsutum HOM05D004879 ORTHO05D008271 4.5e-90 335.1 224 69.2
Lalb_Chr04g0249461 Lupinus albus HOM05D004879 ORTHO05D008271 4.5e-90 335.1 228 69.3
Psat0s2829g0160 Pisum sativum HOM05D004879 ORTHO05D008271 1.0e-89 334.0 227 69.6
Actinidia07011 Actinidia chinensis HOM05D004879 ORTHO05D008271 1.7e-89 333.2 226 71.2
Nitab4.5_0000832g0030 Nicotiana tabacum HOM05D004879 ORTHO05D008271 1.7e-89 333.2 226 69.9
Psat0s4349g0080 Pisum sativum HOM05D004879 ORTHO05D008271 1.7e-89 333.2 227 69.6
PGR102G1558 Punica granatum HOM05D004879 ORTHO05D008271 1.7e-89 333.2 230 67.0
PGSC0003DMG400024255 Solanum tuberosum HOM05D004879 ORTHO05D008271 1.7e-89 333.2 224 69.6
CAN.G1097.5 Capsicum annuum HOM05D004879 ORTHO05D008271 2.9e-89 332.4 226 69.0
Medtr5g088570 Medicago truncatula HOM05D004879 ORTHO05D008271 2.9e-89 332.4 227 69.6
PSO384G4586 Papaver somniferum HOM05D004879 ORTHO05D008271 2.9e-89 332.4 229 68.6
PSO339G6668 Papaver somniferum HOM05D004879 ORTHO05D008271 3.8e-89 332.0 229 67.7
TWI31G0278 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 6.5e-89 331.3 228 68.0
VMungo0647G0171 Vigna mungo HOM05D004879 ORTHO05D008271 6.5e-89 331.3 228 68.4
Rhsim13G0203600 Rhododendron simsii HOM05D004879 ORTHO05D008271 8.5e-89 330.9 223 70.0
RcHm_v2.0_Chr6g0250811 Rosa chinensis HOM05D004879 ORTHO05D008271 8.5e-89 330.9 228 68.0
FvH4_2g00490 Fragaria vesca HOM05D004879 ORTHO05D008271 1.1e-88 330.5 228 67.5
TWI79G1014 Tripterygium wilfordii HOM05D004879 ORTHO05D008271 1.1e-88 330.5 241 65.1
RcHm_v2.0_Chr6g0250481 Rosa chinensis HOM05D004879 ORTHO05D008271 1.9e-88 329.7 228 67.1
Glyma.14G039400 Glycine max HOM05D004879 ORTHO05D008271 2.5e-88 329.3 224 68.3
TPR.G14628 Trifolium pratense HOM05D004879 ORTHO05D008271 2.5e-88 329.3 227 68.7
Glyma.02G276400 Glycine max HOM05D004879 ORTHO05D008271 4.2e-88 328.6 224 68.8
MBI13_g10954_MAGBIO Magnolia biondii HOM05D004879 ORTHO05D008271 5.5e-88 328.2 224 68.8
Sed0013542 Sechium edule HOM05D004879 ORTHO05D008271 5.5e-88 328.2 224 69.2
AUR62000245 Chenopodium quinoa HOM05D004879 ORTHO05D008271 7.2e-88 327.8 234 66.2
Aqoxy1G01328 Aquilegia oxysepala HOM05D004879 ORTHO05D008271 1.2e-87 327.0 239 65.7
unitig_37.g12512 Utricularia gibba HOM05D004879 ORTHO05D008271 1.6e-87 326.6 237 65.0
LjContig00564g0012926 Lotus japonicus HOM05D004879 ORTHO05D008271 2.1e-87 326.2 228 68.0
Ca_06172_v3 Cicer arietinum L. HOM05D004879 ORTHO05D008271 3.6e-87 325.5 227 67.0
Migut.F00393 Erythranthe guttata HOM05D004879 ORTHO05D008271 3.6e-87 325.5 240 66.7
Eucgr.B03769 Eucalyptus grandis HOM05D004879 ORTHO05D008271 3.6e-87 325.5 241 65.6
Sc06g0004840 Simmondsia chinensis HOM05D004879 ORTHO05D008271 3.6e-87 325.5 226 67.7
CsaV3_2G007030 Cucumis sativus L. HOM05D004879 ORTHO05D008271 3.9e-86 322.0 222 68.0
CDE10G1192 Ceratophyllum demersum HOM05D004879 ORTHO05D008271 5.1e-86 321.6 224 68.3
MELO3C004190.2 Cucumis melo HOM05D004879 ORTHO05D008271 6.7e-86 321.2 222 68.9
COL.COLO4_35490 Corchorus olitorius HOM05D004879 ORTHO05D008271 8.8e-86 320.9 246 63.8
ECA240G2819 Erigeron canadensis HOM05D004879 ORTHO05D008271 1.5e-85 320.1 227 64.3
SGA_v2.0_scaffold2G01091 Striga asiatica HOM05D004879 ORTHO05D008271 1.5e-85 320.1 226 68.6
Os02g0168000 Oryza sativa ssp. japonica HOM05D004879 ORTHO05D008271 3.3e-85 318.9 241 64.3
CANSAT54G0046 Cannabis sativa HOM05D004879 ORTHO05D008271 9.7e-85 317.4 232 67.7
ClCG02G014970 Citrullus lanatus HOM05D004879 ORTHO05D008271 2.2e-84 316.2 222 68.0
ATR0782G197 Amborella trichopoda HOM05D004879 ORTHO05D008271 2.8e-84 315.8 224 66.5
EL10Ac4g10052 Beta vulgaris HOM05D004879 ORTHO05D008271 2.8e-84 315.8 224 64.3
FAN24G3181 Fragaria x ananassa HOM05D004879 ORTHO05D008271 2.8e-84 315.8 222 66.2
CSS0042269 Camellia sinensis var. sinensis HOM05D004879 ORTHO05D008271 3.7e-84 315.5 233 64.4
HPP92_011765 Vanilla planifolia HOM05D004879 ORTHO05D008271 9.1e-83 310.8 245 62.0
Zm00001eb232950 Zea mays HOM05D004879 ORTHO05D008271 2.6e-82 309.3 236 62.7
MD10G1003100 Malus domestica HOM05D004879 ORTHO05D008271 5.9e-82 308.1 272 57.7
FAN27G1110 Fragaria x ananassa HOM05D004879 ORTHO05D008271 2.1e-79 299.7 216 64.8
Prupe.8G030900 Prunus persica HOM05D004879 ORTHO05D008271 1.4e-78 297.0 265 57.4
Atru.chr3.2942 Acer truncatum HOM05D004879 ORTHO05D008271 1.2e-74 283.9 205 64.4
MSTRG.8775 Avicennia marina HOM05D004879 ORTHO05D008271 4.2e-72 275.4 230 62.2
SEGI_07822 Sequoiadendron giganteum HOM05D004879 ORTHO05D008271 4.7e-71 271.9 223 58.3
FAN06G1945 Fragaria x ananassa HOM05D004879 ORTHO05D008271 1.8e-70 270.0 195 65.1
SalBow4G0907 Salvia bowleyana HOM05D004879 ORTHO05D008271 6.7e-70 268.1 197 64.0
MD12G1125200 Malus domestica HOM05D000005 ORTHO05D000012 1.3e-68 263.8 220 60.0
Hma1.2p1_1843F.1_g305050 Hydrangea macrophylla HOM05D004879 ORTHO05D008271 1.4e-62 243.8 179 67.0
Mapoly0075s0047 Marchantia polymorpha HOM05D004879 ORTHO05D008271 2.3e-62 243.0 227 52.4
SMO137G0182 Selaginella moellendorffii HOM05D004879 ORTHO05D008271 1.2e-61 240.7 230 54.8
MD12G1125400 Malus domestica HOM05D004879 ORTHO05D008271 4.1e-59 232.3 184 63.0
Thecc.08G138700 Theobroma cacao HOM05D004879 ORTHO05D008271 7.7e-58 228.0 149 69.8
arahy.Tifrunner.gnm1.ann1.V07RCD Arachis hypogaea HOM05D004879 ORTHO05D008271 2.8e-55 219.5 241 51.5
Pp3c21_1390 Physcomitrium patens HOM05D004879 ORTHO05D008271 1.0e-54 217.6 238 50.0
arahy.Tifrunner.gnm1.ann1.WGUK12 Arachis hypogaea HOM05D004879 ORTHO05D008271 3.0e-54 216.1 234 50.0
HPP92_011772 Vanilla planifolia HOM05D004879 ORTHO05D008271 8.3e-52 208.0 155 63.9
RcHm_v2.0_Chr1g0323071 Rosa chinensis HOM05D004879 ORTHO05D008271 3.0e-46 189.5 137 62.8
CBR_g70735 Chara braunii HOM05D004879 ORTHO05D008271 5.2e-46 188.7 270 40.0
RcHm_v2.0_Chr1g0322261 Rosa chinensis HOM05D004879 ORTHO05D008271 4.1e-43 179.1 124 64.5
Oeu030259.1 Olea europaea HOM05D004879 ORTHO05D008271 5.9e-42 175.3 243 42.0
SHI10553 Sapria himalayana HOM05D004879 ORTHO05D008271 1.5e-40 170.6 234 39.3
arahy.Tifrunner.gnm1.ann1.4BAK6K Arachis hypogaea HOM05D004879 ORTHO05D009754 1.9e-40 170.2 199 48.2
GSVIVG01037361001 Vitis vinifera HOM05D004879 ORTHO05D008271 5.2e-38 162.2 227 41.0
Actinidia37185 Actinidia chinensis HOM05D004879 ORTHO05D008271 4.9e-36 155.6 195 46.2
CBR_g27954 Chara braunii HOM05D004879 ORTHO05D008271 8.1e-31 138.3 172 44.8
MCO04G443 Micromonas commoda HOM05D004879 ORTHO05D008271 4.0e-30 136.0 262 35.9
RcHm_v2.0_Chr1g0322441 Rosa chinensis HOM05D004879 ORTHO05D008271 7.8e-26 121.7 80 66.2
FAN24G2371 Fragaria x ananassa HOM05D004879 ORTHO05D000038 1.4e-22 110.9 110 50.0
RcHm_v2.0_Chr1g0322591 Rosa chinensis HOM05D004879 ORTHO05D008271 6.6e-17 92.0 61 65.6
RcHm_v2.0_Chr1g0322271 Rosa chinensis HOM05D004879 ORTHO05D008271 7.3e-16 88.6 57 68.4
arahy.Tifrunner.gnm1.ann1.0GE5DD Arachis hypogaea HOM05D004879 ORTHO05D008271 1.8e-14 84.0 126 38.9
RcHm_v2.0_Chr1g0322461 Rosa chinensis HOM05D004879 ORTHO05D008271 1.7e-12 77.4 56 66.1
RcHm_v2.0_Chr1g0322581 Rosa chinensis HOM05D004879 ORTHO05D008271 2.9e-12 76.6 64 56.2
RcHm_v2.0_Chr1g0322541 Rosa chinensis HOM05D004879 ORTHO05D008271 5.1e-09 65.9 50 58.0
PRCOL_00002215 Prasinoderma coloniale HOM05D005590 ORTHO05D007084 6.6e-09 65.5 215 24.2
arahy.Tifrunner.gnm1.ann1.4Q1DLP Arachis hypogaea HOM05D004879 ORTHO05D008271 1.5e-08 64.3 47 55.3
C05p20820 Brassica napus HOM05D006717 ORTHO05D008139 4.8e-07 59.3 30 86.7
BolC5t30781H Brassica oleracea HOM05D006717 ORTHO05D008139 6.2e-07 58.9 30 86.7
Medtr5g088615 Medicago truncatula HOM05D004879 ORTHO05D008271 1.4e-06 57.8 39 61.5
unitig_46.g18777 Utricularia gibba HOM05D004879 ORTHO05D425869 5.3e-06 55.8 39 66.7


User provided reference genes

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