Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g37374 Brassica carinata HOM05D009121 ORTHO05D001888 3.0e-85 318.5 169 100.0
C08p48520 Brassica napus HOM05D009121 ORTHO05D001888 2.2e-80 302.4 169 94.1
A09p64670 Brassica napus HOM05D009121 ORTHO05D001888 3.8e-80 301.6 169 93.5
BolC8t52391H Brassica oleracea HOM05D009121 ORTHO05D001888 8.5e-80 300.4 169 93.5
BraA09t41825Z Brassica rapa HOM05D009121 ORTHO05D001888 3.2e-79 298.5 169 92.9
BcaC05g24955 Brassica carinata HOM05D009121 ORTHO05D001888 3.8e-72 275.0 169 84.0
Sp1g09470 Schrenkiella parvula HOM05D009121 ORTHO05D001888 2.1e-70 269.2 169 80.5
BolC5t29657H Brassica oleracea HOM05D009121 ORTHO05D001888 3.6e-70 268.5 169 81.1
C05p09130 Brassica napus HOM05D009121 ORTHO05D001888 7.9e-70 267.3 169 80.5
A06p07570 Brassica napus HOM05D009121 ORTHO05D001888 2.3e-69 265.8 169 81.1
BraA06t23959Z Brassica rapa HOM05D009121 ORTHO05D001888 2.3e-69 265.8 169 81.1
Thhalv10008932m.g Eutrema salsugineum HOM05D009121 ORTHO05D001888 6.7e-69 264.2 169 78.7
BcaC07g38628 Brassica carinata HOM05D009121 ORTHO05D001888 3.3e-68 261.9 167 80.2
AL1G21700 Arabidopsis lyrata HOM05D009121 ORTHO05D001888 6.5e-64 247.7 169 74.6
Carub.0001s1032 Capsella rubella HOM05D009121 ORTHO05D001888 3.2e-63 245.4 167 74.9
AT1G10770 Arabidopsis thaliana HOM05D009121 ORTHO05D001888 4.2e-63 245.0 169 72.8
CARHR010990 Cardamine hirsuta HOM05D009121 ORTHO05D001888 3.6e-62 241.9 169 72.2
BcaC07g38589 Brassica carinata HOM05D009121 ORTHO05D001888 6.3e-59 231.1 167 73.7
THA.LOC104809586 Tarenaya hassleriana HOM05D009121 ORTHO05D001888 1.1e-50 203.8 168 63.1
Aa31LG2G9780 Aethionema arabicum HOM05D009121 ORTHO05D001888 2.7e-49 199.1 169 60.4
THA.LOC104819351 Tarenaya hassleriana HOM05D009121 ORTHO05D001888 2.5e-47 192.6 170 60.6
AL2G15820 Arabidopsis lyrata HOM05D009121 ORTHO05D001888 4.0e-45 185.3 169 58.0
Carub.0002s0459 Capsella rubella HOM05D009121 ORTHO05D001888 5.2e-45 184.9 151 62.9
AT1G60760 Arabidopsis thaliana HOM05D009121 ORTHO05D001888 1.5e-44 183.3 169 58.6
Sp2g04000 Schrenkiella parvula HOM05D009121 ORTHO05D001888 1.1e-42 177.2 168 56.0
Thhalv10024081m.g Eutrema salsugineum HOM05D009121 ORTHO05D001888 8.6e-40 167.5 167 55.7
Aa31LG1G4060 Aethionema arabicum HOM05D009121 ORTHO05D001888 3.6e-38 162.2 143 58.0
CARHR051730 Cardamine hirsuta HOM05D009121 ORTHO05D001888 4.7e-38 161.8 169 54.4
C09p21480 Brassica napus HOM05D009121 ORTHO05D001888 9.2e-34 147.5 151 51.0
BolC9t55053H Brassica oleracea HOM05D009121 ORTHO05D001888 9.2e-34 147.5 151 51.0
A09p17300 Brassica napus HOM05D009121 ORTHO05D001888 3.5e-33 145.6 168 47.6
BraA09t37359Z Brassica rapa HOM05D009121 ORTHO05D001888 3.5e-33 145.6 168 47.6
BcaNung05350 Brassica carinata HOM05D009121 ORTHO05D001888 5.9e-33 144.8 168 47.6
BolC8t49030H Brassica oleracea HOM05D009121 ORTHO05D001888 3.3e-31 139.0 94 76.6
C08p13970 Brassica napus HOM05D009121 ORTHO05D001888 1.4e-21 107.1 71 78.9
Sp3g05640 Schrenkiella parvula HOM05D005742 ORTHO05D001888 3.6e-14 82.4 136 34.6
Sed0022593 Sechium edule HOM05D008070 ORTHO05D001888 3.6e-14 82.4 132 31.8
Carub.0001s2294 Capsella rubella HOM05D008070 ORTHO05D001888 1.8e-13 80.1 134 34.3
Haze_12224 Corylus avellana HOM05D008070 ORTHO05D001888 3.1e-13 79.3 133 35.3
THA.LOC104802706 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 3.1e-13 79.3 139 36.0
AL1G37150 Arabidopsis lyrata HOM05D008070 ORTHO05D001888 4.0e-13 79.0 153 32.0
Thhalv10022426m.g Eutrema salsugineum HOM05D005742 ORTHO05D001888 4.0e-13 79.0 147 31.3
BcaB03g14151 Brassica carinata HOM05D008070 ORTHO05D001888 5.2e-13 78.6 159 34.6
BcaC06g35034 Brassica carinata HOM05D008070 ORTHO05D001888 8.9e-13 77.8 131 36.6
AT1G23350 Arabidopsis thaliana HOM05D008070 ORTHO05D001888 1.5e-12 77.0 153 32.0
Ciclev10032926m.g Citrus clementina HOM05D008070 ORTHO05D001888 1.5e-12 77.0 165 27.9
AL3G17770 Arabidopsis lyrata HOM05D005742 ORTHO05D001888 2.0e-12 76.6 133 31.6
BolC7t42570H Brassica oleracea HOM05D008070 ORTHO05D001888 2.0e-12 76.6 131 35.9
CARHR023800 Cardamine hirsuta HOM05D008070 ORTHO05D001888 4.4e-12 75.5 146 33.6
Cfa009190 Carpinus fangiana HOM05D008070 ORTHO05D001888 5.8e-12 75.1 152 32.9
MELO3C010682.2 Cucumis melo HOM05D008070 ORTHO05D001888 5.8e-12 75.1 155 31.6
THA.LOC104822159 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 7.5e-12 74.7 153 32.0
BcaC09g47911 Brassica carinata HOM05D005742 ORTHO05D001888 9.9e-12 74.3 153 31.4
BolC1t05594H Brassica oleracea HOM05D005742 ORTHO05D001888 9.9e-12 74.3 153 31.4
BraA07t29145Z Brassica rapa HOM05D008070 ORTHO05D001888 1.3e-11 73.9 158 32.3
ClCG08G017790 Citrullus lanatus HOM05D008070 ORTHO05D001888 1.3e-11 73.9 133 33.8
Sp1g20800 Schrenkiella parvula HOM05D008070 ORTHO05D001888 1.3e-11 73.9 157 33.1
AT3G36659 Arabidopsis thaliana HOM05D005742 ORTHO05D001888 1.7e-11 73.6 138 32.6
CARHR081260 Cardamine hirsuta HOM05D005742 ORTHO05D001888 1.7e-11 73.6 133 30.1
Aa31LG5G17240 Aethionema arabicum HOM05D005742 ORTHO05D001888 2.2e-11 73.2 157 29.9
Carub.0003s0617 Capsella rubella HOM05D005742 ORTHO05D001888 3.7e-11 72.4 139 33.1
Aa31LG7G7380 Aethionema arabicum HOM05D008070 ORTHO05D001888 4.9e-11 72.0 154 32.5
BcaB03g11935 Brassica carinata HOM05D008070 ORTHO05D001888 4.9e-11 72.0 159 34.0
BNapus_Darmor_BZH_scaffold_118p00010 Brassica napus HOM05D005742 ORTHO05D001888 4.9e-11 72.0 153 30.7
BraA01t04423Z Brassica rapa HOM05D005742 ORTHO05D001888 4.9e-11 72.0 153 30.7
BcaB07g32331 Brassica carinata HOM05D008070 ORTHO05D001888 6.4e-11 71.6 151 33.1
BcaC05g30549 Brassica carinata HOM05D005742 ORTHO05D001888 6.4e-11 71.6 133 31.6
BcaC05g26248 Brassica carinata HOM05D008070 ORTHO05D001888 1.1e-10 70.9 151 33.1
C05p22620 Brassica napus HOM05D008070 ORTHO05D001888 1.1e-10 70.9 151 33.1
BolC5t30961H Brassica oleracea HOM05D008070 ORTHO05D001888 1.1e-10 70.9 151 33.1
CiPaw.05G184900 Carya illinoinensis HOM05D008070 ORTHO05D001888 1.1e-10 70.9 152 28.9
Thhalv10008931m.g Eutrema salsugineum HOM05D008070 ORTHO05D001888 1.4e-10 70.5 158 32.9
THA.LOC104822979 Tarenaya hassleriana HOM05D008070 ORTHO05D001888 1.4e-10 70.5 155 31.0
QL03p058730 Quercus lobata HOM05D008070 ORTHO05D001888 4.1e-10 68.9 145 30.3
CsaV3_2G024840 Cucumis sativus L. HOM05D008070 ORTHO05D001888 7.1e-10 68.2 157 29.9
Manes.12G025200 Manihot esculenta HOM05D008070 ORTHO05D001888 1.2e-09 67.4 161 28.6
Nn3g21713 Nelumbo nucifera HOM05D005742 ORTHO05D001888 1.6e-09 67.0 145 30.3
BcaC07g39196 Brassica carinata HOM05D008070 ORTHO05D001888 2.7e-09 66.2 129 34.9
A08p28210 Brassica napus HOM05D008070 ORTHO05D001888 2.7e-09 66.2 129 34.9
BolC8t49825H Brassica oleracea HOM05D008070 ORTHO05D001888 2.7e-09 66.2 129 34.9
BraA08t34752Z Brassica rapa HOM05D008070 ORTHO05D001888 2.7e-09 66.2 129 34.9
TAR362G0759 Trochodendron aralioides HOM05D005742 ORTHO05D001888 2.7e-09 66.2 161 32.3
TAR629G1731 Trochodendron aralioides HOM05D008070 ORTHO05D001888 2.7e-09 66.2 163 28.2
C08p21860 Brassica napus HOM05D008070 ORTHO05D001888 3.5e-09 65.9 129 34.9
COL.COLO4_24233 Corchorus olitorius HOM05D008070 ORTHO05D001888 6.0e-09 65.1 166 30.1
CsaV3_5G031330 Cucumis sativus L. HOM05D008070 ORTHO05D001888 6.0e-09 65.1 157 28.7
Atru.chr11.2085 Acer truncatum HOM05D008070 ORTHO05D001888 1.3e-08 63.9 162 26.5
Atru.chr11.2086 Acer truncatum HOM05D008070 ORTHO05D001888 1.3e-08 63.9 162 26.5
MELO3C011974.2 Cucumis melo HOM05D008070 ORTHO05D001888 1.3e-08 63.9 152 25.7
Eucgr.H02532 Eucalyptus grandis HOM05D008070 ORTHO05D001888 1.3e-08 63.9 162 25.3
THA.LOC104818886 Tarenaya hassleriana HOM05D005742 ORTHO05D001888 1.7e-08 63.5 134 31.3
CiPaw.06G069400 Carya illinoinensis HOM05D008070 ORTHO05D001888 2.3e-08 63.2 161 29.8
QL03p058723 Quercus lobata HOM05D010056 ORTHO05D001888 3.0e-08 62.8 135 26.7
Haze_01291 Corylus avellana HOM05D005742 ORTHO05D001888 3.9e-08 62.4 138 31.9
QL04p082607 Quercus lobata HOM05D010056 ORTHO05D001888 3.9e-08 62.4 164 25.6
TAR633G1530 Trochodendron aralioides HOM05D005742 ORTHO05D001888 6.6e-08 61.6 144 32.6
Hma1.2p1_0013F.1_g008650 Hydrangea macrophylla HOM05D005742 ORTHO05D001888 8.6e-08 61.2 162 30.2
Manes.13G026900 Manihot esculenta HOM05D008070 ORTHO05D001888 8.6e-08 61.2 163 28.2
vmacro08056 Vaccinium macrocarpon HOM05D001258 ORTHO05D000158 8.6e-08 61.2 153 29.4
DCAR_027000 Daucus carota HOM05D005742 ORTHO05D001888 1.5e-07 60.5 141 29.1
Gohir.D02G058775 Gossypium hirsutum HOM05D005742 ORTHO05D001888 1.5e-07 60.5 156 30.1
Gorai.005G066500 Gossypium raimondii HOM05D005742 ORTHO05D001888 1.5e-07 60.5 156 30.1
RcHm_v2.0_Chr4g0424831 Rosa chinensis HOM05D005742 ORTHO05D001888 4.3e-07 58.9 146 28.8
Sed0022116 Sechium edule HOM05D008070 ORTHO05D001888 4.3e-07 58.9 160 30.6
Cfa015324 Carpinus fangiana HOM05D005742 ORTHO05D001888 5.6e-07 58.5 152 28.9
Rhsim04G0235100 Rhododendron simsii HOM05D005742 ORTHO05D001888 5.6e-07 58.5 141 27.7
Ciclev10007183m.g Citrus clementina HOM05D005742 ORTHO05D001888 9.5e-07 57.8 153 27.5
BraA09t39622Z Brassica rapa HOM05D008070 ORTHO05D001888 1.2e-06 57.4 114 33.3
Nn4g25584 Nelumbo nucifera HOM05D005742 ORTHO05D001888 1.2e-06 57.4 145 29.7
Dinv44293 Davidia involucrata HOM05D005742 ORTHO05D001888 1.6e-06 57.0 143 27.3
A09p41290 Brassica napus HOM05D008070 ORTHO05D001888 2.1e-06 56.6 114 33.3
CANSAT78G0521 Cannabis sativa HOM05D005742 ORTHO05D001888 2.1e-06 56.6 153 28.1
Duzib052G0264 Durio zibethinus HOM05D005742 ORTHO05D001888 2.8e-06 56.2 171 26.3
CiPaw.02G075500 Carya illinoinensis HOM05D005742 ORTHO05D001888 4.7e-06 55.5 141 27.0
Duzib151G0239 Durio zibethinus HOM05D005742 ORTHO05D001888 4.7e-06 55.5 166 27.1
Oeu032017.1 Olea europaea HOM05D005742 ORTHO05D001888 4.7e-06 55.5 146 25.3
Carub.0003s0619 Capsella rubella HOM05D005742 ORTHO05D001888 6.2e-06 55.1 125 31.2
Cpa.g.sc69.89 Carica papaya HOM05D008070 ORTHO05D001888 8.1e-06 54.7 166 26.5


User provided reference genes

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