Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g37298 Brassica carinata HOM05D003672 ORTHO05D004121 2.3e-188 662.1 356 100.0
A10p28610 Brassica napus HOM05D003672 ORTHO05D004121 1.1e-137 493.8 360 81.4
C09p68900 Brassica napus HOM05D003672 ORTHO05D004121 4.8e-133 478.4 359 81.1
BolC9t59636H Brassica oleracea HOM05D003672 ORTHO05D004121 4.8e-133 478.4 359 81.1
BraA10t44910Z Brassica rapa HOM05D003672 ORTHO05D004121 4.0e-132 475.3 359 81.3
Thhalv10013089m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 1.8e-119 433.3 375 72.8
Sp6g34930 Schrenkiella parvula HOM05D003672 ORTHO05D004121 3.3e-118 429.1 375 71.5
AL6G18360 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 2.2e-117 426.4 373 72.1
Carub.0006s0690 Capsella rubella HOM05D003672 ORTHO05D004121 5.3e-116 421.8 368 71.5
CARHR205170 Cardamine hirsuta HOM05D003672 ORTHO05D004121 3.9e-111 405.6 383 69.7
AT5G08010 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 8.8e-111 404.4 377 70.3
BcaB08g37300 Brassica carinata HOM05D003672 ORTHO05D004121 1.8e-92 343.6 255 81.2
AT5G61040 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 7.7e-91 338.2 372 61.0
AL8G37700 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 1.9e-89 333.6 375 60.8
Aa31LG3G18520 Aethionema arabicum HOM05D003672 ORTHO05D004121 5.5e-89 332.0 367 58.9
THA.LOC104819401 Tarenaya hassleriana HOM05D003672 ORTHO05D004121 1.2e-88 330.9 385 56.1
Carub.0008s2173 Capsella rubella HOM05D003672 ORTHO05D004121 2.1e-88 330.1 374 61.8
Thhalv10003875m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 4.5e-83 312.4 371 59.3
BraA03t13796Z Brassica rapa HOM05D003672 ORTHO05D004121 1.0e-79 301.2 373 56.0
Sp2g24340 Schrenkiella parvula HOM05D003672 ORTHO05D004121 1.3e-74 284.3 369 54.5
BcaC06g33181 Brassica carinata HOM05D003672 ORTHO05D004121 8.6e-74 281.6 368 56.0
C07p44780 Brassica napus HOM05D003672 ORTHO05D004121 1.2e-70 271.2 368 54.9
BolC7t45002H Brassica oleracea HOM05D003672 ORTHO05D004121 2.9e-69 266.5 371 54.2
A03p46740 Brassica napus HOM05D003672 ORTHO05D004121 3.7e-69 266.2 339 55.8
Aa31LG11G2260 Aethionema arabicum HOM05D003672 ORTHO05D004121 8.3e-69 265.0 351 54.4
CARHR274750 Cardamine hirsuta HOM05D003672 ORTHO05D004121 1.5e-62 244.2 365 51.0
Ciclev10019089m.g Citrus clementina HOM05D003672 ORTHO05D004121 3.7e-61 239.6 412 44.4
Duzib084G0362 Durio zibethinus HOM05D003672 ORTHO05D004121 3.9e-58 229.6 400 44.2
Atru.chr9.577 Acer truncatum HOM05D003672 ORTHO05D004121 5.0e-58 229.2 392 41.8
COL.COLO4_06856 Corchorus olitorius HOM05D003672 ORTHO05D004121 1.4e-55 221.1 414 42.0
Thecc.03G101900 Theobroma cacao HOM05D003672 ORTHO05D004121 1.5e-54 217.6 408 41.7
Duzib205G1655 Durio zibethinus HOM05D003672 ORTHO05D004121 5.4e-52 209.1 411 39.7
Potri.015G057600 Populus trichocarpa HOM05D003672 ORTHO05D004121 3.5e-51 206.5 417 39.6
Manes.14G085800 Manihot esculenta HOM05D003672 ORTHO05D004121 1.3e-50 204.5 408 40.4
Manes.06G084700 Manihot esculenta HOM05D003672 ORTHO05D004121 2.3e-50 203.8 393 40.2
Actinidia18990 Actinidia chinensis HOM05D003672 ORTHO05D004121 1.1e-49 201.4 396 40.7
Cpa.g.sc94.57 Carica papaya HOM05D003672 ORTHO05D004121 3.3e-49 199.9 392 39.8
TWI60G1197 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 1.6e-48 197.6 410 39.8
Dinv22781 Davidia involucrata HOM05D003672 ORTHO05D004121 8.1e-48 195.3 418 39.0
Actinidia35037 Actinidia chinensis HOM05D003672 ORTHO05D004121 1.4e-47 194.5 385 41.0
CANSAT80G1081 Cannabis sativa HOM05D003672 ORTHO05D004121 5.2e-47 192.6 412 38.1
Lj1g0027425 Lotus japonicus HOM05D003672 ORTHO05D004121 1.5e-46 191.0 404 38.4
Prupe.5G205200 Prunus persica HOM05D003672 ORTHO05D004121 2.0e-46 190.7 412 40.0
FvH4_5g13830 Fragaria vesca HOM05D003672 ORTHO05D004121 9.9e-46 188.3 448 36.8
FAN18G3332 Fragaria x ananassa HOM05D003672 ORTHO05D004121 4.9e-45 186.0 448 36.4
Gorai.001G077200 Gossypium raimondii HOM05D003672 ORTHO05D004121 4.9e-45 186.0 395 38.7
QL10p019524 Quercus lobata HOM05D003672 ORTHO05D004121 4.9e-45 186.0 411 36.7
FAN13G1740 Fragaria x ananassa HOM05D003672 ORTHO05D004121 1.1e-44 184.9 451 35.7
Gohir.D07G073000 Gossypium hirsutum HOM05D003672 ORTHO05D004121 1.1e-44 184.9 395 38.7
RcHm_v2.0_Chr7g0183101 Rosa chinensis HOM05D003672 ORTHO05D004121 2.4e-44 183.7 413 37.8
Nn3g17451 Nelumbo nucifera HOM05D003672 ORTHO05D004121 9.2e-44 181.8 405 39.5
Lj5C102T25 Lonicera japonica HOM05D003672 ORTHO05D004121 1.2e-43 181.4 384 37.5
Gohir.A07G068500 Gossypium hirsutum HOM05D003672 ORTHO05D004121 2.1e-43 180.6 395 38.7
Glyma.04G162600 Glycine max HOM05D003672 ORTHO05D004121 7.8e-43 178.7 390 37.4
Haze_07732 Corylus avellana HOM05D003672 ORTHO05D004121 2.3e-42 177.2 426 36.9
FAN08G3423 Fragaria x ananassa HOM05D003672 ORTHO05D004121 3.9e-42 176.4 470 35.1
Gohir.A12G182700 Gossypium hirsutum HOM05D003672 ORTHO05D004121 3.9e-42 176.4 404 37.4
MD14G1212000 Malus domestica HOM05D003672 ORTHO05D004121 3.9e-42 176.4 327 40.7
Cfa019341 Carpinus fangiana HOM05D003672 ORTHO05D004121 5.1e-42 176.0 399 36.8
Gorai.008G199200 Gossypium raimondii HOM05D003672 ORTHO05D004121 6.6e-42 175.6 404 38.1
Ca_14345_v3 Cicer arietinum L. HOM05D003672 ORTHO05D004121 1.9e-41 174.1 413 35.6
Psat2g037720 Pisum sativum HOM05D003672 ORTHO05D004121 1.9e-41 174.1 403 35.0
TPR.G12189 Trifolium pratense HOM05D003672 ORTHO05D004121 1.9e-41 174.1 406 34.7
Glyma.06G203700 Glycine max HOM05D003672 ORTHO05D004121 4.3e-41 172.9 396 34.8
Nn4g23428 Nelumbo nucifera HOM05D003672 ORTHO05D004121 7.3e-41 172.2 405 36.3
Oeu061164.2 Olea europaea HOM05D003672 ORTHO05D004121 1.2e-40 171.4 363 36.9
Nitab4.5_0009401g0050 Nicotiana tabacum HOM05D003672 ORTHO05D004121 2.1e-40 170.6 391 36.3
Hma1.2p1_0060F.1_g033090 Hydrangea macrophylla HOM05D003672 ORTHO05D004121 2.8e-40 170.2 419 35.8
Nitab4.5_0001485g0140 Nicotiana tabacum HOM05D003672 ORTHO05D004121 4.7e-40 169.5 389 37.0
TWI81G0716 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 6.2e-40 169.1 405 36.0
Peaxi162Scf00201g00329 Petunia axillaris HOM05D003672 ORTHO05D004121 8.1e-40 168.7 386 35.2
Rhsim12G0148200 Rhododendron simsii HOM05D003672 ORTHO05D004121 8.1e-40 168.7 377 37.9
Sabra15G0083600 Salix brachista HOM05D003672 ORTHO05D004121 8.1e-40 168.7 413 36.8
arahy.Tifrunner.gnm1.ann1.N0JE3Z Arachis hypogaea HOM05D003672 ORTHO05D004121 1.1e-39 168.3 403 34.5
arahy.Tifrunner.gnm1.ann1.SKH1UB Arachis hypogaea HOM05D003672 ORTHO05D004121 1.8e-39 167.5 403 35.0
TAR629G1848 Trochodendron aralioides HOM05D003672 ORTHO05D004121 2.4e-39 167.2 408 36.5
Sed0002350 Sechium edule HOM05D003672 ORTHO05D004121 3.1e-39 166.8 389 36.0
arahy.Tifrunner.gnm1.ann1.03S8MC Arachis hypogaea HOM05D003672 ORTHO05D004121 4.0e-39 166.4 407 33.2
Eucgr.B00592 Eucalyptus grandis HOM05D003672 ORTHO05D004121 4.0e-39 166.4 406 35.2
arahy.Tifrunner.gnm1.ann1.R6LVKU Arachis hypogaea HOM05D003672 ORTHO05D004121 6.8e-39 165.6 407 32.7
GSVIVG01012221001 Vitis vinifera HOM05D003672 ORTHO05D004121 6.8e-39 165.6 354 39.0
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 5.8e-38 162.5 398 35.9
Sopen03g034170 Solanum pennellii HOM05D003672 ORTHO05D004121 7.6e-38 162.2 389 36.0
TWI15G0151 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 7.6e-38 162.2 410 35.9
Oeu044870.1 Olea europaea HOM05D003672 ORTHO05D004121 1.3e-37 161.4 367 36.5
PGR083G2392 Punica granatum HOM05D003672 ORTHO05D004121 2.2e-37 160.6 368 37.0
Migut.D01656 Erythranthe guttata HOM05D003672 ORTHO05D004121 3.8e-37 159.8 367 35.4
Dinv17414 Davidia involucrata HOM05D003672 ORTHO05D004121 6.4e-37 159.1 353 38.8
Cc00_g14840 Coffea canephora HOM05D003672 ORTHO05D004121 4.2e-36 156.4 390 34.9
CiPaw.11G053900 Carya illinoinensis HOM05D003672 ORTHO05D004121 5.4e-36 156.0 405 33.3
Lsat_1_v5_gn_4_111040 Lactuca sativa HOM05D003672 ORTHO05D004121 5.4e-36 156.0 276 39.1
Solyc03g115100.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 5.4e-36 156.0 389 35.0
MSTRG.22965 Avicennia marina HOM05D003672 ORTHO05D004121 7.1e-36 155.6 388 35.3
MELO3C017225.2 Cucumis melo HOM05D003672 ORTHO05D004121 7.1e-36 155.6 437 33.6
Phvul.010G007200 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 7.1e-36 155.6 369 33.9
TAR629G0952 Trochodendron aralioides HOM05D003672 ORTHO05D004121 7.1e-36 155.6 303 39.6
VMungo0331G1159 Vigna mungo HOM05D003672 ORTHO05D004121 2.1e-35 154.1 375 32.5
Phvul.003G184800 Phaseolus vulgaris HOM05D003672 ORTHO05D004121 2.7e-35 153.7 398 33.9
Gohir.D12G185800 Gossypium hirsutum HOM05D003672 ORTHO05D004121 1.7e-34 151.0 281 39.9
GSVIVG01007866001 Vitis vinifera HOM05D003672 ORTHO05D004121 2.3e-34 150.6 365 36.2
CiPaw.12G008500 Carya illinoinensis HOM05D003672 ORTHO05D004121 8.7e-34 148.7 405 34.8
EL10Ac5g11131 Beta vulgaris HOM05D003672 ORTHO05D004121 1.9e-33 147.5 380 35.5
HPP92_007830 Vanilla planifolia HOM05D003672 ORTHO05D004121 1.9e-33 147.5 383 33.9
CsaV3_1G002930 Cucumis sativus L. HOM05D003672 ORTHO05D004121 2.5e-33 147.1 393 34.1
ClCG06G015630 Citrullus lanatus HOM05D003672 ORTHO05D004121 9.6e-33 145.2 368 34.8
Lalb_Chr13g0302861 Lupinus albus HOM05D003672 ORTHO05D004121 1.3e-32 144.8 408 33.3
DCAR_023172 Daucus carota HOM05D003672 ORTHO05D004121 1.6e-32 144.4 403 32.5
Medtr3g025870 Medicago truncatula HOM05D003672 ORTHO05D004121 4.8e-32 142.9 391 31.2
Dinv34068 Davidia involucrata HOM05D003672 ORTHO05D004121 8.1e-32 142.1 405 34.8
HanXRQChr16g0502451 Helianthus annuus HOM05D003672 ORTHO05D004121 8.1e-32 142.1 371 33.7
Haze_11907 Corylus avellana HOM05D003672 ORTHO05D004121 1.1e-31 141.7 354 35.0
AUR62021559 Chenopodium quinoa HOM05D003672 ORTHO05D004121 1.4e-31 141.4 382 32.7
SalBow7G3172 Salvia bowleyana HOM05D003672 ORTHO05D004121 2.4e-31 140.6 390 34.4
Aqoxy1G00151 Aquilegia oxysepala HOM05D003672 ORTHO05D004121 4.0e-31 139.8 395 32.9
HanXRQChr09g0270231 Helianthus annuus HOM05D003672 ORTHO05D004121 6.9e-31 139.0 370 33.5
Ah.02g114040 Amaranthus hybridus HOM05D003672 ORTHO05D004121 1.2e-30 138.3 380 33.2
Zm00001eb136280 Zea mays HOM05D003672 ORTHO05D004121 1.2e-30 138.3 374 34.5
AUR62008531 Chenopodium quinoa HOM05D003672 ORTHO05D004121 1.5e-30 137.9 385 34.3
ECA232G2426 Erigeron canadensis HOM05D003672 ORTHO05D004121 1.5e-30 137.9 373 34.6
Glyma.05G021000 Glycine max HOM05D003672 ORTHO05D004121 1.5e-30 137.9 404 33.9
PSO017G3206 Papaver somniferum HOM05D003672 ORTHO05D004121 3.4e-30 136.7 409 32.8
CAN.G3169.1 Capsicum annuum HOM05D002946 ORTHO05D003299 7.6e-30 135.6 396 31.8
CAN.G1228.24 Capsicum annuum HOM05D003672 ORTHO05D004121 9.9e-30 135.2 369 33.9
Lalb_Chr07g0178301 Lupinus albus HOM05D003672 ORTHO05D004121 4.9e-29 132.9 381 33.9
Actinidia31938 Actinidia chinensis HOM05D003672 ORTHO05D004121 5.4e-28 129.4 375 33.6
PGSC0003DMG400024637 Solanum tuberosum HOM05D003672 ORTHO05D004121 5.4e-28 129.4 389 31.6
Os12g0576300 Oryza sativa ssp. japonica HOM05D003672 ORTHO05D004121 1.6e-27 127.9 370 31.9
PSO478G1233 Papaver somniferum HOM05D003672 ORTHO05D004121 1.6e-27 127.9 409 32.3
vmacro16495 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 2.1e-27 127.5 399 34.8
MBI16_g38067_MAGBIO Magnolia biondii HOM05D003672 ORTHO05D004121 6.0e-27 125.9 383 32.6
Hund02585 Selenicereus undatus HOM05D003672 ORTHO05D004121 1.8e-26 124.4 395 32.7
CiPaw.05G125000 Carya illinoinensis HOM05D003672 ORTHO05D004121 3.0e-26 123.6 377 34.0
Zm00001eb029540 Zea mays HOM05D003672 ORTHO05D004121 1.9e-25 120.9 377 34.2
CSS0037619 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D004121 9.6e-25 118.6 376 33.0
Lj4g0018287 Lotus japonicus HOM05D003672 ORTHO05D004121 2.8e-24 117.1 389 32.4
ClCG04G011810 Citrullus lanatus HOM05D003672 ORTHO05D004121 4.8e-24 116.3 223 39.0
SGA_v2.0_scaffold25G10960 Striga asiatica HOM05D003672 ORTHO05D004121 1.1e-23 115.2 391 30.9
QL03p074101 Quercus lobata HOM05D003672 ORTHO05D004121 4.0e-23 113.2 393 31.6
Lj5A435T21 Lonicera japonica HOM05D003672 ORTHO05D004121 1.5e-22 111.3 351 33.3
Potri.008G096100 Populus trichocarpa HOM05D003672 ORTHO05D004121 5.8e-22 109.4 240 37.1
Sed0025785 Sechium edule HOM05D003672 ORTHO05D004121 1.3e-21 108.2 228 37.7
Ah.11g047770 Amaranthus hybridus HOM05D003672 ORTHO05D004121 2.9e-21 107.1 417 29.0
ATR0177G058 Amborella trichopoda HOM05D003672 ORTHO05D004121 2.9e-21 107.1 243 35.4
PGR102G2240 Punica granatum HOM05D003672 ORTHO05D004121 2.9e-21 107.1 211 35.1
CANSAT39G0004 Cannabis sativa HOM05D003672 ORTHO05D004121 4.9e-21 106.3 224 39.3
Hund09914 Selenicereus undatus HOM05D003672 ORTHO05D004121 4.9e-21 106.3 397 32.2
CsaV3_1G005970 Cucumis sativus L. HOM05D003672 ORTHO05D004121 6.4e-21 105.9 224 37.9
Atru.chr11.1624 Acer truncatum HOM05D003672 ORTHO05D004121 8.4e-21 105.5 230 37.4
MELO3C002028.2 Cucumis melo HOM05D003672 ORTHO05D004121 1.4e-20 104.8 224 38.4
QL03p074186 Quercus lobata HOM05D003672 ORTHO05D004121 7.1e-20 102.4 368 31.0
Eucgr.B03149 Eucalyptus grandis HOM05D003672 ORTHO05D004121 2.1e-19 100.9 252 33.3
Sabra08G0072400 Salix brachista HOM05D003672 ORTHO05D004121 1.3e-18 98.2 250 33.6
VMungo1215G3071 Vigna mungo HOM05D003672 ORTHO05D004121 3.0e-18 97.1 256 35.9
SalBow2G2767 Salvia bowleyana HOM05D003672 ORTHO05D004121 5.1e-18 96.3 367 32.2
Peaxi162Scf00175g00022 Petunia axillaris HOM05D003672 ORTHO05D004121 1.5e-17 94.7 230 35.2
PGSC0003DMG400028369 Solanum tuberosum HOM05D003672 ORTHO05D004121 1.5e-17 94.7 223 36.8
CDE04G0191 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 2.5e-17 94.0 393 27.7
Nitab4.5_0000231g0260 Nicotiana tabacum HOM05D003672 ORTHO05D004121 2.5e-17 94.0 211 38.9
Solyc05g012230.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 5.6e-17 92.8 210 37.6
Oeu004585.2 Olea europaea HOM05D003672 ORTHO05D004121 7.4e-17 92.4 215 36.7
unitig_749.g13432 Utricularia gibba HOM05D003672 ORTHO05D004121 2.8e-16 90.5 354 31.1
Manes.01G028000 Manihot esculenta HOM05D003672 ORTHO05D004121 6.2e-16 89.4 225 33.3
Rhsim12G0074700 Rhododendron simsii HOM05D003672 ORTHO05D004121 1.4e-15 88.2 458 26.6
CDE07G1307 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 3.1e-15 87.0 396 27.5
Lsat_1_v5_gn_8_46340 Lactuca sativa HOM05D003672 ORTHO05D004121 6.9e-15 85.9 196 38.8
Nitab4.5_0009585g0010 Nicotiana tabacum HOM05D003672 ORTHO05D004121 1.5e-14 84.7 199 38.2
Sopen05g007060 Solanum pennellii HOM05D003672 ORTHO05D004121 1.5e-14 84.7 195 36.9
SEGI_35614 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 4.5e-14 83.2 223 31.4
Rhsim12G0075200 Rhododendron simsii HOM05D003672 ORTHO05D004121 1.3e-13 81.6 458 26.2
SEGI_10408 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 8.4e-13 79.0 214 29.9
ECA233G1662 Erigeron canadensis HOM05D000677 ORTHO05D000727 1.1e-12 78.6 188 35.6
Cc11_g11950 Coffea canephora HOM05D003672 ORTHO05D004121 1.9e-12 77.8 215 35.3
vmacro01315 Vaccinium macrocarpon HOM05D003672 ORTHO05D004121 7.9e-11 72.4 235 31.9
HanXRQChr12g0363081 Helianthus annuus HOM05D003672 ORTHO05D004121 1.8e-10 71.2 191 34.0
VMungo1215G2632 Vigna mungo HOM05D003672 ORTHO05D004121 2.3e-10 70.9 142 36.6
Ciclev10033781m.g Citrus clementina HOM05D003672 ORTHO05D004121 3.0e-10 70.5 208 29.8
Migut.L01189 Erythranthe guttata HOM05D003672 ORTHO05D004121 1.5e-09 68.2 357 28.0
Sc12g0007260 Simmondsia chinensis HOM05D003672 ORTHO05D004121 9.6e-09 65.5 136 35.3
HPP92_000460 Vanilla planifolia HOM05D003672 ORTHO05D004121 3.7e-08 63.5 227 31.7
CAN.G1228.26 Capsicum annuum HOM05D003672 ORTHO05D004121 1.8e-07 61.2 141 36.2
SMO367G0340 Selaginella moellendorffii HOM05D018912 ORTHO05D004121 5.3e-07 59.7 193 32.1


User provided reference genes

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