Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g37272 Brassica carinata HOM05D006433 ORTHO05D005382 1.7e-134 482.6 242 100.0
A10p28440 Brassica napus HOM05D006433 ORTHO05D005382 2.3e-115 419.1 263 84.8
BraA10t44892Z Brassica rapa HOM05D006433 ORTHO05D005382 2.3e-115 419.1 263 84.8
C09p68700 Brassica napus HOM05D006433 ORTHO05D005382 1.5e-101 373.2 261 77.0
BolC9t59616H Brassica oleracea HOM05D006433 ORTHO05D005382 1.2e-100 370.2 261 76.2
Thhalv10014452m.g Eutrema salsugineum HOM05D006433 ORTHO05D005382 9.6e-85 317.4 260 68.8
Sp6g34710 Schrenkiella parvula HOM05D006433 ORTHO05D005382 1.4e-80 303.5 262 66.0
CARHR204930 Cardamine hirsuta HOM05D006433 ORTHO05D005382 5.1e-78 295.0 264 64.0
AT5G08240 Arabidopsis thaliana HOM05D006433 ORTHO05D005382 1.1e-77 293.9 265 64.5
AL6G18640 Arabidopsis lyrata HOM05D006433 ORTHO05D005382 1.3e-76 290.4 264 63.3
BcaNung05094 Brassica carinata HOM05D006433 ORTHO05D005382 1.6e-68 263.5 264 62.1
Carub.0006s0712 Capsella rubella HOM05D006433 ORTHO05D005382 1.9e-61 240.0 271 56.1
A03p03690 Brassica napus HOM05D006433 ORTHO05D005382 1.3e-60 237.3 236 63.1
BraA03t09717Z Brassica rapa HOM05D006433 ORTHO05D005382 2.8e-60 236.1 236 63.1
C03p04180 Brassica napus HOM05D006433 ORTHO05D005382 1.2e-58 230.7 236 61.9
BcaB01g05621 Brassica carinata HOM05D006433 ORTHO05D005382 3.4e-58 229.2 236 61.4
BolC3t12950H Brassica oleracea HOM05D006433 ORTHO05D005382 3.4e-58 229.2 236 61.4
Aa31LG3G18330 Aethionema arabicum HOM05D006433 ORTHO05D005382 3.0e-54 216.1 259 54.8
AT5G23160 Arabidopsis thaliana HOM05D006433 ORTHO05D005382 1.0e-30 137.9 284 41.5
Aa31LG11G2650 Aethionema arabicum HOM05D006433 ORTHO05D005382 3.0e-30 136.3 275 41.1
AL6G34350 Arabidopsis lyrata HOM05D006433 ORTHO05D005382 7.5e-29 131.7 284 38.7
BraA02t09057Z Brassica rapa HOM05D006433 ORTHO05D005382 1.4e-27 127.5 275 38.9
CARHR190370 Cardamine hirsuta HOM05D006433 ORTHO05D005382 5.3e-27 125.6 279 39.8
BcaB07g29865 Brassica carinata HOM05D006433 ORTHO05D005382 7.0e-27 125.2 276 40.6
A02p41140 Brassica napus HOM05D006433 ORTHO05D005382 1.6e-26 124.0 272 39.0
Carub.0006s2095 Capsella rubella HOM05D006433 ORTHO05D005382 1.0e-25 121.3 270 38.1
BcaC03g18036 Brassica carinata HOM05D006433 ORTHO05D005382 1.7e-25 120.6 269 37.9
C02p61000 Brassica napus HOM05D006433 ORTHO05D005382 1.2e-23 114.4 269 37.2
BolC2t12149H Brassica oleracea HOM05D006433 ORTHO05D005382 2.7e-23 113.2 273 37.0
Thhalv10005318m.g Eutrema salsugineum HOM05D006433 ORTHO05D005382 1.2e-18 97.8 72 65.3
Actinidia13713 Actinidia chinensis HOM05D006433 ORTHO05D005382 2.0e-13 80.5 269 28.6
Cpa.g.sc0.139 Carica papaya HOM05D006433 ORTHO05D005382 2.6e-13 80.1 286 29.7
Thecc.02G159800 Theobroma cacao HOM05D006433 ORTHO05D005382 9.8e-13 78.2 302 28.8
Gohir.A03G164900 Gossypium hirsutum HOM05D006433 ORTHO05D005382 4.9e-12 75.9 282 27.0
Duzib132G0593 Durio zibethinus HOM05D006433 ORTHO05D005382 8.3e-12 75.1 306 27.1
Haze_11768 Corylus avellana HOM05D006433 ORTHO05D005382 1.1e-11 74.7 323 26.3
Gorai.005G210800 Gossypium raimondii HOM05D006433 ORTHO05D005382 1.1e-11 74.7 278 28.1
Nitab4.5_0005356g0050 Nicotiana tabacum HOM05D006433 ORTHO05D005382 1.1e-11 74.7 310 28.7
TAR371G0604 Trochodendron aralioides HOM05D006433 ORTHO05D005382 1.1e-11 74.7 64 54.7
Actinidia38416 Actinidia chinensis HOM05D006433 ORTHO05D005382 2.4e-11 73.6 273 27.5
Thhalv10005437m.g Eutrema salsugineum HOM05D006433 ORTHO05D005382 3.1e-11 73.2 122 45.1
Gohir.D02G188100 Gossypium hirsutum HOM05D006433 ORTHO05D005382 4.1e-11 72.8 278 27.3
CiPaw.05G169900 Carya illinoinensis HOM05D006433 ORTHO05D005382 1.2e-10 71.2 317 24.6
MD16G1002700 Malus domestica HOM05D006433 ORTHO05D005382 1.2e-10 71.2 74 52.7
Gorai.008G148300 Gossypium raimondii HOM05D006433 ORTHO05D005382 1.6e-10 70.9 279 28.0
MD13G1005200 Malus domestica HOM05D006433 ORTHO05D005382 2.0e-10 70.5 74 51.4
Medtr1g037520 Medicago truncatula HOM05D006433 ORTHO05D005382 2.0e-10 70.5 65 50.8
Duzib248G0841 Durio zibethinus HOM05D006433 ORTHO05D005382 5.9e-10 68.9 304 24.3
Potri.007G071900 Populus trichocarpa HOM05D006433 ORTHO05D005382 7.7e-10 68.6 299 26.8
Ciclev10031878m.g Citrus clementina HOM05D006433 ORTHO05D005382 1.0e-09 68.2 69 53.6
COL.COLO4_03341 Corchorus olitorius HOM05D006433 ORTHO05D005382 1.0e-09 68.2 68 51.5
Glyma.09G282600 Glycine max HOM05D006433 ORTHO05D005382 1.0e-09 68.2 63 50.8
Nitab4.5_0000771g0160 Nicotiana tabacum HOM05D006433 ORTHO05D005382 1.0e-09 68.2 64 51.6
Prupe.1G347600 Prunus persica HOM05D006433 ORTHO05D005382 1.0e-09 68.2 62 53.2
ATR0618G439 Amborella trichopoda HOM05D006433 ORTHO05D005382 1.7e-09 67.4 69 50.7
Cfa008752 Carpinus fangiana HOM05D006433 ORTHO05D005382 2.3e-09 67.0 324 26.2
Eucgr.G02576 Eucalyptus grandis HOM05D006433 ORTHO05D005382 2.3e-09 67.0 66 51.5
PGR142G2540 Punica granatum HOM05D006433 ORTHO05D005382 2.3e-09 67.0 71 49.3
Gohir.A12G133500 Gossypium hirsutum HOM05D006433 ORTHO05D005382 2.9e-09 66.6 77 46.8
MBI06_g16016_MAGBIO Magnolia biondii HOM05D006433 ORTHO05D005382 5.0e-09 65.9 64 51.6
RcHm_v2.0_Chr4g0446731 Rosa chinensis HOM05D006433 ORTHO05D005382 5.0e-09 65.9 63 49.2
Gohir.D12G137000 Gossypium hirsutum HOM05D006433 ORTHO05D005382 6.6e-09 65.5 281 28.5
Sabra07G0060600 Salix brachista HOM05D006433 ORTHO05D005382 6.6e-09 65.5 142 32.4
Sopen04g004420 Solanum pennellii HOM05D006433 ORTHO05D005382 2.5e-08 63.5 65 50.8
PGSC0003DMG400032563 Solanum tuberosum HOM05D006433 ORTHO05D005382 2.5e-08 63.5 301 24.9
FvH4_4g36960 Fragaria vesca HOM05D006433 ORTHO05D005382 3.3e-08 63.2 73 45.2
FAN12G0758 Fragaria x ananassa HOM05D006433 ORTHO05D005382 3.3e-08 63.2 73 45.2
Nitab4.5_0002132g0010 Nicotiana tabacum HOM05D006433 ORTHO05D005382 3.3e-08 63.2 63 50.8
TPR.G39976 Trifolium pratense HOM05D006433 ORTHO05D005382 3.3e-08 63.2 63 47.6
TWI74G1071 Tripterygium wilfordii HOM05D006433 ORTHO05D005382 3.3e-08 63.2 287 28.6
Lj6A717T151 Lonicera japonica HOM05D006433 ORTHO05D005382 4.3e-08 62.8 67 47.8
TAR629G0072 Trochodendron aralioides HOM05D006433 ORTHO05D005382 5.6e-08 62.4 295 24.7
Cc11_g02400 Coffea canephora HOM05D006433 ORTHO05D005382 7.3e-08 62.0 65 47.7
Solyc04g009305.1 Solanum lycopersicum HOM05D006433 ORTHO05D005382 7.3e-08 62.0 305 25.9
VMungo0251G3481 Vigna mungo HOM05D006433 ORTHO05D005382 7.3e-08 62.0 66 47.0
arahy.Tifrunner.gnm1.ann1.X1AWTF Arachis hypogaea HOM05D006433 ORTHO05D005382 9.5e-08 61.6 61 47.5
TWI77G0994 Tripterygium wilfordii HOM05D006433 ORTHO05D005382 9.5e-08 61.6 266 28.2
FAN07G1145 Fragaria x ananassa HOM05D006433 ORTHO05D005382 1.2e-07 61.2 73 43.8
Psat6g135800 Pisum sativum HOM05D006433 ORTHO05D005382 1.6e-07 60.8 66 43.9
Lj2g0006429 Lotus japonicus HOM05D006433 ORTHO05D005382 2.8e-07 60.1 239 27.6
ECA246G5167 Erigeron canadensis HOM05D006433 ORTHO05D005382 3.6e-07 59.7 69 44.9
Lsat_1_v5_gn_3_35360 Lactuca sativa HOM05D006433 ORTHO05D005382 3.6e-07 59.7 69 44.9
Nn1g03826 Nelumbo nucifera HOM05D008701 ORTHO05D005382 1.0e-06 58.2 62 41.9
Phvul.003G005000 Phaseolus vulgaris HOM05D006433 ORTHO05D005382 1.0e-06 58.2 65 46.2
FAN17G1725 Fragaria x ananassa HOM05D006433 ORTHO05D005382 1.4e-06 57.8 70 41.4
Glyma.20G002800 Glycine max HOM05D006433 ORTHO05D005382 2.3e-06 57.0 68 47.1
Lalb_Chr10g0094961 Lupinus albus HOM05D006433 ORTHO05D005382 2.3e-06 57.0 263 27.4
MBI03_g09362_MAGBIO Magnolia biondii HOM05D006433 ORTHO05D005382 2.3e-06 57.0 295 24.4
QL03p044176 Quercus lobata HOM05D006433 ORTHO05D005382 2.3e-06 57.0 63 42.9
CiPaw.06G061400 Carya illinoinensis HOM05D006433 ORTHO05D005382 3.0e-06 56.6 64 45.3
Potri.005G092400 Populus trichocarpa HOM05D006433 ORTHO05D005382 3.0e-06 56.6 292 26.0
Dinv08359 Davidia involucrata HOM05D012187 ORTHO05D005382 4.0e-06 56.2 66 40.9
Manes.11G107400 Manihot esculenta HOM05D006433 ORTHO05D005382 4.0e-06 56.2 68 44.1
DCAR_023460 Daucus carota HOM05D006433 ORTHO05D005382 8.9e-06 55.1 61 49.2


User provided reference genes

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