Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g37248 Brassica carinata HOM05D006753 ORTHO05D008521 2.7e-104 382.1 206 100.0
C09p68400 Brassica napus HOM05D006753 ORTHO05D008521 1.3e-34 150.6 87 93.1
BolC9t59587H Brassica oleracea HOM05D006753 ORTHO05D008521 2.5e-33 146.4 86 91.9
A10p28190 Brassica napus HOM05D006753 ORTHO05D008521 4.7e-32 142.1 87 89.7
BraA10t44868Z Brassica rapa HOM05D006753 ORTHO05D008521 4.7e-32 142.1 87 89.7
Sp6g34360 Schrenkiella parvula HOM05D006753 ORTHO05D008521 3.4e-30 136.0 108 79.6
CARHR204450 Cardamine hirsuta HOM05D006753 ORTHO05D008521 1.5e-25 120.6 111 76.6
Carub.0005s1869 Capsella rubella HOM05D006753 ORTHO05D008521 1.2e-22 110.9 106 62.3
Carub.0006s0749 Capsella rubella HOM05D006753 ORTHO05D008521 2.6e-22 109.8 89 74.2
Aa31LG3G18000 Aethionema arabicum HOM05D006753 ORTHO05D008521 1.3e-21 107.5 87 70.1
Thhalv10002245m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 1.7e-21 107.1 113 63.7
AT3G52350 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 3.7e-21 105.9 104 61.5
AL5G33000 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 8.3e-21 104.8 105 67.6
AL6G19240 Arabidopsis lyrata HOM05D006753 ORTHO05D008521 5.4e-20 102.1 131 58.8
AT5G08535 Arabidopsis thaliana HOM05D006753 ORTHO05D008521 4.6e-19 99.0 131 57.3
TWI53G0448 Tripterygium wilfordii HOM05D006753 ORTHO05D008521 5.0e-18 95.5 108 54.6
BcaB08g34880 Brassica carinata HOM05D006753 ORTHO05D008521 3.3e-17 92.8 108 63.9
Cfa018673 Carpinus fangiana HOM05D006753 ORTHO05D008521 4.3e-17 92.4 107 55.1
Thecc.02G152400 Theobroma cacao HOM05D006753 ORTHO05D008521 4.3e-17 92.4 108 55.6
Lj5g0026283 Lotus japonicus HOM05D006753 ORTHO05D008521 5.6e-17 92.0 116 54.3
Duzib052G0750 Durio zibethinus HOM05D006753 ORTHO05D008521 2.1e-16 90.1 110 52.7
ECA238G1815 Erigeron canadensis HOM05D006753 ORTHO05D008521 2.8e-16 89.7 109 57.8
arahy.Tifrunner.gnm1.ann1.IW7U68 Arachis hypogaea HOM05D006753 ORTHO05D008521 3.6e-16 89.4 81 64.2
Phvul.007G012200 Phaseolus vulgaris HOM05D006753 ORTHO05D008521 4.7e-16 89.0 108 55.6
A09p59170 Brassica napus HOM05D006753 ORTHO05D008521 1.1e-15 87.8 83 66.3
BraA09t41301Z Brassica rapa HOM05D006753 ORTHO05D008521 1.4e-15 87.4 98 66.3
arahy.Tifrunner.gnm1.ann1.RGG8YR Arachis hypogaea HOM05D006753 ORTHO05D008521 1.8e-15 87.0 81 63.0
QL01p000327 Quercus lobata HOM05D006753 ORTHO05D008521 1.8e-15 87.0 113 54.9
Manes.04G161100 Manihot esculenta HOM05D006753 ORTHO05D008521 3.1e-15 86.3 111 53.2
Medtr1g115255 Medicago truncatula HOM05D006753 ORTHO05D008521 3.1e-15 86.3 113 51.3
MD13G1001300 Malus domestica HOM05D006753 ORTHO05D008521 4.0e-15 85.9 106 54.7
PGR044G1510 Punica granatum HOM05D006753 ORTHO05D008521 4.0e-15 85.9 108 53.7
MELO3C011766.2 Cucumis melo HOM05D006753 ORTHO05D008521 5.2e-15 85.5 110 49.1
RcHm_v2.0_Chr4g0447151 Rosa chinensis HOM05D006753 ORTHO05D008521 5.2e-15 85.5 106 54.7
Duzib132G0454 Durio zibethinus HOM05D006753 ORTHO05D008521 6.8e-15 85.1 109 51.4
VMungo0720G0065 Vigna mungo HOM05D006753 ORTHO05D008521 6.8e-15 85.1 81 64.2
FAN07G1749 Fragaria x ananassa HOM05D006753 ORTHO05D008521 8.9e-15 84.7 111 53.2
FAN17G2405 Fragaria x ananassa HOM05D006753 ORTHO05D008521 8.9e-15 84.7 111 53.2
CiPaw.16G000900 Carya illinoinensis HOM05D006753 ORTHO05D008521 1.2e-14 84.3 100 55.0
FvH4_4g37311 Fragaria vesca HOM05D006753 ORTHO05D008521 1.2e-14 84.3 111 52.3
Psat6g234480 Pisum sativum HOM05D006753 ORTHO05D008521 1.5e-14 84.0 84 60.7
COL.COLO4_33141 Corchorus olitorius HOM05D006753 ORTHO05D008521 2.6e-14 83.2 122 48.4
Glyma.10G288900 Glycine max HOM05D006753 ORTHO05D008521 2.6e-14 83.2 115 50.4
CsaV3_5G029140 Cucumis sativus L. HOM05D006753 ORTHO05D008521 3.4e-14 82.8 113 46.0
Lalb_Chr02g0144111 Lupinus albus HOM05D006753 ORTHO05D008521 3.4e-14 82.8 115 48.7
TPR.G4104 Trifolium pratense HOM05D006753 ORTHO05D008521 3.4e-14 82.8 87 56.3
AUR62017753 Chenopodium quinoa HOM05D006753 ORTHO05D008521 4.4e-14 82.4 104 51.0
Sed0019092 Sechium edule HOM05D006753 ORTHO05D008521 4.4e-14 82.4 109 47.7
EL10Ac9g23017 Beta vulgaris HOM05D006753 ORTHO05D008521 5.8e-14 82.0 110 48.2
BcaC07g41240 Brassica carinata HOM05D006753 ORTHO05D008521 5.8e-14 82.0 111 61.3
C08p42460 Brassica napus HOM05D006753 ORTHO05D008521 5.8e-14 82.0 111 61.3
BolC8t51807H Brassica oleracea HOM05D006753 ORTHO05D008521 5.8e-14 82.0 111 61.3
Ca_11278_v3 Cicer arietinum L. HOM05D006753 ORTHO05D008521 5.8e-14 82.0 95 54.7
Ciclev10017207m.g Citrus clementina HOM05D006753 ORTHO05D008521 5.8e-14 82.0 105 49.5
Atru.chr11.42 Acer truncatum HOM05D006753 ORTHO05D008521 9.8e-14 81.3 109 49.5
CANSAT78G0938 Cannabis sativa HOM05D006753 ORTHO05D008521 9.8e-14 81.3 111 49.5
MSTRG.13663 Avicennia marina HOM05D006753 ORTHO05D008521 1.3e-13 80.9 99 50.5
Lj6g0020021 Lotus japonicus HOM05D006753 ORTHO05D008521 1.3e-13 80.9 88 58.0
MBI03_g11899_MAGBIO Magnolia biondii HOM05D006753 ORTHO05D008521 1.7e-13 80.5 106 50.9
Sc21g0003760 Simmondsia chinensis HOM05D006753 ORTHO05D008521 2.2e-13 80.1 104 52.9
ClCG11G012760 Citrullus lanatus HOM05D006753 ORTHO05D008521 2.9e-13 79.7 117 46.2
DCAR_023493 Daucus carota HOM05D006753 ORTHO05D008521 2.9e-13 79.7 112 49.1
SGA_v2.0_scaffold119G32769 Striga asiatica HOM05D006753 ORTHO05D008521 2.9e-13 79.7 104 57.7
ATR0124G001 Amborella trichopoda HOM05D006753 ORTHO05D008521 3.7e-13 79.3 95 54.7
Nn3g18540 Nelumbo nucifera HOM05D006753 ORTHO05D008521 3.7e-13 79.3 114 48.2
Gohir.D12G135600 Gossypium hirsutum HOM05D006753 ORTHO05D008521 4.9e-13 79.0 87 54.0
Gorai.008G146800 Gossypium raimondii HOM05D006753 ORTHO05D008521 4.9e-13 79.0 87 54.0
AUR62032899 Chenopodium quinoa HOM05D006753 ORTHO05D008521 6.4e-13 78.6 107 45.8
Gohir.A12G132000 Gossypium hirsutum HOM05D006753 ORTHO05D008521 6.4e-13 78.6 87 54.0
Oeu006328.1 Olea europaea HOM05D006753 ORTHO05D008521 6.4e-13 78.6 103 51.5
Sabra08G0001000 Salix brachista HOM05D006753 ORTHO05D008521 6.4e-13 78.6 58 72.4
Zm00001eb044950 Zea mays HOM05D006753 ORTHO05D008521 8.3e-13 78.2 99 49.5
Os10g0491900 Oryza sativa ssp. japonica HOM05D006753 ORTHO05D008521 1.4e-12 77.4 98 50.0
Cc11_g04160 Coffea canephora HOM05D006753 ORTHO05D008521 1.9e-12 77.0 69 63.8
AUR62020818 Chenopodium quinoa HOM05D006753 ORTHO05D008521 4.1e-12 75.9 64 64.1
TAR629G2108 Trochodendron aralioides HOM05D006753 ORTHO05D008521 4.1e-12 75.9 114 48.2
HPP92_003487 Vanilla planifolia HOM05D006753 ORTHO05D008521 4.1e-12 75.9 86 53.5
HPP92_026885 Vanilla planifolia HOM05D006753 ORTHO05D008521 4.1e-12 75.9 86 53.5
GSVIVG01034354001 Vitis vinifera HOM05D006753 ORTHO05D008521 4.1e-12 75.9 105 49.5
Dinv25482 Davidia involucrata HOM05D006753 ORTHO05D008521 5.4e-12 75.5 94 51.1
Nitab4.5_0000075g0200 Nicotiana tabacum HOM05D006753 ORTHO05D008521 7.0e-12 75.1 118 44.9
Lsat_1_v5_gn_2_64221 Lactuca sativa HOM05D006753 ORTHO05D008521 1.2e-11 74.3 109 52.3
HanXRQChr14g0446421 Helianthus annuus HOM05D006753 ORTHO05D008521 1.6e-11 73.9 78 57.7
SHI21226 Sapria himalayana HOM05D000843 ORTHO05D000698 1.6e-11 73.9 85 52.9
Migut.E00658 Erythranthe guttata HOM05D006753 ORTHO05D008521 2.0e-11 73.6 101 47.5
PSO782G2482 Papaver somniferum HOM05D006753 ORTHO05D008521 2.0e-11 73.6 81 50.6
RcHm_v2.0_Chr5g0030611 Rosa chinensis HOM05D006753 ORTHO05D008521 2.0e-11 73.6 99 49.5
Migut.E00593 Erythranthe guttata HOM05D006753 ORTHO05D008521 2.7e-11 73.2 101 47.5
FAN11G3971 Fragaria x ananassa HOM05D006753 ORTHO05D008521 3.5e-11 72.8 99 50.5
Prupe.1G351400 Prunus persica HOM05D006753 ORTHO05D008521 4.6e-11 72.4 84 53.6
PSO063G2822 Papaver somniferum HOM05D006753 ORTHO05D008521 7.8e-11 71.6 87 48.3
Potri.008G003100 Populus trichocarpa HOM05D006753 ORTHO05D008521 7.8e-11 71.6 120 44.2
Sopen03g009600 Solanum pennellii HOM05D006753 ORTHO05D008521 7.8e-11 71.6 116 48.3
SMO115G0110 Selaginella moellendorffii HOM05D000422 ORTHO05D002369 1.0e-10 71.2 84 52.4
SMO166G0033 Selaginella moellendorffii HOM05D006753 ORTHO05D008521 1.0e-10 71.2 84 52.4
FvH4_3g18161 Fragaria vesca HOM05D006753 ORTHO05D008521 1.7e-10 70.5 99 49.5
PGSC0003DMG400018762 Solanum tuberosum HOM05D006753 ORTHO05D008521 1.7e-10 70.5 116 47.4
SEGI_09956 Sequoiadendron giganteum HOM05D006753 ORTHO05D008521 3.9e-10 69.3 85 52.9
Pp3c15_7650 Physcomitrium patens HOM05D006753 ORTHO05D008521 8.6e-10 68.2 85 49.4
Nitab4.5_0001307g0130 Nicotiana tabacum HOM05D006753 ORTHO05D008521 1.1e-09 67.8 121 43.0
Nitab4.5_0008337g0010 Nicotiana tabacum HOM05D006753 ORTHO05D008521 2.5e-09 66.6 121 43.0
CDE05G2438 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 3.3e-09 66.2 118 42.4
Thhalv10015604m.g Eutrema salsugineum HOM05D006753 ORTHO05D008521 5.6e-09 65.5 71 60.6
AagrBONN_evm.TU.Sc2ySwM_228.1188 Anthoceros agrestis HOM05D006753 ORTHO05D008521 1.2e-08 64.3 59 49.2
CDE05G0871 Ceratophyllum demersum HOM05D006753 ORTHO05D008521 1.2e-08 64.3 118 41.5
Aqoxy3G04333 Aquilegia oxysepala HOM05D006753 ORTHO05D008521 1.6e-08 63.9 105 42.9
CAN.G815.2 Capsicum annuum HOM05D006753 ORTHO05D008521 2.1e-08 63.5 116 42.2
Rhsim05G0152000 Rhododendron simsii HOM05D006753 ORTHO05D008521 2.8e-08 63.2 97 47.4
Mapoly0001s0293 Marchantia polymorpha HOM05D006753 ORTHO05D008521 2.3e-07 60.1 80 45.0
Haze_17401 Corylus avellana HOM05D006753 ORTHO05D008521 1.2e-06 57.8 43 69.8
vmacro19681 Vaccinium macrocarpon HOM05D006753 ORTHO05D008521 3.4e-06 56.2 34 82.4
Zm00001eb089260 Zea mays HOM05D005826 ORTHO05D004357 4.4e-06 55.8 51 47.1


User provided reference genes

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