Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 0.0e+00 1338.6 696 100.0
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 0.0e+00 1228.0 719 91.4
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 0.0e+00 1216.1 719 90.1
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 0.0e+00 1208.7 719 89.6
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 0.0e+00 1208.7 719 89.6
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 0.0e+00 1093.6 711 82.1
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 0.0e+00 1091.3 728 79.5
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 0.0e+00 1075.5 728 78.2
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 0.0e+00 1075.5 725 77.7
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 1.2e-310 1069.3 725 77.2
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 1.8e-309 1065.4 735 76.9
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 4.9e-307 1057.4 728 77.1
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 2.8e-302 1041.6 728 77.3
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 4.9e-299 1030.8 728 76.8
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 7.6e-284 980.3 775 68.9
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 4.6e-257 891.3 731 65.1
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 2.2e-230 802.7 499 83.2
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 9.7e-215 750.7 743 54.6
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 3.7e-206 722.2 725 53.1
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 2.0e-204 716.5 722 53.3
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 1.7e-203 713.4 703 55.5
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 3.8e-203 712.2 723 53.3
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 6.1e-201 704.9 723 53.5
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 1.2e-199 700.7 719 53.1
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 4.9e-198 695.3 719 52.6
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 1.8e-197 693.3 717 52.2
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 9.2e-197 691.0 721 51.9
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 2.0e-196 689.9 716 52.5
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 2.9e-195 686.0 715 52.6
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 4.3e-194 682.2 715 52.4
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 1.6e-193 680.2 712 51.3
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 2.1e-193 679.9 712 51.1
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 2.8e-193 679.5 718 51.1
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 4.7e-193 678.7 708 52.4
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 6.8e-192 674.9 713 51.5
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 8.9e-192 674.5 723 52.7
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 8.9e-192 674.5 730 51.5
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 1.3e-190 670.6 719 52.2
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 2.4e-189 666.4 718 50.7
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 3.2e-189 666.0 713 51.3
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 2.7e-188 662.9 709 51.3
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 1.0e-187 661.0 734 50.7
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 1.7e-187 660.2 714 52.2
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 6.6e-187 658.3 742 50.7
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 1.1e-186 657.5 714 49.6
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 2.5e-186 656.4 725 51.0
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 1.2e-185 654.1 725 50.2
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 1.6e-185 653.7 720 51.0
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 2.1e-185 653.3 714 50.4
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 1.8e-184 650.2 719 50.3
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 5.2e-184 648.7 726 50.0
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 6.8e-184 648.3 709 50.8
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 8.9e-184 647.9 711 51.1
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 2.0e-183 646.7 707 50.6
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 5.4e-181 638.6 714 49.7
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 5.4e-181 638.6 716 51.0
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 6.0e-180 635.2 705 50.2
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 1.3e-179 634.0 715 50.3
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 5.1e-179 632.1 751 49.8
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 6.6e-179 631.7 716 49.2
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 6.6e-179 631.7 704 49.1
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 2.5e-178 629.8 710 48.6
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 5.6e-178 628.6 702 48.9
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 7.3e-178 628.2 700 49.4
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 7.3e-178 628.2 711 49.1
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 1.2e-177 627.5 716 48.9
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 4.7e-177 625.5 704 48.6
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 8.1e-177 624.8 709 49.1
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 1.4e-176 624.0 711 48.8
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.2e-175 620.9 714 48.9
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 6.4e-174 615.1 736 48.1
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 1.1e-173 614.4 701 48.8
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 9.2e-173 611.3 730 47.5
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 1.3e-171 607.4 736 47.6
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 3.9e-171 605.9 702 48.7
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 6.6e-171 605.1 737 46.3
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 6.6e-171 605.1 697 47.3
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 1.1e-170 604.4 700 47.7
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 4.0e-168 595.9 733 47.9
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 3.8e-166 589.3 723 47.3
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 3.8e-166 589.3 702 47.7
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 4.9e-166 589.0 727 49.7
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 1.1e-165 587.8 704 46.9
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 1.1e-165 587.8 719 45.8
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 1.9e-165 587.0 700 46.4
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 1.6e-164 583.9 753 44.9
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 8.7e-163 578.2 726 45.5
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 1.1e-162 577.8 727 50.2
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 3.3e-162 576.2 703 45.2
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 9.6e-162 574.7 714 45.2
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 6.2e-161 572.0 731 49.2
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 1.1e-160 571.2 727 49.2
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 1.4e-160 570.9 673 48.3
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 2.4e-160 570.1 633 49.1
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 2.2e-158 563.5 705 45.1
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 6.4e-158 562.0 726 45.0
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 1.2e-156 557.8 751 46.5
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 2.7e-156 556.6 669 46.8
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 3.5e-156 556.2 639 48.8
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 5.1e-155 552.4 620 49.0
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 1.3e-153 547.7 697 44.0
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 9.0e-152 541.6 628 48.7
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 1.2e-151 541.2 698 44.6
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 2.1e-148 530.4 634 47.8
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 4.3e-146 522.7 697 44.5
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 7.4e-146 521.9 696 43.5
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 1.4e-144 517.7 678 43.7
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 5.3e-136 489.2 636 43.9
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 1.0e-134 485.0 617 47.2
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 1.1e-133 481.5 548 49.6
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 1.2e-132 478.0 524 51.5
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 3.9e-131 473.0 806 39.6
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.3e-129 468.0 673 40.9
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 6.9e-128 462.2 769 39.7
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 2.2e-126 457.2 648 41.5
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 6.7e-107 392.5 699 37.1
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 1.9e-101 374.4 732 35.4
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 3.2e-101 373.6 747 37.3
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 9.4e-101 372.1 815 32.6
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 3.6e-100 370.2 754 36.3
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 7.8e-79 299.3 480 37.3
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 3.1e-75 287.3 511 36.6
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.5e-74 285.0 860 28.4
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 4.1e-72 276.9 465 36.8
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 1.9e-64 251.5 127 94.5
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 5.2e-59 233.4 420 34.8
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 2.7e-55 221.1 660 27.7
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 3.2e-40 171.0 223 43.5
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 5.1e-38 163.7 151 53.6
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 5.6e-37 160.2 214 43.0
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 5.6e-37 160.2 291 33.7
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 2.6e-34 151.4 148 51.4
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 8.4e-33 146.4 95 69.5
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 3.5e-31 141.0 98 72.4
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.8e-30 138.7 213 39.4
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 6.9e-27 126.7 95 65.3
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 3.4e-26 124.4 130 50.0
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 2.0e-18 98.6 134 37.3
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 2.3e-14 85.1 85 51.8
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 3.3e-13 81.3 491 26.1
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 1.3e-12 79.3 74 55.4
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 2.0e-10 72.0 244 27.0
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 1.1e-08 66.2 243 27.2
Rhsim02G0134900 Rhododendron simsii HOM05D001439 ORTHO05D002726 1.0e-06 59.7 148 31.8
unitig_27.g24975 Utricularia gibba HOM05D001439 ORTHO05D002726 2.3e-06 58.5 81 43.2
Ciclev10014022m.g Citrus clementina HOM05D001439 ORTHO05D002726 3.0e-06 58.2 129 32.6
Medtr4g088375 Medicago truncatula HOM05D001439 ORTHO05D002726 3.0e-06 58.2 92 40.2
Nn1g06413 Nelumbo nucifera HOM05D001439 ORTHO05D002726 3.0e-06 58.2 82 45.1
Actinidia26141 Actinidia chinensis HOM05D001439 ORTHO05D002726 3.9e-06 57.8 287 27.2
Ca_18589_v3 Cicer arietinum L. HOM05D001439 ORTHO05D002726 3.9e-06 57.8 107 38.3
PSO339G1313 Papaver somniferum HOM05D001312 ORTHO05D001832 3.9e-06 57.8 159 27.0
TAR626G0101 Trochodendron aralioides HOM05D001439 ORTHO05D002726 3.9e-06 57.8 92 38.0
HanXRQChr15g0469531 Helianthus annuus HOM05D001439 ORTHO05D002726 5.1e-06 57.4 140 33.6
Potri.017G016200 Populus trichocarpa HOM05D001439 ORTHO05D002726 5.1e-06 57.4 93 40.9
SGA_v2.0_scaffold16G07637 Striga asiatica HOM05D001439 ORTHO05D002726 5.1e-06 57.4 110 36.4
VMungo1080G0366 Vigna mungo HOM05D001312 ORTHO05D001832 6.7e-06 57.0 159 30.2
PSO063G1518 Papaver somniferum HOM05D001312 ORTHO05D001832 8.8e-06 56.6 159 27.0
QL08p040227 Quercus lobata HOM05D001439 ORTHO05D002726 8.8e-06 56.6 100 39.0
Sabra07G0109800 Salix brachista HOM05D001439 ORTHO05D002726 8.8e-06 56.6 93 38.7


User provided reference genes

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