Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g37167 Brassica carinata HOM05D004540 ORTHO05D004852 3.5e-52 208.0 103 100.0
A10p27650 Brassica napus HOM05D004540 ORTHO05D004852 4.6e-44 181.0 101 89.1
AL6G20210 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 1.9e-34 149.1 104 76.0
AT5G09805 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 6.2e-33 144.1 97 76.3
BcaB01g05561 Brassica carinata HOM05D004540 ORTHO05D004852 8.9e-32 140.2 100 72.0
C03p04700 Brassica napus HOM05D004540 ORTHO05D004852 8.9e-32 140.2 100 72.0
Thhalv10015116m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 1.1e-29 133.3 100 73.0
BraA10t44817Z Brassica rapa HOM05D004540 ORTHO05D004852 4.4e-23 111.3 101 61.4
A02p00160 Brassica napus HOM05D004540 ORTHO05D004852 1.3e-22 109.8 105 61.0
BcaB08g37180 Brassica carinata HOM05D004540 ORTHO05D004852 5.4e-21 104.4 101 59.4
C09p67710 Brassica napus HOM05D004540 ORTHO05D004852 5.4e-21 104.4 101 59.4
BolC9t59533H Brassica oleracea HOM05D004540 ORTHO05D004852 5.4e-21 104.4 101 59.4
C02p04070 Brassica napus HOM05D004540 ORTHO05D004852 6.0e-20 100.9 90 61.1
BolC2t06369H Brassica oleracea HOM05D004540 ORTHO05D004852 6.0e-20 100.9 90 61.1
BcaC03g13276 Brassica carinata HOM05D004540 ORTHO05D004852 1.0e-19 100.1 90 60.0
BraA02t05000Z Brassica rapa HOM05D004540 ORTHO05D004852 1.7e-19 99.4 90 60.0
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 3.6e-17 91.7 109 54.1
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 5.3e-16 87.8 109 51.4
BraA03t09770Z Brassica rapa HOM05D004540 ORTHO05D004852 5.3e-16 87.8 100 50.0
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 3.4e-15 85.1 103 51.5
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 3.4e-15 85.1 109 51.4
A03p04260 Brassica napus HOM05D004540 ORTHO05D004852 4.4e-15 84.7 100 48.0
BolC3t13005H Brassica oleracea HOM05D004540 ORTHO05D004852 4.4e-15 84.7 100 50.0
Sp6g33605 Schrenkiella parvula HOM05D004540 ORTHO05D004852 5.8e-15 84.3 41 90.2
BraA09t36527Z Brassica rapa HOM05D004540 ORTHO05D004852 3.8e-14 81.6 104 50.0
BcaB01g05659 Brassica carinata HOM05D004540 ORTHO05D004852 6.4e-14 80.9 101 48.5
BcaC01g02698 Brassica carinata HOM05D004540 ORTHO05D004852 6.4e-14 80.9 104 51.0
C03p61500 Brassica napus HOM05D004540 ORTHO05D004852 6.4e-14 80.9 104 51.0
BolC3t18411H Brassica oleracea HOM05D004540 ORTHO05D004852 6.4e-14 80.9 104 51.0
BraA06t26083Z Brassica rapa HOM05D004540 ORTHO05D004852 6.4e-14 80.9 104 51.0
CARHR203600 Cardamine hirsuta HOM05D004540 ORTHO05D004852 8.4e-14 80.5 104 48.1
BcaB04g19982 Brassica carinata HOM05D004540 ORTHO05D004852 1.9e-13 79.3 110 50.0
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 2.4e-13 79.0 104 49.0
BcaC04g23300 Brassica carinata HOM05D004540 ORTHO05D004852 3.2e-13 78.6 104 49.0
A06p31460 Brassica napus HOM05D004540 ORTHO05D004852 3.2e-13 78.6 104 50.0
C09p09950 Brassica napus HOM05D004540 ORTHO05D004852 3.2e-13 78.6 104 49.0
BolC9t53903H Brassica oleracea HOM05D004540 ORTHO05D004852 3.2e-13 78.6 104 49.0
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 4.2e-13 78.2 104 50.0
BcaB05g21528 Brassica carinata HOM05D004540 ORTHO05D004852 4.6e-12 74.7 108 49.1
Carub.0006s0822 Capsella rubella HOM05D004540 ORTHO05D004852 7.8e-12 73.9 99 48.5
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 2.3e-11 72.4 96 49.0
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 2.1e-09 65.9 84 44.0
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 4.8e-09 64.7 86 43.0
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 1.1e-08 63.5 87 42.5
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 1.8e-08 62.8 85 42.4
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 1.8e-08 62.8 100 39.0
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 2.4e-08 62.4 90 42.2
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.4e-08 62.4 91 41.8
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.4e-08 62.4 91 41.8
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.4e-08 62.4 86 43.0
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 2.4e-08 62.4 86 43.0
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 2.4e-08 62.4 91 41.8
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 3.1e-08 62.0 82 42.7
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 3.1e-08 62.0 82 42.7
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 3.1e-08 62.0 82 42.7
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 3.1e-08 62.0 95 37.9
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 3.1e-08 62.0 95 37.9
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.1e-08 62.0 86 43.0
Aa31LG3G17310 Aethionema arabicum HOM05D004540 ORTHO05D004852 4.0e-08 61.6 37 81.1
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 4.0e-08 61.6 91 40.7
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 5.3e-08 61.2 95 36.8
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 6.9e-08 60.8 84 42.9
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 6.9e-08 60.8 91 39.6
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 9.0e-08 60.5 91 40.7
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 9.0e-08 60.5 91 40.7
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 9.0e-08 60.5 95 36.8
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 1.2e-07 60.1 93 38.7
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 1.5e-07 59.7 86 40.7
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 2.0e-07 59.3 87 39.1
DCAR_014344 Daucus carota HOM05D004540 ORTHO05D004852 2.0e-07 59.3 103 39.8
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 3.4e-07 58.5 90 40.0
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 3.4e-07 58.5 93 38.7
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 3.4e-07 58.5 93 38.7
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 3.4e-07 58.5 84 40.5
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 3.4e-07 58.5 87 37.9
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 3.4e-07 58.5 90 41.1
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 4.5e-07 58.2 93 38.7
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 4.5e-07 58.2 93 38.7
BcaB06g25922 Brassica carinata HOM05D004540 ORTHO05D004852 5.8e-07 57.8 84 40.5
BcaNung06138 Brassica carinata HOM05D004540 ORTHO05D004852 5.8e-07 57.8 84 40.5
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 9.9e-07 57.0 82 39.0
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 1.3e-06 56.6 30 80.0
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.2e-06 55.8 82 39.0
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 2.2e-06 55.8 82 39.0
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 2.2e-06 55.8 89 39.3
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 2.9e-06 55.5 94 38.3
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 2.9e-06 55.5 87 37.9
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 3.8e-06 55.1 88 35.2
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 4.9e-06 54.7 91 37.4
Aa31LG1G17280 Aethionema arabicum HOM05D004540 ORTHO05D004852 8.4e-06 53.9 86 40.7
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 8.4e-06 53.9 27 81.5
CsaV3_6G041820 Cucumis sativus L. HOM05D004540 ORTHO05D004852 8.4e-06 53.9 27 81.5
Potri.005G189900 Populus trichocarpa HOM05D004540 ORTHO05D004852 8.4e-06 53.9 92 35.9
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 8.4e-06 53.9 85 38.8
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 8.4e-06 53.9 85 38.8


User provided reference genes

Program Settings