Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g37145 Brassica carinata HOM05D001562 ORTHO05D001437 3.8e-32 141.0 75 100.0
AT5G10060 Arabidopsis thaliana HOM05D001562 ORTHO05D001437 6.1e-14 80.5 60 76.7
Thhalv10013419m.g Eutrema salsugineum HOM05D001562 ORTHO05D001437 8.0e-14 80.1 60 76.7
BcaC03g13291 Brassica carinata HOM05D001562 ORTHO05D001437 1.0e-13 79.7 60 76.7
C02p04230 Brassica napus HOM05D001562 ORTHO05D001437 1.0e-13 79.7 60 76.7
BraA02t05016Z Brassica rapa HOM05D000868 ORTHO05D000711 1.0e-13 79.7 60 76.7
AL6G20510 Arabidopsis lyrata HOM05D001562 ORTHO05D001437 1.4e-13 79.3 60 76.7
BcaB01g05549 Brassica carinata HOM05D001562 ORTHO05D001437 4.0e-13 77.8 59 76.3
A03p04400 Brassica napus HOM05D000868 ORTHO05D000711 4.0e-13 77.8 59 76.3
BraA03t09783Z Brassica rapa HOM05D001562 ORTHO05D001437 4.0e-13 77.8 59 76.3
CARHR203230 Cardamine hirsuta HOM05D001562 ORTHO05D001437 4.0e-13 77.8 60 73.3
A02p00310 Brassica napus HOM05D000868 ORTHO05D000711 5.2e-13 77.4 60 75.0
BolC3t13018H Brassica oleracea HOM05D001562 ORTHO05D001437 6.8e-13 77.0 57 77.2
Carub.0006s0852 Capsella rubella HOM05D001562 ORTHO05D001437 6.8e-13 77.0 60 73.3
Aa31LG3G17070 Aethionema arabicum HOM05D006522 ORTHO05D008183 2.2e-11 72.0 60 70.0
PGR004G1859 Punica granatum HOM05D001562 ORTHO05D001437 3.5e-09 64.7 57 61.4
Duzib187G0029 Durio zibethinus HOM05D001562 ORTHO05D001437 1.0e-08 63.2 60 58.3
Lalb_Chr08g0231241 Lupinus albus HOM05D001562 ORTHO05D001437 1.0e-08 63.2 64 54.7
THA.LOC104799150 Tarenaya hassleriana HOM05D001562 ORTHO05D001437 1.3e-08 62.8 60 60.0
CANSAT01G2571 Cannabis sativa HOM05D001562 ORTHO05D001437 1.7e-08 62.4 60 60.0
Carub.0008s2603 Capsella rubella HOM05D001562 ORTHO05D001437 1.7e-08 62.4 56 62.5
COL.COLO4_03579 Corchorus olitorius HOM05D001562 ORTHO05D001437 1.7e-08 62.4 60 60.0
Duzib147G1365 Durio zibethinus HOM05D001562 ORTHO05D001437 2.2e-08 62.0 60 60.0
Thecc.01G108700 Theobroma cacao HOM05D001562 ORTHO05D001437 2.2e-08 62.0 60 58.3
Thhalv10004419m.g Eutrema salsugineum HOM05D001562 ORTHO05D001437 2.9e-08 61.6 56 62.5
QL06p050588 Quercus lobata HOM05D001562 ORTHO05D001437 2.9e-08 61.6 60 58.3
Cfa020604 Carpinus fangiana HOM05D001562 ORTHO05D001437 3.8e-08 61.2 60 58.3
Ciclev10027075m.g Citrus clementina HOM05D001562 ORTHO05D001437 3.8e-08 61.2 60 58.3
Manes.12G139200 Manihot esculenta HOM05D001562 ORTHO05D001437 3.8e-08 61.2 56 60.7
Sp6g33340 Schrenkiella parvula HOM05D001562 ORTHO05D001437 5.0e-08 60.8 60 63.3
Sabra05G0066000 Salix brachista HOM05D001075 ORTHO05D003859 6.5e-08 60.5 56 60.7
CiPaw.03G137700 Carya illinoinensis HOM05D001562 ORTHO05D001437 8.5e-08 60.1 60 56.7
PSO675G4733 Papaver somniferum HOM05D001562 ORTHO05D001437 8.5e-08 60.1 60 56.7
Glyma.05G181900 Glycine max HOM05D001562 ORTHO05D001437 1.1e-07 59.7 59 57.6
TWI74G0250 Tripterygium wilfordii HOM05D001562 ORTHO05D001437 1.1e-07 59.7 60 56.7
EL10Ac6g15061 Beta vulgaris HOM05D001562 ORTHO05D001437 1.5e-07 59.3 57 56.1
FvH4_1g21760 Fragaria vesca HOM05D001562 ORTHO05D001437 1.5e-07 59.3 55 60.0
FAN23G3062 Fragaria x ananassa HOM05D001562 ORTHO05D001437 1.5e-07 59.3 55 60.0
Gohir.A11G198800 Gossypium hirsutum HOM05D001562 ORTHO05D001437 1.5e-07 59.3 60 55.0
Gorai.N023300 Gossypium raimondii HOM05D001562 ORTHO05D001437 1.5e-07 59.3 60 55.0
RcHm_v2.0_Chr2g0115631 Rosa chinensis HOM05D001562 ORTHO05D001437 1.5e-07 59.3 55 60.0
AUR62002043 Chenopodium quinoa HOM05D001562 ORTHO05D001437 1.9e-07 58.9 57 56.1
Eucgr.I00353 Eucalyptus grandis HOM05D001562 ORTHO05D001437 1.9e-07 58.9 57 59.6
THA.LOC104818483 Tarenaya hassleriana HOM05D001562 ORTHO05D001437 1.9e-07 58.9 57 59.6
TAR376G0632 Trochodendron aralioides HOM05D001562 ORTHO05D001437 2.5e-07 58.5 57 56.1
FAN28G2169 Fragaria x ananassa HOM05D001562 ORTHO05D001437 3.2e-07 58.2 55 60.0
Glyma.08G139600 Glycine max HOM05D001562 ORTHO05D001437 3.2e-07 58.2 59 55.9
Prupe.6G178300 Prunus persica HOM05D001562 ORTHO05D001437 3.2e-07 58.2 57 57.9
GSVIVG01022192001 Vitis vinifera HOM05D001562 ORTHO05D001437 3.2e-07 58.2 57 56.1
Eucgr.I00350 Eucalyptus grandis HOM05D001562 ORTHO05D001437 4.2e-07 57.8 57 57.9
FAN26G3173 Fragaria x ananassa HOM05D001562 ORTHO05D001437 4.2e-07 57.8 55 58.2
Psat5g088560 Pisum sativum HOM05D001562 ORTHO05D001437 4.2e-07 57.8 59 55.9
Gohir.D11G225400 Gossypium hirsutum HOM05D001562 ORTHO05D001437 5.5e-07 57.4 60 53.3
Atru.chr4.289 Acer truncatum HOM05D001562 ORTHO05D001437 7.2e-07 57.0 56 60.7
Sed0017119 Sechium edule HOM05D001562 ORTHO05D001437 7.2e-07 57.0 56 57.1
SGA_v2.0_scaffold47G17743 Striga asiatica HOM05D001562 ORTHO05D001437 7.2e-07 57.0 57 56.1
TPR.G21056 Trifolium pratense HOM05D001562 ORTHO05D001437 7.2e-07 57.0 59 54.2
TWI77G0791 Tripterygium wilfordii HOM05D001562 ORTHO05D001437 7.2e-07 57.0 60 55.0
ClCG07G009400 Citrullus lanatus HOM05D001562 ORTHO05D001437 9.4e-07 56.6 56 55.4
CsaV3_UNG186460 Cucumis sativus L. HOM05D001562 ORTHO05D001437 9.4e-07 56.6 60 53.3
Medtr3g087840 Medicago truncatula HOM05D001562 ORTHO05D001437 9.4e-07 56.6 59 54.2
MELO3C017576.2 Cucumis melo HOM05D001562 ORTHO05D001437 1.2e-06 56.2 56 55.4
MD15G1330000 Malus domestica HOM05D001562 ORTHO05D001437 1.2e-06 56.2 55 56.4
Hund13650 Selenicereus undatus HOM05D001562 ORTHO05D001437 1.2e-06 56.2 57 54.4
Aqoxy6G00533 Aquilegia oxysepala HOM05D001562 ORTHO05D001437 1.6e-06 55.8 60 53.3
Ca_16550_v3 Cicer arietinum L. HOM05D001562 ORTHO05D001437 1.6e-06 55.8 57 54.4
Dinv03876 Davidia involucrata HOM05D001562 ORTHO05D001437 2.1e-06 55.5 57 54.4
MD01G1022500 Malus domestica HOM05D001562 ORTHO05D001437 2.1e-06 55.5 55 58.2
Haze_25003 Corylus avellana HOM05D001562 ORTHO05D001437 2.7e-06 55.1 55 56.4
HanXRQChr05g0152251 Helianthus annuus HOM05D001562 ORTHO05D001437 2.7e-06 55.1 56 53.6
Lalb_Chr13g0296091 Lupinus albus HOM05D001562 ORTHO05D001437 2.7e-06 55.1 59 52.5
DCAR_014250 Daucus carota HOM05D001562 ORTHO05D001437 3.6e-06 54.7 55 56.4
MSTRG.3799 Avicennia marina HOM05D001562 ORTHO05D001437 4.7e-06 54.3 54 55.6
Migut.L00094 Erythranthe guttata HOM05D001562 ORTHO05D001437 4.7e-06 54.3 56 55.4
Phvul.002G262900 Phaseolus vulgaris HOM05D001562 ORTHO05D001437 4.7e-06 54.3 59 55.9
Potri.005G080600 Populus trichocarpa HOM05D001562 ORTHO05D001437 4.7e-06 54.3 56 55.4
Lj2A557T54 Lonicera japonica HOM05D001562 ORTHO05D001437 6.1e-06 53.9 57 50.9
Nitab4.5_0006636g0010 Nicotiana tabacum HOM05D001562 ORTHO05D001437 8.0e-06 53.5 57 54.4


User provided reference genes

Program Settings