Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g37116 Brassica carinata HOM05D006096 ORTHO05D007775 2.4e-240 835.1 431 100.0
BraA10t44776Z Brassica rapa HOM05D006096 ORTHO05D007775 5.1e-198 694.5 411 89.1
BcaC04g19312 Brassica carinata HOM05D006096 ORTHO05D007775 8.2e-196 687.2 410 88.3
BolC9t59480H Brassica oleracea HOM05D006096 ORTHO05D007775 9.1e-195 683.7 411 88.1
A10p27260 Brassica napus HOM05D006096 ORTHO05D007775 1.9e-192 676.0 415 86.7
C09p67070 Brassica napus HOM05D006096 ORTHO05D007775 6.3e-188 661.0 411 85.6
AT5G10320 Arabidopsis thaliana HOM05D006096 ORTHO05D007775 1.0e-182 643.7 411 82.0
AL6G20820 Arabidopsis lyrata HOM05D006096 ORTHO05D007775 7.2e-176 620.9 410 80.5
BcaC04g19315 Brassica carinata HOM05D006096 ORTHO05D007775 1.5e-165 586.6 311 96.1
Thhalv10013818m.g Eutrema salsugineum HOM05D006096 ORTHO05D007775 4.1e-163 578.6 415 75.4
Aa31LG3G16830 Aethionema arabicum HOM05D006096 ORTHO05D007775 1.7e-148 530.0 418 68.2
Sp6g33110 Schrenkiella parvula HOM05D006096 ORTHO05D007775 1.6e-135 486.9 314 83.4
CARHR202970 Cardamine hirsuta HOM05D006096 ORTHO05D007775 1.3e-119 434.1 397 61.7
CARHR202960 Cardamine hirsuta HOM05D006096 ORTHO05D007775 2.8e-119 433.0 301 74.4
Duzib187G1253 Durio zibethinus HOM05D006096 ORTHO05D007775 5.3e-118 428.7 410 57.1
Potri.005G073600 Populus trichocarpa HOM05D006096 ORTHO05D007775 2.0e-117 426.8 413 55.4
Cpa.g.sc55.89 Carica papaya HOM05D006096 ORTHO05D007775 3.4e-117 426.0 415 56.9
MD01G1033500 Malus domestica HOM05D006096 ORTHO05D007775 4.2e-115 419.1 415 55.7
Carub.0006s0879 Capsella rubella HOM05D006096 ORTHO05D007775 7.1e-115 418.3 293 76.8
Gohir.A10G085100 Gossypium hirsutum HOM05D006096 ORTHO05D007775 9.3e-115 417.9 415 54.2
vmacro18587 Vaccinium macrocarpon HOM05D006096 ORTHO05D007775 1.2e-114 417.5 415 56.6
PGSC0003DMG400016160 Solanum tuberosum HOM05D006096 ORTHO05D007775 2.1e-114 416.8 414 54.3
Gorai.011G113400 Gossypium raimondii HOM05D006096 ORTHO05D007775 2.7e-114 416.4 415 53.5
RcHm_v2.0_Chr2g0112761 Rosa chinensis HOM05D006096 ORTHO05D007775 2.7e-114 416.4 414 54.1
Sopen11g004830 Solanum pennellii HOM05D006096 ORTHO05D007775 2.7e-114 416.4 411 53.8
FvH4_1g20510 Fragaria vesca HOM05D006096 ORTHO05D007775 1.0e-113 414.5 413 55.0
Cc07_g14840 Coffea canephora HOM05D006096 ORTHO05D007775 1.7e-113 413.7 422 54.3
Prupe.6G191000 Prunus persica HOM05D006096 ORTHO05D007775 2.3e-113 413.3 415 55.4
Phvul.001G253200 Phaseolus vulgaris HOM05D006096 ORTHO05D007775 8.7e-113 411.4 409 53.5
Aqoxy6G00746 Aquilegia oxysepala HOM05D006096 ORTHO05D007775 1.5e-112 410.6 416 54.6
Atru.chr3.1373 Acer truncatum HOM05D006096 ORTHO05D007775 1.9e-112 410.2 412 53.9
Eucgr.H04751 Eucalyptus grandis HOM05D006096 ORTHO05D007775 2.5e-112 409.8 415 53.5
Glyma.18G015800 Glycine max HOM05D006096 ORTHO05D007775 2.5e-112 409.8 411 54.5
VMungo1383G2853 Vigna mungo HOM05D006096 ORTHO05D007775 1.6e-111 407.1 411 53.3
Medtr3g087010 Medicago truncatula HOM05D006096 ORTHO05D007775 2.1e-111 406.8 410 52.4
TWI53G1189 Tripterygium wilfordii HOM05D006096 ORTHO05D007775 6.2e-111 405.2 416 55.3
Psat5g090600 Pisum sativum HOM05D006096 ORTHO05D007775 1.4e-110 404.1 411 52.8
Glyma.11G241200 Glycine max HOM05D006096 ORTHO05D007775 1.8e-110 403.7 413 53.3
CSS0046442 Camellia sinensis var. sinensis HOM05D006096 ORTHO05D007775 2.4e-110 403.3 418 54.8
Lalb_Chr19g0127391 Lupinus albus HOM05D006096 ORTHO05D007775 1.3e-108 397.5 412 52.2
Sed0027583 Sechium edule HOM05D006096 ORTHO05D007775 1.3e-108 397.5 410 54.6
TPR.G15994 Trifolium pratense HOM05D006096 ORTHO05D007775 1.3e-108 397.5 411 51.1
CANSAT01G2346 Cannabis sativa HOM05D006096 ORTHO05D007775 4.9e-108 395.6 458 49.3
Nn1g05418 Nelumbo nucifera HOM05D006096 ORTHO05D007775 6.4e-108 395.2 419 53.0
MBI02_g02177_MAGBIO Magnolia biondii HOM05D006096 ORTHO05D007775 8.4e-108 394.8 418 53.3
Lj6g0005810 Lotus japonicus HOM05D006096 ORTHO05D007775 1.1e-107 394.4 419 53.0
Peaxi162Scf00381g01013 Petunia axillaris HOM05D006096 ORTHO05D007775 1.9e-107 393.7 416 52.4
Sc16g0000180 Simmondsia chinensis HOM05D006096 ORTHO05D007775 2.4e-107 393.3 420 51.4
TAR625G1553 Trochodendron aralioides HOM05D006096 ORTHO05D007775 2.7e-106 389.8 359 57.7
arahy.Tifrunner.gnm1.ann1.C4UPUA Arachis hypogaea HOM05D006096 ORTHO05D007775 1.8e-105 387.1 417 51.8
CAN.G905.37 Capsicum annuum HOM05D006096 ORTHO05D007775 5.6e-104 382.1 375 55.5
arahy.Tifrunner.gnm1.ann1.DD3ZZY Arachis hypogaea HOM05D006096 ORTHO05D007775 1.3e-103 380.9 444 49.1
Os04g0451100 Oryza sativa ssp. japonica HOM05D006096 ORTHO05D007775 9.0e-102 374.8 416 51.0
COL.COLO4_27275 Corchorus olitorius HOM05D006096 ORTHO05D007775 1.5e-101 374.0 418 53.1
Lsat_1_v5_gn_5_34320 Lactuca sativa HOM05D006096 ORTHO05D007775 2.0e-101 373.6 407 51.4
Actinidia28854 Actinidia chinensis HOM05D006096 ORTHO05D007775 2.6e-101 373.2 413 51.1
PSO210G0897 Papaver somniferum HOM05D006096 ORTHO05D007775 7.6e-101 371.7 412 48.8
ATR0684G225 Amborella trichopoda HOM05D006096 ORTHO05D007775 1.3e-100 370.9 422 48.6
AUR62001986 Chenopodium quinoa HOM05D006096 ORTHO05D007775 2.9e-100 369.8 450 46.9
EL10Ac6g15136 Beta vulgaris HOM05D006096 ORTHO05D007775 1.1e-99 367.9 448 47.3
Migut.H02345 Erythranthe guttata HOM05D006096 ORTHO05D007775 5.5e-99 365.5 409 51.3
Oeu033049.1 Olea europaea HOM05D006096 ORTHO05D007775 3.0e-97 359.8 403 51.4
Hund13600 Selenicereus undatus HOM05D006096 ORTHO05D007775 3.0e-97 359.8 495 44.6
FAN23G0863 Fragaria x ananassa HOM05D006096 ORTHO05D007775 5.7e-96 355.5 413 48.9
ECA246G2908 Erigeron canadensis HOM05D006096 ORTHO05D007775 2.1e-95 353.6 435 46.7
ClCG07G017370 Citrullus lanatus HOM05D006096 ORTHO05D007775 8.2e-95 351.7 534 41.2
Sabra05G0060100 Salix brachista HOM05D006096 ORTHO05D007775 2.0e-93 347.1 406 48.8
CARHR202980 Cardamine hirsuta HOM05D006096 ORTHO05D007775 1.3e-92 344.4 264 72.7
Rhsim08G0012600 Rhododendron simsii HOM05D006096 ORTHO05D007775 5.0e-92 342.4 413 49.9
Zm00001eb081250 Zea mays HOM05D006096 ORTHO05D007775 8.4e-92 341.7 283 60.4
QL06p048476 Quercus lobata HOM05D006096 ORTHO05D007775 3.9e-89 332.8 294 57.8
SGA_v2.0_scaffold111G31503 Striga asiatica HOM05D006096 ORTHO05D007775 2.4e-86 323.6 414 45.9
PSO447G0355 Papaver somniferum HOM05D006096 ORTHO05D007775 5.0e-84 315.8 410 43.4
FAN19G2919 Fragaria x ananassa HOM05D006096 ORTHO05D007775 1.4e-83 314.3 411 47.4
Nitab4.5_0004570g0020 Nicotiana tabacum HOM05D006096 ORTHO05D007775 6.7e-81 305.4 307 54.4
CsaV3_4G004600 Cucumis sativus L. HOM05D006096 ORTHO05D007775 3.7e-79 299.7 300 55.0
Haze_24882 Corylus avellana HOM05D006096 ORTHO05D007775 6.9e-78 295.4 457 42.7
HPP92_011214 Vanilla planifolia HOM05D006096 ORTHO05D007775 6.9e-78 295.4 424 42.5
Manes.13G095500 Manihot esculenta HOM05D006096 ORTHO05D007775 2.6e-77 293.5 325 51.7
SalBow3G4176 Salvia bowleyana HOM05D006096 ORTHO05D007775 4.2e-75 286.2 449 41.9
CsaV3_UNG122970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 7.2e-75 285.4 324 50.6
Thecc.01G097900 Theobroma cacao HOM05D006096 ORTHO05D007775 2.1e-74 283.9 318 52.2
Gohir.D10G103900 Gossypium hirsutum HOM05D006096 ORTHO05D007775 4.7e-74 282.7 322 49.7
Pp3c26_3770 Physcomitrium patens HOM05D006096 ORTHO05D007775 1.0e-73 281.6 425 40.2
CiPaw.03G143900 Carya illinoinensis HOM05D006096 ORTHO05D007775 1.4e-73 281.2 333 48.6
Dinv08841 Davidia involucrata HOM05D006096 ORTHO05D007775 2.3e-73 280.4 328 50.3
unitig_899.g14550 Utricularia gibba HOM05D006096 ORTHO05D007775 6.7e-73 278.9 346 46.8
QL06p048506 Quercus lobata HOM05D006096 ORTHO05D007775 2.6e-72 276.9 341 48.1
Mapoly0077s0016 Marchantia polymorpha HOM05D006096 ORTHO05D007775 7.4e-72 275.4 467 38.5
Solyc11g009060.2 Solanum lycopersicum HOM05D006096 ORTHO05D007775 7.4e-72 275.4 318 48.4
Ciclev10026196m.g Citrus clementina HOM05D006096 ORTHO05D007775 1.3e-71 274.6 320 50.0
Cfa002624 Carpinus fangiana HOM05D006096 ORTHO05D007775 2.6e-69 266.9 324 47.8
AUR62003818 Chenopodium quinoa HOM05D006096 ORTHO05D007775 5.9e-69 265.8 272 51.5
Pp3c3_14090 Physcomitrium patens HOM05D006096 ORTHO05D007775 5.2e-65 252.7 411 40.9
CBR_g26374 Chara braunii HOM05D006096 ORTHO05D007775 8.8e-65 251.9 320 45.3
MELO3C017606.2 Cucumis melo HOM05D006096 ORTHO05D007775 5.7e-64 249.2 577 32.8
FAN28G1526 Fragaria x ananassa HOM05D006096 ORTHO05D007775 1.4e-62 244.6 429 40.1
DCAR_014211 Daucus carota HOM05D006096 ORTHO05D007775 7.0e-62 242.3 298 46.6
HanXRQChr02g0032011 Helianthus annuus HOM05D006096 ORTHO05D007775 1.0e-60 238.4 316 46.5
Haze_24873 Corylus avellana HOM05D006096 ORTHO05D007775 6.5e-60 235.7 434 38.0
CsaV3_UNG160190 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.4e-57 228.0 148 74.3
CBR_g53530 Chara braunii HOM05D006096 ORTHO05D007775 3.1e-54 216.9 259 44.4
AagrBONN_evm.TU.Sc2ySwM_344.1220 Anthoceros agrestis HOM05D006096 ORTHO05D007775 5.0e-52 209.5 321 41.7
Ca_16518_v3 Cicer arietinum L. HOM05D006096 ORTHO05D007775 5.5e-51 206.1 320 39.1
SMO301G0024 Selaginella moellendorffii HOM05D006096 ORTHO05D007775 6.8e-49 199.1 183 55.2
HanXRQChr15g0477621 Helianthus annuus HOM05D006096 ORTHO05D007775 1.1e-46 191.8 290 41.0
Nitab4.5_0000743g0130 Nicotiana tabacum HOM05D006096 ORTHO05D007775 1.8e-46 191.0 410 34.9
CsaV3_UNG223570 Cucumis sativus L. HOM05D006096 ORTHO05D007775 6.1e-42 176.0 230 43.9
Carub.0006s0878 Capsella rubella HOM05D006096 ORTHO05D007775 2.7e-37 160.6 85 91.8
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 4.3e-35 153.3 380 31.6
MSTRG.23356 Avicennia marina HOM05D006096 ORTHO05D007775 1.5e-32 144.8 312 36.2
Cre17.g719050 Chlamydomonas reinhardtii HOM05D006096 ORTHO05D007775 1.5e-32 144.8 279 34.4
GSVIVG01006632001 Vitis vinifera HOM05D006096 ORTHO05D007775 1.7e-31 141.4 94 69.1
QL06p048511 Quercus lobata HOM05D006096 ORTHO05D007775 4.9e-31 139.8 93 69.9
BcaB02g08416 Brassica carinata HOM05D006096 ORTHO05D007775 4.6e-29 133.3 79 84.8
Gohir.D10G103800 Gossypium hirsutum HOM05D006096 ORTHO05D007775 5.4e-22 109.8 77 64.9
SEGI_01830 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 7.3e-19 99.4 123 41.5
HanXRQChr02g0032001 Helianthus annuus HOM05D006096 ORTHO05D007775 4.0e-17 93.6 65 66.2
Sp1g28000 Schrenkiella parvula HOM05D006096 ORTHO05D007775 1.7e-15 88.2 73 64.4
Ah.02g123840 Amaranthus hybridus HOM05D006096 ORTHO05D007775 2.4e-14 84.3 64 59.4
SEGI_02986 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 9.2e-14 82.4 61 60.7
Actinidia28243 Actinidia chinensis HOM05D006096 ORTHO05D009823 1.7e-12 78.2 170 34.7
Cc03_g11790 Coffea canephora HOM05D006096 ORTHO05D007775 1.1e-11 75.5 91 44.0
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 5.6e-11 73.2 242 28.1
CsaV3_UNG124970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 2.6e-08 64.3 72 47.2
Nitab4.5_0004570g0030 Nicotiana tabacum HOM05D006096 ORTHO05D007775 2.6e-08 64.3 83 39.8
CsaV3_UNG160180 Cucumis sativus L. HOM05D006096 ORTHO05D007775 3.8e-07 60.5 98 41.8
Aa31LG7G15400 Aethionema arabicum HOM05D006096 ORTHO05D009377 4.9e-07 60.1 98 43.9
RcHm_v2.0_Chr4g0406191 Rosa chinensis HOM05D006096 ORTHO05D007775 4.9e-07 60.1 59 62.7


User provided reference genes

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