Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g37047 Brassica carinata HOM05D001340 ORTHO05D002318 2.3e-35 151.8 81 100.0
BcaC06g32040 Brassica carinata HOM05D001340 ORTHO05D002318 1.0e-27 126.3 111 69.4
BcaB06g29452 Brassica carinata HOM05D001340 ORTHO05D002318 1.7e-22 109.0 138 53.6
AL4G46910 Arabidopsis lyrata HOM05D001340 ORTHO05D002318 3.9e-22 107.8 138 53.6
BolC4t21693H Brassica oleracea HOM05D001340 ORTHO05D002318 6.6e-22 107.1 138 52.9
Sp4g29290 Schrenkiella parvula HOM05D001340 ORTHO05D002318 1.1e-21 106.3 140 52.1
BcaB02g08784 Brassica carinata HOM05D001340 ORTHO05D002318 1.5e-21 105.9 140 51.4
Thhalv10001400m.g Eutrema salsugineum HOM05D001340 ORTHO05D002318 7.3e-21 103.6 140 51.4
BolC9t60091H Brassica oleracea HOM05D001340 ORTHO05D002318 2.8e-20 101.7 98 66.3
C04p00590 Brassica napus HOM05D001340 ORTHO05D002318 4.7e-20 100.9 138 50.7
BraA05t19053Z Brassica rapa HOM05D001340 ORTHO05D002318 4.7e-20 100.9 138 50.7
A05p00550 Brassica napus HOM05D001340 ORTHO05D002318 6.2e-20 100.5 138 50.7
AT2G47350 Arabidopsis thaliana HOM05D001340 ORTHO05D002318 8.0e-20 100.1 138 52.2
BcaB01g03171 Brassica carinata HOM05D001340 ORTHO05D002318 1.8e-19 99.0 140 48.6
CARHR142740 Cardamine hirsuta HOM05D001340 ORTHO05D002318 2.3e-19 98.6 138 51.4
Carub.0004s3007 Capsella rubella HOM05D001340 ORTHO05D002318 4.0e-19 97.8 138 50.0
C09p11420 Brassica napus HOM05D001340 ORTHO05D002318 6.8e-19 97.1 98 62.2
C03p30920 Brassica napus HOM05D001340 ORTHO05D002318 1.5e-18 95.9 138 47.8
BcaC01g05034 Brassica carinata HOM05D001340 ORTHO05D002318 2.6e-18 95.1 138 47.8
BolC3t15443H Brassica oleracea HOM05D001340 ORTHO05D002318 2.6e-18 95.1 138 47.8
A03p25920 Brassica napus HOM05D001340 ORTHO05D002318 2.9e-17 91.7 98 58.2
BraA03t11809Z Brassica rapa HOM05D001340 ORTHO05D002318 2.9e-17 91.7 98 58.2
C09p65280 Brassica napus HOM05D001340 ORTHO05D002318 5.4e-16 87.4 44 95.5
Aa31LG1G28650 Aethionema arabicum HOM05D001340 ORTHO05D002318 1.6e-15 85.9 140 43.6
Ah.02g112340 Amaranthus hybridus HOM05D001340 ORTHO05D002318 1.4e-11 72.8 67 64.2
THA.LOC104822548 Tarenaya hassleriana HOM05D001340 ORTHO05D002318 7.5e-10 67.0 42 76.2
MSTRG.18095 Avicennia marina HOM05D001340 ORTHO05D002318 2.2e-09 65.5 111 40.5
Thecc.01G314700 Theobroma cacao HOM05D001340 ORTHO05D002318 1.4e-08 62.8 139 36.7
FvH4_5g39030 Fragaria vesca HOM05D001340 ORTHO05D002318 4.1e-08 61.2 96 46.9
AUR62024641 Chenopodium quinoa HOM05D001340 ORTHO05D002318 7.1e-08 60.5 96 43.8
FAN13G2122 Fragaria x ananassa HOM05D001340 ORTHO05D002318 9.2e-08 60.1 96 46.9
SGA_v2.0_scaffold376G50288 Striga asiatica HOM05D001340 ORTHO05D002318 9.2e-08 60.1 97 45.4
Duzib138G1716 Durio zibethinus HOM05D001340 ORTHO05D002318 1.2e-07 59.7 139 35.3
Sc17g0000430 Simmondsia chinensis HOM05D001340 ORTHO05D002318 1.2e-07 59.7 97 43.3
AUR62011794 Chenopodium quinoa HOM05D001340 ORTHO05D002318 2.1e-07 58.9 96 41.7
Hma1.2p1_0486F.1_g163370 Hydrangea macrophylla HOM05D001340 ORTHO05D002318 2.1e-07 58.9 97 44.3
COL.COLO4_23221 Corchorus olitorius HOM05D001340 ORTHO05D002318 2.7e-07 58.5 139 35.3
FAN04G0292 Fragaria x ananassa HOM05D001340 ORTHO05D002318 2.7e-07 58.5 95 46.3
HanXRQChr04g0106191 Helianthus annuus HOM05D001340 ORTHO05D002318 2.7e-07 58.5 109 41.3
RcHm_v2.0_Chr7g0241001 Rosa chinensis HOM05D001340 ORTHO05D002318 2.7e-07 58.5 98 44.9
TAR633G1266 Trochodendron aralioides HOM05D001340 ORTHO05D002318 2.7e-07 58.5 97 44.3
Gohir.A11G273800 Gossypium hirsutum HOM05D001340 ORTHO05D002318 3.5e-07 58.2 99 43.4
Manes.05G004500 Manihot esculenta HOM05D001340 ORTHO05D002318 3.5e-07 58.2 141 36.2
Thecc.05G323500 Theobroma cacao HOM05D001340 ORTHO05D002318 3.5e-07 58.2 98 42.9
TAR362G0447 Trochodendron aralioides HOM05D001340 ORTHO05D002318 4.6e-07 57.8 97 43.3
arahy.Tifrunner.gnm1.ann1.IPGA62 Arachis hypogaea HOM05D001340 ORTHO05D002318 6.0e-07 57.4 105 39.0
Cfa005783 Carpinus fangiana HOM05D001340 ORTHO05D002318 7.8e-07 57.0 97 43.3
TAR365G0581 Trochodendron aralioides HOM05D001340 ORTHO05D002318 7.8e-07 57.0 99 41.4
Actinidia20989 Actinidia chinensis HOM05D001340 ORTHO05D002318 1.0e-06 56.6 98 42.9
Duzib177G1143 Durio zibethinus HOM05D001340 ORTHO05D002318 1.0e-06 56.6 97 44.3
CAN.G100.66 Capsicum annuum HOM05D001340 ORTHO05D002318 1.3e-06 56.2 99 42.4
Lj5A331T38 Lonicera japonica HOM05D001340 ORTHO05D002318 1.7e-06 55.8 109 39.4
MD03G1292700 Malus domestica HOM05D001340 ORTHO05D002318 1.7e-06 55.8 97 44.3
Solyc01g079350.3 Solanum lycopersicum HOM05D001340 ORTHO05D002318 1.7e-06 55.8 97 43.3
Sopen01g031130 Solanum pennellii HOM05D001340 ORTHO05D002318 1.7e-06 55.8 97 43.3
GSVIVG01028133001 Vitis vinifera HOM05D001340 ORTHO05D002318 1.7e-06 55.8 97 43.3
Cpa.g.sc18.58 Carica papaya HOM05D001340 ORTHO05D002318 2.3e-06 55.5 139 35.3
Cpa.g.sc48.166 Carica papaya HOM05D001340 ORTHO05D002318 2.3e-06 55.5 97 40.2
MELO3C015918.2 Cucumis melo HOM05D001340 ORTHO05D002318 2.3e-06 55.5 97 41.2
CsaV3_7G030020 Cucumis sativus L. HOM05D001340 ORTHO05D002318 2.3e-06 55.5 97 41.2
PGSC0003DMG400009046 Solanum tuberosum HOM05D001340 ORTHO05D002318 2.3e-06 55.5 97 42.3
GSVIVG01031244001 Vitis vinifera HOM05D001340 ORTHO05D002318 2.3e-06 55.5 98 41.8
CANSAT25G2668 Cannabis sativa HOM05D001340 ORTHO05D002318 3.0e-06 55.1 99 43.4
Gohir.A07G128900 Gossypium hirsutum HOM05D001340 ORTHO05D002318 3.0e-06 55.1 98 42.9
Gohir.D07G133300 Gossypium hirsutum HOM05D001340 ORTHO05D002318 3.0e-06 55.1 98 42.9
Gorai.001G144600 Gossypium raimondii HOM05D001340 ORTHO05D002318 3.0e-06 55.1 98 42.9
Nitab4.5_0003540g0120 Nicotiana tabacum HOM05D001340 ORTHO05D002318 3.0e-06 55.1 97 43.3
Gohir.D11G283900 Gossypium hirsutum HOM05D001340 ORTHO05D002318 3.9e-06 54.7 97 42.3
Gorai.007G306800 Gossypium raimondii HOM05D001340 ORTHO05D002318 3.9e-06 54.7 97 42.3
MBI18_g17310_MAGBIO Magnolia biondii HOM05D001340 ORTHO05D002318 3.9e-06 54.7 97 41.2
Peaxi162Scf00691g00418 Petunia axillaris HOM05D001340 ORTHO05D002318 3.9e-06 54.7 97 43.3
Atru.chr5.981 Acer truncatum HOM05D001340 ORTHO05D002318 5.1e-06 54.3 97 43.3
Actinidia17907 Actinidia chinensis HOM05D001340 ORTHO05D002318 5.1e-06 54.3 97 42.3
MBI19_g40072_MAGBIO Magnolia biondii HOM05D001340 ORTHO05D002318 5.1e-06 54.3 97 41.2
TWI56G0128 Tripterygium wilfordii HOM05D001340 ORTHO05D002318 5.1e-06 54.3 97 40.2
Ciclev10003914m.g Citrus clementina HOM05D001340 ORTHO05D002318 6.6e-06 53.9 98 42.9
COL.COLO4_05547 Corchorus olitorius HOM05D001340 ORTHO05D002318 6.6e-06 53.9 99 41.4
Ciclev10023762m.g Citrus clementina HOM05D001340 ORTHO05D002318 8.6e-06 53.5 141 34.0
Haze_05057 Corylus avellana HOM05D001340 ORTHO05D002318 8.6e-06 53.5 97 41.2
Dinv10110 Davidia involucrata HOM05D001340 ORTHO05D002318 8.6e-06 53.5 88 46.6
Duzib133G1523 Durio zibethinus HOM05D001340 ORTHO05D002318 8.6e-06 53.5 139 34.5
Peaxi162Scf00058g00268 Petunia axillaris HOM05D001340 ORTHO05D002318 8.6e-06 53.5 109 37.6
Potri.013G008300 Populus trichocarpa HOM05D001340 ORTHO05D002318 8.6e-06 53.5 97 40.2


User provided reference genes

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