Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g37001 Brassica carinata HOM05D006549 ORTHO05D008080 1.0e-149 533.5 297 100.0
BraA10t44605Z Brassica rapa HOM05D006549 ORTHO05D008080 7.0e-122 441.0 364 73.6
C09p64480 Brassica napus HOM05D006549 ORTHO05D008080 2.3e-120 436.0 362 71.0
BolC9t59282H Brassica oleracea HOM05D006549 ORTHO05D008080 2.3e-120 436.0 362 71.0
BraA03t09898Z Brassica rapa HOM05D006549 ORTHO05D008080 2.3e-117 426.0 359 67.7
BolC3t13156H Brassica oleracea HOM05D006549 ORTHO05D008080 3.4e-116 422.2 355 67.9
A10p25410 Brassica napus HOM05D006549 ORTHO05D008080 2.2e-115 419.5 363 69.4
BcaB01g05403 Brassica carinata HOM05D006549 ORTHO05D008080 2.7e-113 412.5 406 60.1
Sp6g31230 Schrenkiella parvula HOM05D006549 ORTHO05D008080 8.1e-110 401.0 385 62.3
CARHR200690 Cardamine hirsuta HOM05D006549 ORTHO05D008080 1.3e-107 393.7 363 65.0
A03p05610 Brassica napus HOM05D006549 ORTHO05D008080 1.7e-107 393.3 346 65.6
AL6G23210 Arabidopsis lyrata HOM05D006549 ORTHO05D008080 2.1e-105 386.3 362 63.0
Thhalv10013724m.g Eutrema salsugineum HOM05D006549 ORTHO05D008080 2.7e-105 386.0 398 58.5
Carub.0006s1091 Capsella rubella HOM05D006549 ORTHO05D008080 1.1e-103 380.6 367 62.4
Aa31LG3G14820 Aethionema arabicum HOM05D006549 ORTHO05D008080 3.3e-103 379.0 377 62.1
AT5G12410 Arabidopsis thaliana HOM05D006549 ORTHO05D008080 9.6e-103 377.5 375 62.1
C03p06560 Brassica napus HOM05D006549 ORTHO05D008080 9.9e-100 367.5 342 64.3
THA.LOC104811185 Tarenaya hassleriana HOM05D006549 ORTHO05D008080 3.6e-94 349.0 363 56.7
Duzib170G0947 Durio zibethinus HOM05D006549 ORTHO05D008080 5.8e-84 315.1 363 50.7
Thecc.09G240800 Theobroma cacao HOM05D006549 ORTHO05D008080 5.8e-84 315.1 365 51.5
Gorai.006G126000 Gossypium raimondii HOM05D006549 ORTHO05D008080 7.1e-82 308.1 366 49.7
CiPaw.13G153800 Carya illinoinensis HOM05D006549 ORTHO05D008080 2.1e-81 306.6 361 52.6
Dinv22152 Davidia involucrata HOM05D006549 ORTHO05D008080 6.0e-81 305.1 354 49.4
Sc09g0000890 Simmondsia chinensis HOM05D006549 ORTHO05D008080 7.9e-81 304.7 366 51.1
Gohir.D09G108300 Gossypium hirsutum HOM05D006549 ORTHO05D008080 1.8e-80 303.5 366 49.2
Gohir.A09G111700 Gossypium hirsutum HOM05D006549 ORTHO05D008080 6.7e-80 301.6 365 49.9
AUR62000165 Chenopodium quinoa HOM05D006549 ORTHO05D008080 1.1e-79 300.8 360 50.0
Eucgr.B03712 Eucalyptus grandis HOM05D006549 ORTHO05D008080 4.3e-79 298.9 362 48.6
Nitab4.5_0006878g0020 Nicotiana tabacum HOM05D006549 ORTHO05D008080 5.6e-79 298.5 387 47.0
FAN11G3700 Fragaria x ananassa HOM05D006549 ORTHO05D008080 1.3e-78 297.4 378 47.1
Potri.009G049700 Populus trichocarpa HOM05D006549 ORTHO05D008080 1.6e-78 297.0 362 50.0
FvH4_3g28330 Fragaria vesca HOM05D006549 ORTHO05D008080 2.1e-78 296.6 378 46.8
Potri.001G254600 Populus trichocarpa HOM05D006549 ORTHO05D008080 6.2e-78 295.0 361 47.9
CANSAT54G0570 Cannabis sativa HOM05D006549 ORTHO05D008080 8.2e-78 294.7 361 50.7
Ciclev10015584m.g Citrus clementina HOM05D006549 ORTHO05D008080 1.4e-77 293.9 379 48.8
GSVIVG01031548001 Vitis vinifera HOM05D006549 ORTHO05D008080 3.1e-77 292.7 376 49.2
PGR102G0709 Punica granatum HOM05D006549 ORTHO05D008080 4.0e-77 292.4 374 47.1
CSS0047891 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 1.2e-76 290.8 360 47.8
HanXRQChr14g0433001 Helianthus annuus HOM05D006549 ORTHO05D008080 2.0e-76 290.0 333 52.6
Actinidia06932 Actinidia chinensis HOM05D006549 ORTHO05D008080 2.6e-76 289.7 361 47.4
Manes.14G005500 Manihot esculenta HOM05D006549 ORTHO05D008080 3.4e-76 289.3 380 47.9
MD03G1170300 Malus domestica HOM05D006549 ORTHO05D008080 4.5e-76 288.9 387 48.3
Hund07453 Selenicereus undatus HOM05D006549 ORTHO05D008080 4.5e-76 288.9 370 50.3
MD11G1187800 Malus domestica HOM05D006549 ORTHO05D008080 5.8e-76 288.5 375 49.9
EL10Ac4g10185 Beta vulgaris HOM05D006549 ORTHO05D008080 1.0e-75 287.7 361 49.0
Migut.N02355 Erythranthe guttata HOM05D006549 ORTHO05D008080 1.0e-75 287.7 371 47.4
FAN21G3651 Fragaria x ananassa HOM05D006549 ORTHO05D008080 1.3e-75 287.3 383 46.0
Nitab4.5_0002726g0080 Nicotiana tabacum HOM05D006549 ORTHO05D008080 1.3e-75 287.3 358 46.9
ClCG03G013060 Citrullus lanatus HOM05D006549 ORTHO05D008080 1.7e-75 287.0 369 47.2
AUR62039846 Chenopodium quinoa HOM05D006549 ORTHO05D008080 2.2e-75 286.6 363 46.6
RcHm_v2.0_Chr5g0051211 Rosa chinensis HOM05D006549 ORTHO05D008080 3.8e-75 285.8 378 47.6
Actinidia16353 Actinidia chinensis HOM05D006549 ORTHO05D008080 1.9e-74 283.5 355 48.2
Sabra16G0155200 Salix brachista HOM05D006549 ORTHO05D008080 4.2e-74 282.3 426 42.0
TWI39G1226 Tripterygium wilfordii HOM05D006549 ORTHO05D008080 5.5e-74 282.0 368 47.6
ECA238G1745 Erigeron canadensis HOM05D006549 ORTHO05D008080 9.3e-74 281.2 348 47.7
vmacro04120 Vaccinium macrocarpon HOM05D006549 ORTHO05D008080 1.2e-73 280.8 330 52.1
CsaV3_1G043000 Cucumis sativus L. HOM05D006549 ORTHO05D008080 2.1e-73 280.0 373 48.3
Sed0027042 Sechium edule HOM05D006549 ORTHO05D008080 2.1e-73 280.0 373 46.1
arahy.Tifrunner.gnm1.ann1.9560XR Arachis hypogaea HOM05D006549 ORTHO05D008080 3.5e-73 279.3 352 44.9
CAN.G633.4 Capsicum annuum HOM05D006549 ORTHO05D008080 7.9e-73 278.1 386 44.6
Dinv36213 Davidia involucrata HOM05D006549 ORTHO05D008080 7.9e-73 278.1 343 52.8
Sopen11g024900 Solanum pennellii HOM05D006549 ORTHO05D008080 1.3e-72 277.3 383 45.4
Cc01_g06100 Coffea canephora HOM05D006549 ORTHO05D008080 2.3e-72 276.6 374 45.5
COL.COLO4_36476 Corchorus olitorius HOM05D006549 ORTHO05D008080 2.3e-72 276.6 366 47.8
arahy.Tifrunner.gnm1.ann1.2W4GIE Arachis hypogaea HOM05D006549 ORTHO05D008080 3.0e-72 276.2 363 43.8
Lsat_1_v5_gn_2_29261 Lactuca sativa HOM05D006549 ORTHO05D008080 3.0e-72 276.2 353 51.0
Sabra09G0036200 Salix brachista HOM05D006549 ORTHO05D008080 3.0e-72 276.2 417 44.4
Nn7g36445 Nelumbo nucifera HOM05D006549 ORTHO05D008080 6.7e-72 275.0 384 44.3
PGSC0003DMG400031244 Solanum tuberosum HOM05D006549 ORTHO05D008080 8.7e-72 274.6 381 45.1
Haze_23190 Corylus avellana HOM05D006549 ORTHO05D008080 1.9e-71 273.5 430 42.3
Peaxi162Scf00004g03918 Petunia axillaris HOM05D006549 ORTHO05D008080 3.3e-71 272.7 343 48.7
Oeu025891.1 Olea europaea HOM05D006549 ORTHO05D008080 4.3e-71 272.3 378 44.4
Solyc11g065180.2 Solanum lycopersicum HOM05D006549 ORTHO05D008080 1.3e-70 270.8 382 45.3
unitig_27.g25003 Utricularia gibba HOM05D006549 ORTHO05D008080 1.1e-69 267.7 343 47.5
Prupe.4G256800 Prunus persica HOM05D006549 ORTHO05D008080 1.8e-69 266.9 452 40.9
VMungo1215G3210 Vigna mungo HOM05D006549 ORTHO05D008080 3.1e-69 266.2 374 44.1
Phvul.002G033900 Phaseolus vulgaris HOM05D006549 ORTHO05D008080 4.1e-69 265.8 367 44.4
MSTRG.17620 Avicennia marina HOM05D006549 ORTHO05D008080 5.3e-69 265.4 368 43.8
Aqoxy1G00310 Aquilegia oxysepala HOM05D006549 ORTHO05D008080 1.2e-68 264.2 344 50.6
Atru.chr3.2633 Acer truncatum HOM05D006549 ORTHO05D008080 2.6e-68 263.1 347 46.1
SGA_v2.0_scaffold42G16082 Striga asiatica HOM05D006549 ORTHO05D008080 5.9e-68 261.9 364 47.8
Glyma.11G015900 Glycine max HOM05D006549 ORTHO05D008080 1.0e-67 261.2 367 45.8
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 1.0e-67 261.2 354 44.4
DCAR_000660 Daucus carota HOM05D006549 ORTHO05D008080 1.7e-67 260.4 410 43.2
Glyma.01G226800 Glycine max HOM05D006549 ORTHO05D008080 6.5e-67 258.5 375 43.2
Medtr5g009010 Medicago truncatula HOM05D006549 ORTHO05D008080 7.2e-66 255.0 367 42.5
ATR0721G160 Amborella trichopoda HOM05D006549 ORTHO05D008080 1.4e-64 250.8 339 44.5
CDE08G0181 Ceratophyllum demersum HOM05D006549 ORTHO05D008080 1.8e-64 250.4 330 45.2
Lalb_Chr09g0320561 Lupinus albus HOM05D006549 ORTHO05D008080 6.7e-64 248.4 393 41.0
QL01p018141 Quercus lobata HOM05D006549 ORTHO05D008080 4.3e-63 245.7 384 45.1
TPR.G38023 Trifolium pratense HOM05D006549 ORTHO05D008080 4.3e-63 245.7 374 42.2
Os11g0568600 Oryza sativa ssp. japonica HOM05D006549 ORTHO05D008080 5.7e-63 245.4 357 41.7
Zm00001eb200070 Zea mays HOM05D006549 ORTHO05D008080 2.4e-61 240.0 375 40.0
Psat2g186960 Pisum sativum HOM05D000745 ORTHO05D000641 9.1e-61 238.0 365 42.7
PSO384G3463 Papaver somniferum HOM05D006549 ORTHO05D008080 1.7e-59 233.8 353 44.2
PSO339G6663 Papaver somniferum HOM05D006549 ORTHO05D008080 8.5e-59 231.5 352 44.0
Ca_24492_v3 Cicer arietinum L. HOM05D000745 ORTHO05D000641 7.2e-58 228.4 358 40.8
MBI13_g04769_MAGBIO Magnolia biondii HOM05D006549 ORTHO05D008080 9.4e-58 228.0 389 41.9
LjContig00222g0000121 Lotus japonicus HOM05D006549 ORTHO05D008080 3.9e-56 222.6 446 35.0
Ah.06g193800 Amaranthus hybridus HOM05D006549 ORTHO05D008080 5.1e-56 222.2 305 45.9
QL01p018092 Quercus lobata HOM05D006549 ORTHO05D008080 1.8e-53 213.8 202 60.4
SEGI_14205 Sequoiadendron giganteum HOM05D006549 ORTHO05D008080 1.5e-52 210.7 337 40.7
Lju41A40T23 Lonicera japonica HOM05D006549 ORTHO05D008080 3.2e-50 203.0 318 43.7
Oeu061298.1 Olea europaea HOM05D006549 ORTHO05D008080 2.2e-46 190.3 311 41.8
FAN16G0297 Fragaria x ananassa HOM05D006549 ORTHO05D008080 1.2e-41 174.5 162 56.8
BolC3t13160H Brassica oleracea HOM05D006549 ORTHO05D008080 6.3e-38 162.2 84 92.9
AagrBONN_evm.TU.Sc2ySwM_228.1610 Anthoceros agrestis HOM05D006549 ORTHO05D008080 2.9e-35 153.3 322 33.9
TAR633G0410 Trochodendron aralioides HOM05D006549 ORTHO05D008080 5.2e-32 142.5 141 56.7
Mapoly0091s0083 Marchantia polymorpha HOM05D006549 ORTHO05D008080 9.1e-29 131.7 361 32.4
Hma1.2p1_1043F.1_g251200 Hydrangea macrophylla HOM05D006549 ORTHO05D008080 2.7e-28 130.2 135 51.1
Pp3c3_2270 Physcomitrium patens HOM05D006549 ORTHO05D008080 2.3e-27 127.1 323 32.2
Duzib168G0228 Durio zibethinus HOM05D006549 ORTHO05D008080 1.5e-26 124.4 183 42.1
SHI46597 Sapria himalayana HOM05D006549 ORTHO05D008080 5.5e-26 122.5 302 30.1
SMO013G0006 Selaginella moellendorffii HOM05D006549 ORTHO05D008080 7.2e-26 122.1 325 30.2
MELO3C015170.2 Cucumis melo HOM05D006549 ORTHO05D008080 3.6e-25 119.8 84 67.9
Cc01_g06170 Coffea canephora HOM05D006549 ORTHO05D008080 3.2e-21 106.7 96 58.3
Cpa.g.sc84.3 Carica papaya HOM05D006549 ORTHO05D008080 2.9e-19 100.1 56 85.7
HPP92_011577 Vanilla planifolia HOM05D006549 ORTHO05D008080 1.4e-16 91.3 182 36.3
Cpa.g.c41750 Carica papaya HOM05D006549 ORTHO05D008080 6.8e-16 89.0 56 71.4
MELO3C029487.2 Cucumis melo HOM05D006549 ORTHO05D008080 1.9e-13 80.9 46 82.6
CBR_g300 Chara braunii HOM05D006549 ORTHO05D008080 3.0e-11 73.6 228 26.3
PRCOL_00001563 Prasinoderma coloniale HOM05D006549 ORTHO05D008080 1.1e-10 71.6 179 28.5
CSS0036252 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 4.4e-07 59.7 44 65.9
MCO09G159 Micromonas commoda HOM05D006549 ORTHO05D008080 7.5e-07 58.9 209 25.4


User provided reference genes

Program Settings