Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36986 Brassica carinata HOM05D007296 ORTHO05D009201 1.2e-61 240.0 154 100.0
A10p24110 Brassica napus HOM05D007296 ORTHO05D009201 1.5e-51 206.5 158 74.7
BraA10t44476Z Brassica rapa HOM05D007296 ORTHO05D009201 4.4e-51 204.9 150 76.0
C09p62750 Brassica napus HOM05D007296 ORTHO05D009201 2.9e-50 202.2 158 73.4
BolC9t59112H Brassica oleracea HOM05D007296 ORTHO05D009201 6.4e-50 201.1 158 72.8
AT5G14410 Arabidopsis thaliana HOM05D007296 ORTHO05D009201 2.0e-43 179.5 157 65.0
Carub.0006s1259 Capsella rubella HOM05D007296 ORTHO05D009201 4.4e-43 178.3 135 71.9
Sp6g29610 Schrenkiella parvula HOM05D007296 ORTHO05D009201 3.7e-42 175.3 135 70.4
AL6G25130 Arabidopsis lyrata HOM05D007296 ORTHO05D009201 2.4e-41 172.6 135 68.9
Thhalv10014918m.g Eutrema salsugineum HOM05D007296 ORTHO05D009201 2.7e-40 169.1 152 63.8
CARHR198900 Cardamine hirsuta HOM05D007296 ORTHO05D009201 2.3e-39 166.0 135 67.4
Aa31LG11G15190 Aethionema arabicum HOM05D007296 ORTHO05D009201 3.7e-34 148.7 140 60.7
THA.LOC104821171 Tarenaya hassleriana HOM05D007296 ORTHO05D009201 1.7e-15 86.7 65 66.2
Cpa.g.sc130.72 Carica papaya HOM05D007296 ORTHO05D009201 2.8e-13 79.3 76 59.2
Manes.15G152600 Manihot esculenta HOM05D007296 ORTHO05D009201 3.6e-13 79.0 134 35.8
TWI56G0033 Tripterygium wilfordii HOM05D007296 ORTHO05D009201 8.1e-13 77.8 75 53.3
Hma1.2p1_0818F.1_g223340 Hydrangea macrophylla HOM05D007296 ORTHO05D009201 1.8e-12 76.6 79 54.4
Lsat_1_v5_gn_0_6101 Lactuca sativa HOM05D007296 ORTHO05D009201 5.3e-12 75.1 57 64.9
Cc02_g32290 Coffea canephora HOM05D007296 ORTHO05D009201 2.6e-11 72.8 81 48.1
Migut.H00030 Erythranthe guttata HOM05D007296 ORTHO05D009201 5.8e-11 71.6 51 68.6
SGA_v2.0_scaffold18G08254 Striga asiatica HOM05D007296 ORTHO05D009201 5.8e-11 71.6 77 51.9
Gohir.A09G030400 Gossypium hirsutum HOM05D007296 ORTHO05D009201 1.3e-10 70.5 76 47.4
Gohir.D09G030000 Gossypium hirsutum HOM05D007296 ORTHO05D009201 1.3e-10 70.5 76 47.4
SGA_v2.0_scaffold47G17522 Striga asiatica HOM05D000631 ORTHO05D000524 1.3e-10 70.5 52 65.4
Atru.chr6.2441 Acer truncatum HOM05D007296 ORTHO05D009201 1.7e-10 70.1 84 51.2
TAR371G0818 Trochodendron aralioides HOM05D007296 ORTHO05D009201 1.7e-10 70.1 75 52.0
Lsat_1_v5_gn_2_91081 Lactuca sativa HOM05D007296 ORTHO05D009201 2.9e-10 69.3 60 58.3
Potri.001G342100 Populus trichocarpa HOM05D007296 ORTHO05D009201 3.8e-10 68.9 75 53.3
CSS0008661 Camellia sinensis var. sinensis HOM05D007296 ORTHO05D009201 8.4e-10 67.8 62 54.8
CiPaw.04G030100 Carya illinoinensis HOM05D007296 ORTHO05D009201 2.4e-09 66.2 81 50.6
Ciclev10017118m.g Citrus clementina HOM05D007296 ORTHO05D009201 2.4e-09 66.2 81 42.0
CiPaw.03G046500 Carya illinoinensis HOM05D007296 ORTHO05D009201 3.2e-09 65.9 82 48.8
CAN.G473.34 Capsicum annuum HOM05D007296 ORTHO05D009201 4.2e-09 65.5 62 51.6
PGSC0003DMG400012614 Solanum tuberosum HOM05D007296 ORTHO05D009201 4.2e-09 65.5 48 64.6
SalBow1G6940 Salvia bowleyana HOM05D007296 ORTHO05D009201 5.5e-09 65.1 51 64.7
Cfa007330 Carpinus fangiana HOM05D007296 ORTHO05D009201 7.1e-09 64.7 139 33.1
Eucgr.I01721 Eucalyptus grandis HOM05D007296 ORTHO05D009201 7.1e-09 64.7 85 45.9
PGR142G0831 Punica granatum HOM05D007296 ORTHO05D009201 7.1e-09 64.7 58 60.3
Sc16g0004380 Simmondsia chinensis HOM05D007296 ORTHO05D009201 7.1e-09 64.7 50 56.0
Medtr7g033080 Medicago truncatula HOM05D007296 ORTHO05D009201 9.3e-09 64.3 52 59.6
DCAR_021738 Daucus carota HOM05D000631 ORTHO05D000524 1.2e-08 63.9 45 66.7
Dinv33417 Davidia involucrata HOM05D007296 ORTHO05D009201 1.2e-08 63.9 51 60.8
EL10Ac5g12075 Beta vulgaris HOM05D007296 ORTHO05D009201 2.1e-08 63.2 34 82.4
Haze_14767 Corylus avellana HOM05D007296 ORTHO05D009201 2.1e-08 63.2 139 33.1
Thecc.04G021100 Theobroma cacao HOM05D007296 ORTHO05D009201 2.1e-08 63.2 48 56.2
TPR.G1088 Trifolium pratense HOM05D007296 ORTHO05D009201 2.1e-08 63.2 52 59.6
Duzib187G0331 Durio zibethinus HOM05D007296 ORTHO05D009201 3.5e-08 62.4 48 52.1
Psat3g172000 Pisum sativum HOM05D007296 ORTHO05D009201 3.5e-08 62.4 52 59.6
Glyma.19G078800 Glycine max HOM05D007296 ORTHO05D009201 6.0e-08 61.6 54 61.1
PSO017G3033 Papaver somniferum HOM05D007296 ORTHO05D009201 6.0e-08 61.6 70 45.7
DCAR_015066 Daucus carota HOM05D007296 ORTHO05D009201 7.9e-08 61.2 68 51.5
MBI10_g42976_MAGBIO Magnolia biondii HOM05D007296 ORTHO05D009201 7.9e-08 61.2 77 45.5
Aqoxy5G03689 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 1.0e-07 60.8 114 36.8
SGA_v2.0_scaffold135G34923 Striga asiatica HOM05D007296 ORTHO05D009201 1.0e-07 60.8 43 69.8
Glyma.16G068200 Glycine max HOM05D007296 ORTHO05D009201 1.3e-07 60.5 114 37.7
Lj1g0014101 Lotus japonicus HOM05D007296 ORTHO05D009201 1.3e-07 60.5 51 56.9
Phvul.008G151600 Phaseolus vulgaris HOM05D007296 ORTHO05D009201 1.3e-07 60.5 67 50.7
QL02p073829 Quercus lobata HOM05D007296 ORTHO05D009201 1.3e-07 60.5 53 54.7
Lalb_Chr22g0360681 Lupinus albus HOM05D007296 ORTHO05D009201 1.8e-07 60.1 54 57.4
VMungo1383G0878 Vigna mungo HOM05D007296 ORTHO05D009201 1.8e-07 60.1 56 55.4
Ca_06610_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 2.3e-07 59.7 42 64.3
Ca_30727_v3 Cicer arietinum L. HOM05D007296 ORTHO05D009201 2.3e-07 59.7 42 64.3
CiPaw.11G015200 Carya illinoinensis HOM05D007296 ORTHO05D009201 3.0e-07 59.3 50 58.0
FAN09G0682 Fragaria x ananassa HOM05D007296 ORTHO05D009201 3.9e-07 58.9 37 67.6
SalBow7G1031 Salvia bowleyana HOM05D007296 ORTHO05D009201 3.9e-07 58.9 49 63.3
FAN02G1968 Fragaria x ananassa HOM05D007296 ORTHO05D009201 5.1e-07 58.5 37 64.9
FAN05G3275 Fragaria x ananassa HOM05D007296 ORTHO05D009201 5.1e-07 58.5 37 64.9
FvH4_6g51980 Fragaria vesca HOM05D007296 ORTHO05D009201 6.7e-07 58.2 37 64.9
FAN14G0692 Fragaria x ananassa HOM05D007296 ORTHO05D009201 6.7e-07 58.2 37 64.9
Prupe.3G295100 Prunus persica HOM05D007296 ORTHO05D009201 6.7e-07 58.2 50 56.0
Prupe.5G162900 Prunus persica HOM05D007296 ORTHO05D009201 6.7e-07 58.2 83 39.8
unitig_0.g1597 Utricularia gibba HOM05D004929 ORTHO05D006492 6.7e-07 58.2 51 56.9
Nn3g16657 Nelumbo nucifera HOM05D007296 ORTHO05D009201 8.7e-07 57.8 55 50.9
TAR374G0807 Trochodendron aralioides HOM05D007296 ORTHO05D009201 8.7e-07 57.8 79 44.3
ECA246G1504 Erigeron canadensis HOM05D007296 ORTHO05D009201 1.1e-06 57.4 28 89.3
Gorai.006G035000 Gossypium raimondii HOM05D007296 ORTHO05D009201 1.1e-06 57.4 55 50.9
Aqoxy7G03797 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 1.9e-06 56.6 115 36.5
RcHm_v2.0_Chr2g0173451 Rosa chinensis HOM05D007296 ORTHO05D009201 1.9e-06 56.6 44 54.5
Nn4g22550 Nelumbo nucifera HOM05D007296 ORTHO05D009201 2.5e-06 56.2 121 38.8
Aqoxy3G01286 Aquilegia oxysepala HOM05D007296 ORTHO05D009201 3.3e-06 55.8 61 49.2
Ah.12g055220 Amaranthus hybridus HOM05D007296 ORTHO05D009201 5.6e-06 55.1 50 58.0
Sed0024202 Sechium edule HOM05D007296 ORTHO05D009201 9.6e-06 54.3 35 62.9


User provided reference genes

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