Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36978 Brassica carinata HOM05D005656 ORTHO05D007094 1.8e-273 945.3 473 100.0
BcaB08g36975 Brassica carinata HOM05D005656 ORTHO05D007094 6.7e-167 591.3 296 100.0
BcaC04g19049 Brassica carinata HOM05D005656 ORTHO05D007094 4.1e-164 582.0 435 74.0
C09p62910 Brassica napus HOM05D005656 ORTHO05D007094 3.4e-163 578.9 435 73.6
BolC9t59128H Brassica oleracea HOM05D005656 ORTHO05D007094 3.4e-163 578.9 435 73.6
A10p24220 Brassica napus HOM05D005656 ORTHO05D007094 5.9e-163 578.2 509 66.4
BraA10t44487Z Brassica rapa HOM05D005656 ORTHO05D007094 7.2e-161 571.2 509 65.8
BcaB08g36971 Brassica carinata HOM05D005656 ORTHO05D007094 8.8e-159 564.3 434 72.4
Thhalv10013274m.g Eutrema salsugineum HOM05D005656 ORTHO05D007094 1.3e-154 550.4 453 67.8
Sp6g29770 Schrenkiella parvula HOM05D005656 ORTHO05D007094 1.7e-154 550.1 483 65.0
CARHR199080 Cardamine hirsuta HOM05D005656 ORTHO05D007094 1.5e-153 547.0 483 64.2
AL6G24940 Arabidopsis lyrata HOM05D005656 ORTHO05D007094 8.0e-152 541.2 481 64.2
AT5G14260 Arabidopsis thaliana HOM05D005656 ORTHO05D007094 4.0e-151 538.9 511 61.4
Carub.0006s1246 Capsella rubella HOM05D005656 ORTHO05D007094 1.5e-150 537.0 483 63.4
BcaNung03171 Brassica carinata HOM05D005656 ORTHO05D007094 1.3e-146 523.9 460 65.9
Aa31LG11G15050 Aethionema arabicum HOM05D005656 ORTHO05D007094 1.7e-146 523.5 512 59.4
A02p02400 Brassica napus HOM05D005656 ORTHO05D007094 4.0e-143 512.3 400 71.5
Medtr6g023320 Medicago truncatula HOM05D005656 ORTHO05D007094 3.7e-141 505.8 435 63.2
Potri.017G066500 Populus trichocarpa HOM05D005656 ORTHO05D007094 1.8e-140 503.4 457 61.7
CSS0001925 Camellia sinensis var. sinensis HOM05D005656 ORTHO05D007094 4.1e-140 502.3 459 62.1
Cpa.g.sc130.11 Carica papaya HOM05D005656 ORTHO05D007094 5.4e-140 501.9 458 61.4
CSS0043551 Camellia sinensis var. sinensis HOM05D005656 ORTHO05D007094 2.0e-139 500.0 459 61.9
Gohir.D04G079100 Gossypium hirsutum HOM05D005656 ORTHO05D007094 3.5e-139 499.2 485 58.4
Gorai.012G089000 Gossypium raimondii HOM05D005656 ORTHO05D007094 4.5e-139 498.8 485 58.4
COL.COLO4_08768 Corchorus olitorius HOM05D005656 ORTHO05D007094 7.7e-139 498.0 435 64.4
Sabra17G0061100 Salix brachista HOM05D005656 ORTHO05D007094 1.0e-138 497.7 457 61.3
Dinv25681 Davidia involucrata HOM05D005656 ORTHO05D007094 1.7e-138 496.9 453 62.3
Lalb_Chr06g0174321 Lupinus albus HOM05D005656 ORTHO05D007094 1.7e-138 496.9 435 63.4
vmacro05935 Vaccinium macrocarpon HOM05D005656 ORTHO05D007094 1.7e-138 496.9 455 60.9
TWI36G1388 Tripterygium wilfordii HOM05D005656 ORTHO05D007094 2.3e-138 496.5 444 62.6
Psat1g084760 Pisum sativum HOM05D005656 ORTHO05D007094 3.8e-138 495.7 434 62.7
MD09G1015500 Malus domestica HOM05D005656 ORTHO05D007094 6.5e-138 495.0 490 58.8
Manes.15G157800 Manihot esculenta HOM05D005656 ORTHO05D007094 1.9e-137 493.4 487 58.5
Sed0013971 Sechium edule HOM05D005656 ORTHO05D007094 7.2e-137 491.5 459 60.6
MSTRG.24081 Avicennia marina HOM05D005656 ORTHO05D007094 9.5e-137 491.1 444 61.3
Glyma.19G076300 Glycine max HOM05D005656 ORTHO05D007094 1.2e-136 490.7 440 61.8
Sopen02g017160 Solanum pennellii HOM05D005656 ORTHO05D007094 2.8e-136 489.6 457 59.5
Phvul.004G056200 Phaseolus vulgaris HOM05D005656 ORTHO05D007094 3.6e-136 489.2 440 62.5
ClCG05G013280 Citrullus lanatus HOM05D005656 ORTHO05D007094 4.7e-136 488.8 435 62.8
Lalb_Chr02g0157861 Lupinus albus HOM05D005656 ORTHO05D007094 4.7e-136 488.8 455 61.3
Eucgr.I01666 Eucalyptus grandis HOM05D005656 ORTHO05D007094 6.1e-136 488.4 434 62.7
Glyma.05G074800 Glycine max HOM05D005656 ORTHO05D007094 6.1e-136 488.4 441 61.9
Prupe.3G302300 Prunus persica HOM05D005656 ORTHO05D007094 6.1e-136 488.4 492 58.5
PGR142G1770 Punica granatum HOM05D005656 ORTHO05D007094 6.1e-136 488.4 554 53.6
CANSAT64G1678 Cannabis sativa HOM05D005656 ORTHO05D007094 8.0e-136 488.0 434 63.6
CsaV3_3G027250 Cucumis sativus L. HOM05D005656 ORTHO05D007094 1.0e-135 487.6 459 60.1
Lju41A49G67 Lonicera japonica HOM05D005656 ORTHO05D007094 3.0e-135 486.1 444 61.0
Nitab4.5_0000040g0420 Nicotiana tabacum HOM05D005656 ORTHO05D007094 8.9e-135 484.6 455 58.9
TPR.G7527 Trifolium pratense HOM05D005656 ORTHO05D007094 8.9e-135 484.6 434 61.8
CAN.G1780.2 Capsicum annuum HOM05D005656 ORTHO05D007094 1.2e-134 484.2 455 59.3
MELO3C014861.2 Cucumis melo HOM05D005656 ORTHO05D007094 1.2e-134 484.2 435 62.5
Rhsim10G0009000 Rhododendron simsii HOM05D005656 ORTHO05D007094 1.2e-134 484.2 453 60.7
Thecc.04G029600 Theobroma cacao HOM05D005656 ORTHO05D007094 1.2e-134 484.2 434 63.1
GSVIVG01001828001 Vitis vinifera HOM05D005656 ORTHO05D007094 1.2e-134 484.2 429 63.6
Nitab4.5_0002911g0050 Nicotiana tabacum HOM05D005656 ORTHO05D007094 1.5e-134 483.8 455 58.9
Cc07_g00550 Coffea canephora HOM05D005656 ORTHO05D007094 2.0e-134 483.4 442 61.5
SGA_v2.0_scaffold135G34966 Striga asiatica HOM05D005656 ORTHO05D007094 2.0e-134 483.4 430 61.6
RcHm_v2.0_Chr2g0174721 Rosa chinensis HOM05D005656 ORTHO05D007094 2.6e-134 483.0 463 59.2
Duzib264G0552 Durio zibethinus HOM05D005656 ORTHO05D007094 7.5e-134 481.5 499 56.5
Ca_04416_v3 Cicer arietinum L. HOM05D005656 ORTHO05D007094 1.7e-133 480.3 450 60.2
Lj2g0013537 Lotus japonicus HOM05D005656 ORTHO05D007094 1.7e-133 480.3 434 61.5
Ciclev10014955m.g Citrus clementina HOM05D005656 ORTHO05D007094 4.9e-133 478.8 465 58.5
Cfa007258 Carpinus fangiana HOM05D005656 ORTHO05D007094 8.3e-133 478.0 436 62.4
TAR371G0943 Trochodendron aralioides HOM05D005656 ORTHO05D007094 1.4e-132 477.2 452 61.7
Aqoxy5G03503 Aquilegia oxysepala HOM05D005656 ORTHO05D007094 2.4e-132 476.5 487 56.7
CiPaw.03G052000 Carya illinoinensis HOM05D005656 ORTHO05D007094 2.4e-132 476.5 429 62.2
Gorai.007G073800 Gossypium raimondii HOM05D005656 ORTHO05D007094 3.1e-132 476.1 448 61.4
Peaxi162Scf00080g00211 Petunia axillaris HOM05D005656 ORTHO05D007094 3.1e-132 476.1 435 61.1
ECA232G3800 Erigeron canadensis HOM05D005656 ORTHO05D007094 5.4e-132 475.3 434 60.6
PGSC0003DMG400006974 Solanum tuberosum HOM05D005656 ORTHO05D007094 5.4e-132 475.3 466 57.7
PSO063G4854 Papaver somniferum HOM05D005656 ORTHO05D007094 1.6e-131 473.8 500 56.2
Sed0022605 Sechium edule HOM05D005656 ORTHO05D007094 1.6e-131 473.8 459 58.6
Gohir.D11G069000 Gossypium hirsutum HOM05D005656 ORTHO05D007094 2.7e-131 473.0 448 61.2
arahy.Tifrunner.gnm1.ann1.39JT4A Arachis hypogaea HOM05D005656 ORTHO05D007094 4.5e-131 472.2 416 63.9
FvH4_6g52980 Fragaria vesca HOM05D005656 ORTHO05D007094 1.3e-130 470.7 485 57.3
HanXRQChr09g0256021 Helianthus annuus HOM05D005656 ORTHO05D007094 2.3e-130 469.9 448 59.6
Actinidia05925 Actinidia chinensis HOM05D005656 ORTHO05D007094 3.8e-130 469.2 442 61.1
arahy.Tifrunner.gnm1.ann1.2KKI49 Arachis hypogaea HOM05D005656 ORTHO05D007094 5.0e-130 468.8 440 60.9
PSO782G5211 Papaver somniferum HOM05D005656 ORTHO05D007094 1.1e-129 467.6 500 56.2
Ah.04g163580 Amaranthus hybridus HOM05D005656 ORTHO05D007094 1.2e-128 464.2 509 55.0
C02p06650 Brassica napus HOM05D005656 ORTHO05D007094 1.6e-128 463.8 459 61.4
BolC2t06607H Brassica oleracea HOM05D005656 ORTHO05D005446 3.6e-128 462.6 470 60.9
ATR0824G269 Amborella trichopoda HOM05D005656 ORTHO05D007094 1.0e-127 461.1 434 59.4
FAN02G0407 Fragaria x ananassa HOM05D005656 ORTHO05D007094 1.8e-127 460.3 485 56.7
DCAR_002954 Daucus carota HOM05D005656 ORTHO05D007094 3.0e-127 459.5 485 54.6
BcaC03g13504 Brassica carinata HOM05D005656 ORTHO05D007094 5.2e-127 458.8 497 59.4
Lsat_1_v5_gn_4_185500 Lactuca sativa HOM05D005656 ORTHO05D007094 2.0e-126 456.8 435 60.7
Oeu013956.6 Olea europaea HOM05D005656 ORTHO05D007094 5.8e-126 455.3 482 56.4
AUR62041797 Chenopodium quinoa HOM05D005656 ORTHO05D007094 2.9e-125 453.0 449 58.1
CDE09G0728 Ceratophyllum demersum HOM05D005656 ORTHO05D007094 3.2e-124 449.5 446 57.6
Hund06758 Selenicereus undatus HOM05D005656 ORTHO05D007094 7.0e-124 448.4 523 51.4
Haze_14830 Corylus avellana HOM05D005656 ORTHO05D007094 9.2e-124 448.0 452 58.6
Nn3g16535 Nelumbo nucifera HOM05D005656 ORTHO05D007094 6.0e-123 445.3 454 56.4
HPP92_024278 Vanilla planifolia HOM05D005656 ORTHO05D007094 1.5e-121 440.7 451 57.0
Os12g0236900 Oryza sativa ssp. japonica HOM05D005656 ORTHO05D007094 3.7e-117 426.0 433 56.4
Gohir.A05G340800 Gossypium hirsutum HOM05D005656 ORTHO05D007094 6.0e-115 418.7 349 65.0
TAR374G1035 Trochodendron aralioides HOM05D005656 ORTHO05D007094 3.3e-113 412.9 394 61.2
TAR629G1348 Trochodendron aralioides HOM05D005656 ORTHO05D007094 6.8e-111 405.2 386 60.6
AagrBONN_evm.TU.Sc2ySwM_117.3449 Anthoceros agrestis HOM05D005656 ORTHO05D007094 2.9e-109 399.8 435 54.9
Zm00001eb158830 Zea mays HOM05D005656 ORTHO05D007094 1.3e-106 391.0 433 53.6
Mapoly0008s0037 Marchantia polymorpha HOM05D005656 ORTHO05D007094 1.7e-106 390.6 465 50.8
Zm00001eb359140 Zea mays HOM05D005656 ORTHO05D007094 1.8e-103 380.6 433 53.1
Pp3c10_18400 Physcomitrium patens HOM05D005656 ORTHO05D007094 4.0e-103 379.4 448 52.5
FAN14G1288 Fragaria x ananassa HOM05D005656 ORTHO05D007094 4.4e-102 375.9 483 49.9
SMO164G0150 Selaginella moellendorffii HOM05D005656 ORTHO05D007094 2.2e-101 373.6 442 52.3
SEGI_04738 Sequoiadendron giganteum HOM05D005656 ORTHO05D007094 1.4e-100 370.9 349 57.3
Dinv33371 Davidia involucrata HOM05D005656 ORTHO05D007094 9.2e-100 368.2 414 53.6
Pp3c3_30340 Physcomitrium patens HOM05D005656 ORTHO05D007094 3.5e-99 366.3 447 50.8
QL02p072623 Quercus lobata HOM05D005656 ORTHO05D007094 1.3e-98 364.4 362 59.7
Atru.chr6.2507 Acer truncatum HOM05D005656 ORTHO05D007094 6.6e-98 362.1 367 57.8
BraA02t05211Z Brassica rapa HOM05D005656 ORTHO05D007094 4.3e-97 359.4 247 76.9
CBR_g368 Chara braunii HOM05D005656 ORTHO05D007094 8.1e-96 355.1 435 50.1
Solyc02g068050.4 Solanum lycopersicum HOM05D005656 ORTHO05D007094 8.1e-96 355.1 366 57.1
CDE02G1600 Ceratophyllum demersum HOM05D005656 ORTHO05D007094 1.4e-95 354.4 394 54.3
MD17G1015800 Malus domestica HOM05D005656 ORTHO05D007094 1.4e-95 354.4 405 54.3
Sc03g0006840 Simmondsia chinensis HOM05D005656 ORTHO05D007094 6.0e-91 339.0 359 54.6
Actinidia36179 Actinidia chinensis HOM05D005656 ORTHO05D007094 1.3e-88 331.3 289 64.4
Gohir.A11G064700 Gossypium hirsutum HOM05D005656 ORTHO05D007094 2.8e-88 330.1 354 56.8
AUR62041264 Chenopodium quinoa HOM05D005656 ORTHO05D007094 7.4e-81 305.4 271 62.0
FAN09G1896 Fragaria x ananassa HOM05D005656 ORTHO05D007094 1.0e-45 188.7 238 47.9
PRCOL_00004951 Prasinoderma coloniale HOM05D005656 ORTHO05D007094 3.8e-45 186.8 381 37.3
TAR362G0771 Trochodendron aralioides HOM05D005656 ORTHO05D007094 1.7e-37 161.4 135 63.7
TAR362G1284 Trochodendron aralioides HOM05D005656 ORTHO05D007094 6.5e-37 159.5 137 62.0
AUR62041263 Chenopodium quinoa HOM05D005656 ORTHO05D007094 1.2e-30 138.7 102 72.5
TAR623G0925 Trochodendron aralioides HOM05D005656 ORTHO05D007094 7.2e-20 102.8 98 61.2
BolC9t59026H Brassica oleracea HOM05D005656 ORTHO05D007094 6.1e-19 99.8 96 64.6
Hma1.2p1_0146F.1_g065760 Hydrangea macrophylla HOM05D005656 ORTHO05D007094 1.4e-18 98.6 57 80.7
Mapoly0016s0035 Marchantia polymorpha HOM05D005656 ORTHO05D006437 2.3e-13 81.3 171 35.7
AagrBONN_evm.TU.Sc2ySwM_117.735 Anthoceros agrestis HOM05D004224 ORTHO05D006437 4.3e-12 77.0 275 31.3
Pp3c22_6390 Physcomitrium patens HOM05D004224 ORTHO05D006437 2.1e-11 74.7 330 26.1
SMO351G0583 Selaginella moellendorffii HOM05D005656 ORTHO05D007094 4.4e-09 67.0 166 33.7
TAR231G0004 Trochodendron aralioides HOM05D005656 ORTHO05D007094 7.0e-07 59.7 165 32.1


User provided reference genes

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