Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36945 Brassica carinata HOM05D003833 ORTHO05D004209 4.0e-143 511.5 277 100.0
A10p23880 Brassica napus HOM05D003833 ORTHO05D004209 4.8e-141 504.6 277 98.2
BcaC04g19007 Brassica carinata HOM05D003833 ORTHO05D004209 8.3e-141 503.8 277 97.8
Thhalv10014353m.g Eutrema salsugineum HOM05D003833 ORTHO05D004209 1.1e-140 503.4 277 97.8
BolC9t59073H Brassica oleracea HOM05D003833 ORTHO05D004209 1.8e-140 502.7 277 97.8
C09p62360 Brassica napus HOM05D003833 ORTHO05D004209 4.1e-140 501.5 277 97.5
BraA10t44452Z Brassica rapa HOM05D003833 ORTHO05D004209 4.1e-140 501.5 277 97.8
Sp6g29240 Schrenkiella parvula HOM05D003833 ORTHO05D004209 1.2e-139 500.0 277 97.1
Carub.0006s1298 Capsella rubella HOM05D003833 ORTHO05D004209 4.7e-136 488.0 277 93.9
CARHR198510 Cardamine hirsuta HOM05D003833 ORTHO05D004209 6.1e-136 487.6 277 93.9
AL6G25600 Arabidopsis lyrata HOM05D003833 ORTHO05D004209 6.8e-135 484.2 277 93.5
AT5G14800 Arabidopsis thaliana HOM05D003833 ORTHO05D004209 2.6e-134 482.3 277 93.1
A03p06820 Brassica napus HOM05D003833 ORTHO05D004209 3.3e-129 465.3 277 89.9
BcaB01g05096 Brassica carinata HOM05D003833 ORTHO05D004209 2.1e-128 462.6 277 89.9
C03p07820 Brassica napus HOM05D003833 ORTHO05D004209 2.1e-128 462.6 277 89.9
BolC3t13281H Brassica oleracea HOM05D003833 ORTHO05D004209 2.1e-128 462.6 277 89.9
BraA03t10007Z Brassica rapa HOM05D003833 ORTHO05D004209 3.0e-127 458.8 281 88.6
Aa31LG11G14650 Aethionema arabicum HOM05D003833 ORTHO05D004209 2.4e-124 449.1 319 79.6
THA.LOC104816595 Tarenaya hassleriana HOM05D003833 ORTHO05D004209 2.0e-115 419.5 279 81.0
QL07p007726 Quercus lobata HOM05D003833 ORTHO05D004209 1.3e-114 416.8 276 79.3
Manes.09G008001 Manihot esculenta HOM05D003833 ORTHO05D004209 2.8e-112 409.1 277 77.6
Thecc.05G140900 Theobroma cacao HOM05D003833 ORTHO05D004209 1.4e-111 406.8 277 76.9
ClCG04G004210 Citrullus lanatus HOM05D003833 ORTHO05D004209 4.0e-111 405.2 274 77.0
Prupe.7G045500 Prunus persica HOM05D003833 ORTHO05D004209 5.2e-111 404.8 276 76.4
CANSAT64G1401 Cannabis sativa HOM05D003833 ORTHO05D004209 6.8e-111 404.4 274 77.7
Phvul.001G124300 Phaseolus vulgaris HOM05D003833 ORTHO05D004209 1.2e-110 403.7 274 76.3
Cpa.g.sc49.96 Carica papaya HOM05D003833 ORTHO05D004209 2.0e-110 402.9 277 76.9
Ciclev10005607m.g Citrus clementina HOM05D003833 ORTHO05D004209 2.0e-110 402.9 274 77.4
Haze_19732 Corylus avellana HOM05D003833 ORTHO05D004209 2.0e-110 402.9 277 76.2
Potri.006G042600 Populus trichocarpa HOM05D003833 ORTHO05D004209 2.0e-110 402.9 274 77.7
Lj1g0026826 Lotus japonicus HOM05D003833 ORTHO05D004209 2.6e-110 402.5 274 77.0
VMungo1383G2371 Vigna mungo HOM05D003833 ORTHO05D004209 2.6e-110 402.5 274 75.9
TWI53G1459 Tripterygium wilfordii HOM05D003833 ORTHO05D004209 3.4e-110 402.1 274 76.3
COL.COLO4_33945 Corchorus olitorius HOM05D003833 ORTHO05D004209 5.8e-110 401.4 277 77.3
CsaV3_4G027860 Cucumis sativus L. HOM05D003833 ORTHO05D004209 7.5e-110 401.0 274 77.0
Gohir.A07G024700 Gossypium hirsutum HOM05D003833 ORTHO05D004209 7.5e-110 401.0 277 75.5
Sed0017232 Sechium edule HOM05D003833 ORTHO05D004209 7.5e-110 401.0 274 76.3
MELO3C019039.2 Cucumis melo HOM05D003833 ORTHO05D004209 1.3e-109 400.2 274 76.3
Duzib093G1609 Durio zibethinus HOM05D003833 ORTHO05D004209 1.3e-109 400.2 276 76.1
Glyma.19G131500 Glycine max HOM05D003833 ORTHO05D004209 1.3e-109 400.2 274 75.5
TPR.G9312 Trifolium pratense HOM05D003833 ORTHO05D004209 1.3e-109 400.2 274 75.2
FvH4_6g25150 Fragaria vesca HOM05D003833 ORTHO05D004209 1.7e-109 399.8 277 75.5
Cfa016709 Carpinus fangiana HOM05D003833 ORTHO05D004209 2.2e-109 399.4 277 75.1
FAN05G1327 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.2e-109 399.4 277 75.5
FAN05G4135 Fragaria x ananassa HOM05D003833 ORTHO05D004209 2.2e-109 399.4 277 75.5
Sed0027268 Sechium edule HOM05D003833 ORTHO05D004209 2.2e-109 399.4 273 76.2
RcHm_v2.0_Chr1g0334171 Rosa chinensis HOM05D003833 ORTHO05D004209 4.9e-109 398.3 277 75.5
MD12G1094200 Malus domestica HOM05D003833 ORTHO05D004209 6.4e-109 397.9 277 75.1
PGR142G2709 Punica granatum HOM05D003833 ORTHO05D004209 6.4e-109 397.9 277 75.8
Sabra06G0028900 Salix brachista HOM05D003833 ORTHO05D004209 1.4e-108 396.7 274 76.6
Glyma.03G129100 Glycine max HOM05D003833 ORTHO05D004209 2.4e-108 396.0 274 74.8
Atru.chr1.1464 Acer truncatum HOM05D003833 ORTHO05D004209 3.2e-108 395.6 277 75.1
PGR042G2932 Punica granatum HOM05D003833 ORTHO05D004209 4.1e-108 395.2 277 75.5
FAN02G2058 Fragaria x ananassa HOM05D003833 ORTHO05D004209 5.4e-108 394.8 277 74.7
Atru.chr1.1452 Acer truncatum HOM05D003833 ORTHO05D004209 7.1e-108 394.4 277 75.1
Gorai.001G029600 Gossypium raimondii HOM05D003833 ORTHO05D004209 1.2e-107 393.7 277 74.0
CiPaw.09G044700 Carya illinoinensis HOM05D003833 ORTHO05D004209 2.1e-107 392.9 277 75.5
Gohir.D07G028300 Gossypium hirsutum HOM05D003833 ORTHO05D004209 2.7e-107 392.5 277 73.6
MD14G1084400 Malus domestica HOM05D003833 ORTHO05D004209 2.7e-107 392.5 277 74.0
Aqoxy2G03781 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 6.0e-107 391.3 272 75.7
arahy.Tifrunner.gnm1.ann1.C9KHWR Arachis hypogaea HOM05D003833 ORTHO05D004209 7.8e-107 391.0 274 74.5
Lalb_Chr14g0365931 Lupinus albus HOM05D003833 ORTHO05D004209 1.3e-106 390.2 274 75.5
Aqoxy2G00325 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 1.7e-106 389.8 272 75.0
Ca_08401_v3 Cicer arietinum L. HOM05D003833 ORTHO05D004209 3.0e-106 389.0 274 74.5
FAN14G1808 Fragaria x ananassa HOM05D003833 ORTHO05D004209 3.0e-106 389.0 288 72.6
EL10Ac3g07192 Beta vulgaris HOM05D003833 ORTHO05D004209 1.5e-105 386.7 277 73.3
Psat3g078000 Pisum sativum HOM05D003833 ORTHO05D004209 1.9e-105 386.3 274 74.1
DCAR_020545 Daucus carota HOM05D003833 ORTHO05D004209 2.5e-105 386.0 274 74.5
Lj1A1105T22 Lonicera japonica HOM05D003833 ORTHO05D004209 2.5e-105 386.0 274 74.8
Medtr7g090160 Medicago truncatula HOM05D003833 ORTHO05D004209 4.3e-105 385.2 274 72.3
CSS0041120 Camellia sinensis var. sinensis HOM05D003833 ORTHO05D004209 1.6e-104 383.3 271 74.5
BolC3t20513H Brassica oleracea HOM05D003833 ORTHO05D004209 2.1e-104 382.9 255 82.4
Lsat_1_v5_gn_4_129320 Lactuca sativa HOM05D003833 ORTHO05D004209 2.1e-104 382.9 273 75.1
Dinv08489 Davidia involucrata HOM05D003833 ORTHO05D004209 4.7e-104 381.7 274 73.7
MSTRG.15651 Avicennia marina HOM05D003833 ORTHO05D004209 6.2e-104 381.3 274 73.4
ECA232G1919 Erigeron canadensis HOM05D003833 ORTHO05D004209 6.2e-104 381.3 273 76.2
PGSC0003DMG400010441 Solanum tuberosum HOM05D003833 ORTHO05D004209 1.1e-103 380.6 270 73.7
AUR62030362 Chenopodium quinoa HOM05D003833 ORTHO05D004209 1.4e-103 380.2 277 72.6
PSO210G1377 Papaver somniferum HOM05D003833 ORTHO05D004209 2.3e-103 379.4 277 71.8
Ah.04g151120 Amaranthus hybridus HOM05D003833 ORTHO05D004209 3.1e-103 379.0 278 72.3
MSTRG.10798 Avicennia marina HOM05D003833 ORTHO05D004209 4.0e-103 378.6 274 73.4
PSO832G0079 Papaver somniferum HOM05D003833 ORTHO05D004209 5.2e-103 378.3 277 71.8
Lj2A394G34 Lonicera japonica HOM05D003833 ORTHO05D004209 6.8e-103 377.9 273 74.0
Solyc02g068640.3 Solanum lycopersicum HOM05D003833 ORTHO05D004209 6.8e-103 377.9 273 73.3
Sopen02g017810 Solanum pennellii HOM05D003833 ORTHO05D004209 6.8e-103 377.9 273 73.3
arahy.Tifrunner.gnm1.ann1.LP5CTB Arachis hypogaea HOM05D003833 ORTHO05D004209 1.2e-102 377.1 304 67.8
Actinidia39173 Actinidia chinensis HOM05D003833 ORTHO05D004209 2.0e-102 376.3 270 71.9
HanXRQChr09g0266491 Helianthus annuus HOM05D003833 ORTHO05D004209 2.0e-102 376.3 273 73.6
Sc13g0001320 Simmondsia chinensis HOM05D003833 ORTHO05D004209 2.6e-102 375.9 273 73.6
SGA_v2.0_scaffold94G28522 Striga asiatica HOM05D003833 ORTHO05D004209 4.4e-102 375.2 271 73.4
Migut.K00123 Erythranthe guttata HOM05D003833 ORTHO05D004209 5.8e-102 374.8 274 71.9
TAR623G1635 Trochodendron aralioides HOM05D003833 ORTHO05D004209 5.8e-102 374.8 273 71.8
Peaxi162Scf00149g00116 Petunia axillaris HOM05D003833 ORTHO05D004209 9.9e-102 374.0 284 71.8
GSVIVG01033588001 Vitis vinifera HOM05D003833 ORTHO05D004209 2.9e-101 372.5 273 72.2
BolC4t23181H Brassica oleracea HOM05D003833 ORTHO05D004209 1.1e-100 370.5 255 81.2
Oeu029492.1 Olea europaea HOM05D003833 ORTHO05D004209 1.1e-100 370.5 281 69.8
C03p82420 Brassica napus HOM05D003833 ORTHO05D004209 3.2e-100 369.0 282 74.1
Dinv34388 Davidia involucrata HOM05D003833 ORTHO05D004209 4.1e-100 368.6 293 68.3
C03p82400 Brassica napus HOM05D003833 ORTHO05D004209 5.4e-100 368.2 282 74.5
Sc13g0001340 Simmondsia chinensis HOM05D003833 ORTHO05D004209 5.4e-100 368.2 273 72.9
PSO782G0909 Papaver somniferum HOM05D003833 ORTHO05D004209 2.1e-99 366.3 275 69.5
BcaC02g10661 Brassica carinata HOM05D003833 ORTHO05D004209 3.5e-99 365.5 258 80.2
BolC4t24169H Brassica oleracea HOM05D003833 ORTHO05D004209 6.0e-99 364.8 259 80.3
Hund24632 Selenicereus undatus HOM05D003833 ORTHO05D004209 6.6e-98 361.3 277 68.6
BcaC06g33558 Brassica carinata HOM05D003833 ORTHO05D004209 8.6e-98 360.9 282 73.8
AUR62040845 Chenopodium quinoa HOM05D003833 ORTHO05D004209 2.5e-97 359.4 277 70.8
Ah.13g077020 Amaranthus hybridus HOM05D003833 ORTHO05D004209 3.3e-97 359.0 291 67.0
BcaC02g11392 Brassica carinata HOM05D003833 ORTHO05D004209 3.3e-97 359.0 282 73.8
C04p16080 Brassica napus HOM05D003833 ORTHO05D004209 2.8e-96 355.9 282 73.4
CDE02G3693 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 5.2e-95 351.7 272 68.8
CDE09G0749 Ceratophyllum demersum HOM05D003833 ORTHO05D004209 1.5e-94 350.1 272 68.0
Nitab4.5_0003379g0050 Nicotiana tabacum HOM05D003833 ORTHO05D004209 1.5e-94 350.1 336 60.1
SHI05043 Sapria himalayana HOM05D003833 ORTHO05D004209 2.0e-94 349.7 269 70.3
MBI13_g29520_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 1.3e-93 347.1 270 68.1
Os01g0948400 Oryza sativa ssp. japonica HOM05D003833 ORTHO05D004209 6.4e-93 344.7 271 66.8
Nn7g36480 Nelumbo nucifera HOM05D003833 ORTHO05D004209 7.1e-92 341.3 273 68.1
Nitab4.5_0006282g0020 Nicotiana tabacum HOM05D003833 ORTHO05D004209 2.1e-91 339.7 323 61.0
HPP92_001015 Vanilla planifolia HOM05D003833 ORTHO05D004209 6.0e-91 338.2 268 66.0
vmacro07822 Vaccinium macrocarpon HOM05D003833 ORTHO05D004209 2.5e-89 332.8 368 53.5
ATR0721G010 Amborella trichopoda HOM05D003833 ORTHO05D004209 1.6e-88 330.1 272 65.4
BolC6t37672H Brassica oleracea HOM05D003833 ORTHO05D004209 1.6e-88 330.1 226 81.4
unitig_26.g8850 Utricularia gibba HOM05D003833 ORTHO05D004209 5.3e-87 325.1 251 68.5
SEGI_35199 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 1.3e-85 320.5 266 63.5
Cc06_g18620 Coffea canephora HOM05D003833 ORTHO05D004209 3.8e-85 318.9 257 66.1
C04p26360 Brassica napus HOM05D003833 ORTHO05D004209 6.4e-85 318.2 256 72.3
C06p25140 Brassica napus HOM05D003833 ORTHO05D004209 3.2e-84 315.8 281 67.6
Prupe.7G045400 Prunus persica HOM05D003833 ORTHO05D004209 7.9e-83 311.2 271 58.7
MD12G1091800 Malus domestica HOM05D003833 ORTHO05D004209 5.1e-82 308.5 275 57.8
Eucgr.K01625 Eucalyptus grandis HOM05D003833 ORTHO05D004209 4.3e-81 305.4 211 75.4
Zm00001eb141220 Zea mays HOM05D003833 ORTHO05D004209 3.6e-80 302.4 269 60.2
Mapoly0029s0092 Marchantia polymorpha HOM05D003833 ORTHO05D004209 4.5e-78 295.4 267 59.2
SMO337G0103 Selaginella moellendorffii HOM05D003833 ORTHO05D004209 8.4e-77 291.2 264 58.7
Rhsim03G0034800 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.2e-75 287.3 486 41.6
RhsimUnG0217200 Rhododendron simsii HOM05D003833 ORTHO05D004209 3.5e-75 285.8 486 41.4
AagrBONN_evm.TU.Sc2ySwM_368.156 Anthoceros agrestis HOM05D003833 ORTHO05D004209 6.0e-75 285.0 264 56.4
Pp3c10_15650 Physcomitrium patens HOM05D003833 ORTHO05D004209 7.9e-75 284.6 267 57.7
AagrBONN_evm.TU.Sc2ySwM_368.1806 Anthoceros agrestis HOM05D003833 ORTHO05D004209 5.1e-74 282.0 264 56.4
BcaC02g10122 Brassica carinata HOM05D003833 ORTHO05D004209 1.1e-71 274.2 252 64.3
CBR_g16006 Chara braunii HOM05D003833 ORTHO05D004209 1.8e-71 273.5 279 53.8
BcaC08g44899 Brassica carinata HOM05D003833 ORTHO05D004209 2.2e-69 266.5 267 61.4
Cre03.g154550 Chlamydomonas reinhardtii HOM05D003833 ORTHO05D004209 2.1e-67 260.0 276 52.2
Duzib056G0002 Durio zibethinus HOM05D003833 ORTHO05D004209 4.6e-67 258.8 258 59.7
Dinv03868 Davidia involucrata HOM05D003833 ORTHO05D004209 2.8e-64 249.6 205 68.3
FAN10G2875 Fragaria x ananassa HOM05D005759 ORTHO05D007172 4.5e-62 242.3 300 52.3
MCO05G631 Micromonas commoda HOM05D003833 ORTHO05D004209 5.5e-60 235.3 267 52.1
BolC3t20511H Brassica oleracea HOM05D003833 ORTHO05D004209 1.0e-58 231.1 131 93.1
RcHm_v2.0_Chr2g0125021 Rosa chinensis HOM05D003833 ORTHO05D004209 5.3e-55 218.8 140 79.3
Rhsim13G0081800 Rhododendron simsii HOM05D003833 ORTHO05D004209 1.5e-49 200.7 272 47.1
SEGI_40635 Sequoiadendron giganteum HOM05D003833 ORTHO05D004209 7.9e-43 178.3 131 73.3
MCO04G012 Micromonas commoda HOM05D003833 ORTHO05D004209 3.9e-42 176.0 415 34.9
Eucgr.K01616 Eucalyptus grandis HOM05D003833 ORTHO05D004209 8.8e-42 174.9 136 69.9
MBI03_g45406_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 3.3e-41 172.9 148 65.5
MD12G1094100 Malus domestica HOM05D003833 ORTHO05D004209 2.2e-40 170.2 138 62.3
FAN06G3481 Fragaria x ananassa HOM05D003833 ORTHO05D004209 1.2e-38 164.5 164 60.4
PRCOL_00005946 Prasinoderma coloniale HOM05D003833 ORTHO05D004209 8.5e-37 158.3 216 46.3
MBI03_g17131_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 5.5e-36 155.6 130 66.9
TAR623G0480 Trochodendron aralioides HOM05D003833 ORTHO05D004209 7.2e-36 155.2 96 82.3
MBI09_g02151_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.7e-35 153.3 121 70.2
BolC4t24812H Brassica oleracea HOM05D003833 ORTHO05D004209 1.5e-28 131.0 95 75.8
Nn1g08168 Nelumbo nucifera HOM05D003833 ORTHO05D004209 4.7e-27 125.9 143 51.0
Haze_26946 Corylus avellana HOM05D003833 ORTHO05D004209 3.0e-26 123.2 257 33.5
Medtr1046s0010 Medicago truncatula HOM05D003833 ORTHO05D004209 3.4e-25 119.8 264 32.2
BcaNung06051 Brassica carinata HOM05D003833 ORTHO05D004209 1.1e-23 114.8 111 62.2
Haze_27356 Corylus avellana HOM05D003833 ORTHO05D004209 1.1e-23 114.8 293 29.4
RcHm_v2.0_Chr2g0125031 Rosa chinensis HOM05D003833 ORTHO05D004209 1.2e-22 111.3 139 46.8
FvH4_7g06311 Fragaria vesca HOM05D003833 ORTHO05D004209 2.2e-21 107.1 73 79.5
Aqoxy3G03819 Aquilegia oxysepala HOM05D003833 ORTHO05D004209 2.8e-19 100.1 150 44.7
BcaC02g08088 Brassica carinata HOM05D003833 ORTHO05D004209 3.4e-17 93.2 52 92.3
C04p17110 Brassica napus HOM05D003833 ORTHO05D004209 4.4e-17 92.8 52 90.4
BolC4t23262H Brassica oleracea HOM05D003833 ORTHO05D004209 4.4e-17 92.8 52 90.4
Gohir.D06G163101 Gossypium hirsutum HOM05D002585 ORTHO05D002917 7.5e-17 92.0 72 61.1
Gorai.011G171800 Gossypium raimondii HOM05D002585 ORTHO05D002917 7.5e-17 92.0 72 61.1
BolC8t47752H Brassica oleracea HOM05D003833 ORTHO05D004209 9.8e-17 91.7 52 90.4
CBR_g37250 Chara braunii HOM05D003833 ORTHO05D004209 1.7e-16 90.9 69 68.1
Oeu050503.1 Olea europaea HOM05D003833 ORTHO05D004209 3.7e-16 89.7 71 64.8
BcaC02g11310 Brassica carinata HOM05D003833 ORTHO05D004209 4.9e-16 89.4 52 88.5
MD12G1091600 Malus domestica HOM05D003833 ORTHO05D004209 4.9e-16 89.4 68 64.7
Gohir.D13G165733 Gossypium hirsutum HOM05D002585 ORTHO05D002917 8.3e-16 88.6 72 58.3
Gorai.008G052500 Gossypium raimondii HOM05D002585 ORTHO05D002917 1.1e-15 88.2 72 59.7
C08p09060 Brassica napus HOM05D003833 ORTHO05D004209 1.8e-15 87.4 50 88.0
MBI10_g20272_MAGBIO Magnolia biondii HOM05D003833 ORTHO05D004209 2.4e-15 87.0 59 76.3
FvH4_7g06312 Fragaria vesca HOM05D003833 ORTHO05D004209 5.9e-14 82.4 53 77.4
SGA_v2.0_scaffold44G16671 Striga asiatica HOM05D003833 ORTHO05D004209 1.3e-08 64.7 64 56.2
SalBow6G3161 Salvia bowleyana HOM05D021775 ORTHO05D004209 1.4e-07 61.2 40 77.5
Gohir.D03G082900 Gossypium hirsutum HOM05D002585 ORTHO05D002917 3.2e-07 60.1 52 55.8


User provided reference genes

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