Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36904 Brassica carinata HOM05D004818 ORTHO05D005444 3.6e-21 104.0 52 100.0
A10p23550 Brassica napus HOM05D004818 ORTHO05D005444 2.6e-19 97.8 52 94.2
BraA10t44421Z Brassica rapa HOM05D004818 ORTHO05D005444 2.6e-19 97.8 52 94.2
BcaB08g36903 Brassica carinata HOM05D004818 ORTHO05D005444 4.8e-18 93.6 48 97.9
BcaC04g18956 Brassica carinata HOM05D004818 ORTHO05D005444 4.8e-18 93.6 48 97.9
C09p61780 Brassica napus HOM05D004818 ORTHO05D005444 4.8e-18 93.6 48 97.9
BolC9t59016H Brassica oleracea HOM05D004818 ORTHO05D005444 4.8e-18 93.6 48 97.9
CARHR197990 Cardamine hirsuta HOM05D004818 ORTHO05D005444 3.1e-17 90.9 52 88.5
A03p07110 Brassica napus HOM05D004818 ORTHO05D005444 1.2e-16 89.0 53 88.7
BraA03t10033Z Brassica rapa HOM05D004818 ORTHO05D005444 1.2e-16 89.0 53 88.7
C03p08100 Brassica napus HOM05D004818 ORTHO05D005444 2.0e-16 88.2 53 86.8
BolC3t13307H Brassica oleracea HOM05D004818 ORTHO05D005444 2.0e-16 88.2 53 86.8
Sp6g28750 Schrenkiella parvula HOM05D004818 ORTHO05D005444 2.5e-14 81.3 54 85.2
Thhalv10015231m.g Eutrema salsugineum HOM05D004818 ORTHO05D005444 5.5e-14 80.1 54 83.3
AT5G15320 Arabidopsis thaliana HOM05D004818 ORTHO05D005444 9.4e-14 79.3 54 79.6
Carub.0006s1351 Capsella rubella HOM05D004818 ORTHO05D005444 9.4e-14 79.3 54 79.6
AL6G26200 Arabidopsis lyrata HOM05D004818 ORTHO05D005444 1.0e-12 75.9 54 75.9
Aa31LG5G12500 Aethionema arabicum HOM05D004818 ORTHO05D005444 5.2e-12 73.6 54 74.1
A03p32690 Brassica napus HOM05D004818 ORTHO05D005444 6.8e-12 73.2 54 72.2
A05p44830 Brassica napus HOM05D004818 ORTHO05D005444 6.8e-12 73.2 54 72.2
C03p39790 Brassica napus HOM05D004818 ORTHO05D005444 6.8e-12 73.2 54 72.2
BolC3t16243H Brassica oleracea HOM05D004818 ORTHO05D005444 6.8e-12 73.2 54 72.2
BcaC05g30492 Brassica carinata HOM05D004818 ORTHO05D005444 2.0e-11 71.6 54 70.4
MELO3C013404.2 Cucumis melo HOM05D004818 ORTHO05D005444 2.0e-11 71.6 54 74.1
CsaV3_7G000550 Cucumis sativus L. HOM05D004818 ORTHO05D005444 2.0e-11 71.6 54 74.1
Manes.18G015600 Manihot esculenta HOM05D004818 ORTHO05D005444 2.0e-11 71.6 54 75.9
Sed0018748 Sechium edule HOM05D004818 ORTHO05D005444 2.0e-11 71.6 54 74.1
AL3G11130 Arabidopsis lyrata HOM05D004818 ORTHO05D005444 2.6e-11 71.2 54 70.4
Carub.0003s0104 Capsella rubella HOM05D004818 ORTHO05D005444 2.6e-11 71.2 54 70.4
Zm00001eb078460 Zea mays HOM05D004818 ORTHO05D005444 2.6e-11 71.2 52 69.2
Potri.005G236500 Populus trichocarpa HOM05D004818 ORTHO05D005444 4.4e-11 70.5 54 72.2
BraA03t12437Z Brassica rapa HOM05D004818 ORTHO05D005444 5.7e-11 70.1 54 70.4
BcaC05g30384 Brassica carinata HOM05D004818 ORTHO05D005444 7.5e-11 69.7 54 68.5
CiPaw.05G074500 Carya illinoinensis HOM05D004818 ORTHO05D005444 7.5e-11 69.7 55 70.9
Sp3g00990 Schrenkiella parvula HOM05D004818 ORTHO05D005444 7.5e-11 69.7 54 68.5
C09p75420 Brassica napus HOM05D004818 ORTHO05D005444 9.8e-11 69.3 58 65.5
Thecc.02G073200 Theobroma cacao HOM05D004818 ORTHO05D005444 9.8e-11 69.3 54 72.2
Zm00001eb425810 Zea mays HOM05D004818 ORTHO05D005444 9.8e-11 69.3 52 67.3
Gohir.D04G165300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 1.3e-10 68.9 54 70.4
Os04g0117100 Oryza sativa ssp. japonica HOM05D004818 ORTHO05D005444 1.3e-10 68.9 53 69.8
CANSAT11G1677 Cannabis sativa HOM05D004818 ORTHO05D005444 1.7e-10 68.6 54 70.4
Potri.002G024900 Populus trichocarpa HOM05D004818 ORTHO05D005444 1.7e-10 68.6 54 70.4
Sabra02G0020200 Salix brachista HOM05D004047 ORTHO05D004772 1.7e-10 68.6 54 70.4
BolC5t35118H Brassica oleracea HOM05D004818 ORTHO05D005444 2.2e-10 68.2 54 66.7
HanXRQChr17g0551041 Helianthus annuus HOM05D004818 ORTHO05D005444 2.2e-10 68.2 54 68.5
Sed0003347 Sechium edule HOM05D004818 ORTHO05D005444 2.2e-10 68.2 54 68.5
CAN.G1329.6 Capsicum annuum HOM05D004818 ORTHO05D005444 2.8e-10 67.8 50 76.0
CARHR075920 Cardamine hirsuta HOM05D004818 ORTHO05D005444 2.8e-10 67.8 51 70.6
ClCG05G018500 Citrullus lanatus HOM05D004818 ORTHO05D005444 2.8e-10 67.8 54 74.1
Ciclev10003088m.g Citrus clementina HOM05D004818 ORTHO05D005444 2.8e-10 67.8 54 72.2
Duzib248G1544 Durio zibethinus HOM05D004818 ORTHO05D005444 2.8e-10 67.8 54 68.5
Gohir.A04G123300 Gossypium hirsutum HOM05D004818 ORTHO05D005444 2.8e-10 67.8 54 68.5
Gohir.D13G090600 Gossypium hirsutum HOM05D004818 ORTHO05D005444 3.7e-10 67.4 54 68.5
Gorai.001G244100 Gossypium raimondii HOM05D004818 ORTHO05D005444 3.7e-10 67.4 54 68.5
Lsat_1_v5_gn_4_67521 Lactuca sativa HOM05D004818 ORTHO05D005444 3.7e-10 67.4 54 66.7
THA.LOC109116196 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 3.7e-10 67.4 54 70.4
TAR625G1092 Trochodendron aralioides HOM05D004818 ORTHO05D005444 3.7e-10 67.4 54 72.2
Cfa005123 Carpinus fangiana HOM05D004818 ORTHO05D005444 4.8e-10 67.0 54 66.7
Lalb_Chr03g0025281 Lupinus albus HOM05D004818 ORTHO05D005444 4.8e-10 67.0 54 70.4
Atru.chr5.3177 Acer truncatum HOM05D004818 ORTHO05D005444 6.3e-10 66.6 54 70.4
Thhalv10021899m.g Eutrema salsugineum HOM05D004818 ORTHO05D005444 6.3e-10 66.6 54 66.7
Cpa.g.sc150.3 Carica papaya HOM05D004818 ORTHO05D005444 8.3e-10 66.2 54 70.4
Manes.04G082300 Manihot esculenta HOM05D004818 ORTHO05D005444 8.3e-10 66.2 54 68.5
COL.COLO4_10615 Corchorus olitorius HOM05D004818 ORTHO05D005444 1.1e-09 65.9 54 66.7
Lsat_1_v5_gn_8_127140 Lactuca sativa HOM05D004818 ORTHO05D005444 1.1e-09 65.9 54 66.7
Potri.004G164066 Populus trichocarpa HOM05D004818 ORTHO05D005444 1.1e-09 65.9 54 66.7
PGR142G0584 Punica granatum HOM05D004818 ORTHO05D005444 1.1e-09 65.9 54 66.7
Sed0012644 Sechium edule HOM05D004818 ORTHO05D005444 1.1e-09 65.9 54 72.2
THA.LOC104821019 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 1.1e-09 65.9 50 72.0
Duzib052G0912 Durio zibethinus HOM05D004818 ORTHO05D005444 1.4e-09 65.5 54 68.5
TAR628G1422 Trochodendron aralioides HOM05D004818 ORTHO05D005444 1.4e-09 65.5 54 70.4
FAN15G1739 Fragaria x ananassa HOM05D004818 ORTHO05D005444 1.8e-09 65.1 54 70.4
Glyma.12G036000 Glycine max HOM05D004818 ORTHO05D005444 1.8e-09 65.1 54 68.5
TAR381G0131 Trochodendron aralioides HOM05D004818 ORTHO05D005444 1.8e-09 65.1 54 70.4
Eucgr.G01742 Eucalyptus grandis HOM05D004818 ORTHO05D005444 2.4e-09 64.7 54 66.7
Gohir.A13G086700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 2.4e-09 64.7 54 66.7
MD10G1061700 Malus domestica HOM05D004818 ORTHO05D005444 2.4e-09 64.7 54 66.7
Sed0015314 Sechium edule HOM05D004818 ORTHO05D005444 2.4e-09 64.7 54 70.4
CiPaw.09G132900 Carya illinoinensis HOM05D004818 ORTHO05D005444 3.1e-09 64.3 54 68.5
Solyc01g110540.3 Solanum lycopersicum HOM05D004818 ORTHO05D005444 3.1e-09 64.3 50 74.0
PGSC0003DMG400001656 Solanum tuberosum HOM05D004818 ORTHO05D005444 3.1e-09 64.3 50 74.0
TWI31G1300 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 3.1e-09 64.3 54 64.8
Medtr4g072130 Medicago truncatula HOM05D004818 ORTHO05D005444 4.1e-09 63.9 52 69.2
Prupe.8G082400 Prunus persica HOM05D004818 ORTHO05D005444 4.1e-09 63.9 52 69.2
TWI79G1427 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 4.1e-09 63.9 54 64.8
BcaC01g04504 Brassica carinata HOM05D004818 ORTHO05D005444 5.4e-09 63.5 39 79.5
Ca_09579_v3 Cicer arietinum L. HOM05D004818 ORTHO05D005444 5.4e-09 63.5 54 63.0
Migut.N01294 Erythranthe guttata HOM05D004818 ORTHO05D005444 5.4e-09 63.5 54 66.7
Potri.009G125832 Populus trichocarpa HOM05D004818 ORTHO05D005444 5.4e-09 63.5 56 62.5
Prupe.1G368600 Prunus persica HOM05D004818 ORTHO05D005444 5.4e-09 63.5 54 70.4
MD00G1066700 Malus domestica HOM05D004818 ORTHO05D005444 7.0e-09 63.2 54 64.8
RcHm_v2.0_Chr6g0268521 Rosa chinensis HOM05D004818 ORTHO05D005444 7.0e-09 63.2 54 68.5
CiPaw.06G127200 Carya illinoinensis HOM05D004818 ORTHO05D005444 9.1e-09 62.8 50 66.0
Eucgr.I01336 Eucalyptus grandis HOM05D004818 ORTHO05D005444 1.2e-08 62.4 54 63.0
Gohir.A12G040700 Gossypium hirsutum HOM05D004818 ORTHO05D005444 1.2e-08 62.4 54 64.8
PSO541G2816 Papaver somniferum HOM05D004818 ORTHO05D005444 1.2e-08 62.4 52 71.2
AT3G01130 Arabidopsis thaliana HOM05D004818 ORTHO05D005444 1.6e-08 62.0 41 73.2
BraA05t23174Z Brassica rapa HOM05D004818 ORTHO05D005444 1.6e-08 62.0 39 76.9
Ciclev10029771m.g Citrus clementina HOM05D004818 ORTHO05D005444 1.6e-08 62.0 54 63.0
Lj3g0020574 Lotus japonicus HOM05D004818 ORTHO05D005444 1.6e-08 62.0 54 61.1
Lalb_Chr01g0002101 Lupinus albus HOM05D004818 ORTHO05D005444 1.6e-08 62.0 54 66.7
Lalb_Chr19g0139031 Lupinus albus HOM05D004818 ORTHO05D005444 1.6e-08 62.0 50 72.0
VMungo1127G0843 Vigna mungo HOM05D004818 ORTHO05D005444 1.6e-08 62.0 54 64.8
Aqoxy5G01447 Aquilegia oxysepala HOM05D004818 ORTHO05D005444 2.0e-08 61.6 54 66.7
Phvul.011G038100 Phaseolus vulgaris HOM05D004818 ORTHO05D005444 2.0e-08 61.6 54 63.0
Hund06293 Selenicereus undatus HOM05D004818 ORTHO05D005444 2.7e-08 61.2 50 66.0
vmacro17409 Vaccinium macrocarpon HOM05D004818 ORTHO05D005444 2.7e-08 61.2 39 76.9
Manes.11G092164 Manihot esculenta HOM05D004818 ORTHO05D005444 3.5e-08 60.8 39 74.4
Sabra09G0096800 Salix brachista HOM05D004818 ORTHO05D005444 3.5e-08 60.8 56 60.7
Sc18g0005450 Simmondsia chinensis HOM05D004818 ORTHO05D005444 3.5e-08 60.8 39 76.9
Aa31LG11G14220 Aethionema arabicum HOM05D004818 ORTHO05D005444 4.5e-08 60.5 39 79.5
Rhsim11G0184800 Rhododendron simsii HOM05D004818 ORTHO05D005444 4.5e-08 60.5 36 83.3
CsaV3_3G045680 Cucumis sativus L. HOM05D004818 ORTHO05D005444 5.9e-08 60.1 48 68.8
CSS0030409 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 7.7e-08 59.7 38 78.9
TWI75G0908 Tripterygium wilfordii HOM05D004818 ORTHO05D005444 7.7e-08 59.7 52 61.5
ClCG02G004430 Citrullus lanatus HOM05D004818 ORTHO05D005444 1.0e-07 59.3 35 85.7
Gohir.D12G031701 Gossypium hirsutum HOM05D004818 ORTHO05D005444 1.0e-07 59.3 38 76.3
RcHm_v2.0_Chr6g0302511 Rosa chinensis HOM05D004818 ORTHO05D005444 1.0e-07 59.3 54 63.0
Atru.chr10.813 Acer truncatum HOM05D004818 ORTHO05D005444 1.3e-07 58.9 53 62.3
arahy.Tifrunner.gnm1.ann1.LS9ND1 Arachis hypogaea HOM05D004818 ORTHO05D005444 1.3e-07 58.9 38 78.9
Duzib132G0136 Durio zibethinus HOM05D004818 ORTHO05D005444 1.3e-07 58.9 38 78.9
PGR042G0239 Punica granatum HOM05D004818 ORTHO05D005444 1.3e-07 58.9 39 76.9
PGSC0003DMG400004424 Solanum tuberosum HOM05D004818 ORTHO05D005444 1.3e-07 58.9 50 66.0
GSVIVG01009863001 Vitis vinifera HOM05D004818 ORTHO05D005444 1.3e-07 58.9 67 55.2
Migut.B00126 Erythranthe guttata HOM05D004818 ORTHO05D005444 2.2e-07 58.2 50 64.0
FAN15G2220 Fragaria x ananassa HOM05D012912 ORTHO05D005444 2.2e-07 58.2 38 78.9
CSS0029185 Camellia sinensis var. sinensis HOM05D004818 ORTHO05D005444 2.9e-07 57.8 38 76.3
CAN.G104.4 Capsicum annuum HOM05D004818 ORTHO05D005444 2.9e-07 57.8 50 66.0
Nn5g29275 Nelumbo nucifera HOM05D004818 ORTHO05D005444 2.9e-07 57.8 38 76.3
Nn6g32305 Nelumbo nucifera HOM05D004818 ORTHO05D005444 3.8e-07 57.4 38 76.3
Rhsim05G0067400 Rhododendron simsii HOM05D004818 ORTHO05D005444 3.8e-07 57.4 41 68.3
Oeu020676.1 Olea europaea HOM05D004818 ORTHO05D005444 5.0e-07 57.0 39 74.4
SalBow3G2817 Salvia bowleyana HOM05D004818 ORTHO05D005444 8.5e-07 56.2 39 74.4
THA.LOC104805479 Tarenaya hassleriana HOM05D004818 ORTHO05D005444 8.5e-07 56.2 54 57.4
MELO3C003769.2 Cucumis melo HOM05D004818 ORTHO05D005444 1.5e-06 55.5 38 76.3
CDE02G1235 Ceratophyllum demersum HOM05D004818 ORTHO05D005444 1.9e-06 55.1 50 58.0
FvH4_2g40204 Fragaria vesca HOM05D004818 ORTHO05D005444 1.9e-06 55.1 38 76.3
FvH4_2g40200 Fragaria vesca HOM05D004818 ORTHO05D005444 4.2e-06 53.9 37 75.7
Atru.chr13.327 Acer truncatum HOM05D004818 ORTHO05D005444 7.2e-06 53.1 35 77.1
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 7.2e-06 53.1 44 59.1
Hund00181 Selenicereus undatus HOM05D004818 ORTHO05D005444 7.2e-06 53.1 51 56.9
Cc09_g06640 Coffea canephora HOM05D000190 ORTHO05D005444 9.5e-06 52.8 38 71.1
FAN20G1549 Fragaria x ananassa HOM05D004818 ORTHO05D005444 9.5e-06 52.8 39 69.2
Peaxi162Scf00538g00229 Petunia axillaris HOM05D004818 ORTHO05D005444 9.5e-06 52.8 34 76.5


User provided reference genes

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