Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36879 Brassica carinata HOM05D002617 ORTHO05D009035 0.0e+00 1237.6 624 100.0
C09p61030 Brassica napus HOM05D002617 ORTHO05D009035 0.0e+00 1125.9 626 92.5
BolC9t58948H Brassica oleracea HOM05D002617 ORTHO05D009035 0.0e+00 1122.5 626 92.0
A10p23040 Brassica napus HOM05D002617 ORTHO05D009035 0.0e+00 1114.4 626 91.7
BraA10t44373Z Brassica rapa HOM05D002617 ORTHO05D009035 0.0e+00 1114.4 626 91.7
CARHR197300 Cardamine hirsuta HOM05D002617 ORTHO05D009035 1.0e-303 1046.2 621 86.2
Carub.0006s1420 Capsella rubella HOM05D002617 ORTHO05D009035 4.4e-291 1004.2 622 81.7
BcaC04g18915 Brassica carinata HOM05D002617 ORTHO05D009035 6.3e-290 1000.3 570 90.4
Thhalv10015867m.g Eutrema salsugineum HOM05D002617 ORTHO05D009035 7.0e-289 996.9 615 83.3
AL6G26890 Arabidopsis lyrata HOM05D002617 ORTHO05D009035 1.6e-285 985.7 620 82.9
AT5G16020 Arabidopsis thaliana HOM05D002617 ORTHO05D009035 9.8e-283 976.5 614 81.8
Aa31LG11G13590 Aethionema arabicum HOM05D002617 ORTHO05D009035 7.1e-233 810.8 633 67.3
THA.LOC104827464 Tarenaya hassleriana HOM05D002617 ORTHO05D009035 5.9e-195 684.9 491 68.6
QL02p053130 Quercus lobata HOM05D002617 ORTHO05D009035 3.4e-158 562.8 558 50.9
Cfa007960 Carpinus fangiana HOM05D002617 ORTHO05D009035 9.8e-158 561.2 552 52.0
TAR629G1601 Trochodendron aralioides HOM05D002617 ORTHO05D009035 1.7e-157 560.5 552 52.2
Prupe.3G241200 Prunus persica HOM05D002617 ORTHO05D009035 4.9e-157 558.9 566 50.5
TWI53G1449 Tripterygium wilfordii HOM05D002617 ORTHO05D009035 1.1e-156 557.8 652 46.5
Dinv33921 Davidia involucrata HOM05D002617 ORTHO05D009035 1.9e-153 547.0 547 51.2
PGR042G2862 Punica granatum HOM05D002617 ORTHO05D009035 1.9e-153 547.0 554 51.8
FvH4_6g45490 Fragaria vesca HOM05D002617 ORTHO05D009035 2.8e-152 543.1 554 50.5
Thecc.04G140600 Theobroma cacao HOM05D002617 ORTHO05D009035 2.8e-152 543.1 557 51.3
Actinidia36305 Actinidia chinensis HOM05D002617 ORTHO05D009035 3.6e-152 542.7 605 49.4
Nn3g17671 Nelumbo nucifera HOM05D002617 ORTHO05D009035 4.0e-151 539.3 614 48.0
FAN05G4565 Fragaria x ananassa HOM05D002617 ORTHO05D009035 7.5e-150 535.0 641 47.0
Cfa007963 Carpinus fangiana HOM05D002617 ORTHO05D009035 3.7e-149 532.7 568 49.8
Hma1.2p1_0136F.1_g062000 Hydrangea macrophylla HOM05D002617 ORTHO05D009035 5.4e-148 528.9 576 49.1
CSS0020455 Camellia sinensis var. sinensis HOM05D002617 ORTHO05D009035 1.6e-147 527.3 562 49.3
Rhsim10G0064400 Rhododendron simsii HOM05D002617 ORTHO05D009035 3.0e-146 523.1 605 47.8
PSO832G3224 Papaver somniferum HOM05D002617 ORTHO05D009035 1.5e-145 520.8 591 45.9
RcHm_v2.0_Chr2g0163431 Rosa chinensis HOM05D002617 ORTHO05D009035 2.5e-145 520.0 594 46.5
Sabra04G0077100 Salix brachista HOM05D002617 ORTHO05D009035 1.2e-144 517.7 597 46.9
Medtr6g016985 Medicago truncatula HOM05D002617 ORTHO05D009035 1.6e-144 517.3 601 47.3
DCAR_011250 Daucus carota HOM05D002617 ORTHO05D009035 4.7e-144 515.8 548 48.7
PSO478G1567 Papaver somniferum HOM05D002617 ORTHO05D009035 5.2e-143 512.3 619 44.4
COL.COLO4_16208 Corchorus olitorius HOM05D002617 ORTHO05D009035 1.2e-142 511.1 613 47.6
Phvul.005G010600 Phaseolus vulgaris HOM05D002617 ORTHO05D009035 7.6e-142 508.4 555 48.5
Peaxi162Scf00479g00211 Petunia axillaris HOM05D002617 ORTHO05D009035 2.1e-139 500.4 572 47.4
Duzib151G0578 Durio zibethinus HOM05D002617 ORTHO05D009035 4.6e-139 499.2 605 46.9
Lj2g0019105 Lotus japonicus HOM05D002617 ORTHO05D009035 6.0e-139 498.8 599 46.4
Aqoxy3G00430 Aquilegia oxysepala HOM05D002617 ORTHO05D009035 6.6e-138 495.4 576 46.2
CiPaw.09G147400 Carya illinoinensis HOM05D002617 ORTHO05D009035 6.6e-138 495.4 508 50.4
Cc07_g05000 Coffea canephora HOM05D002617 ORTHO05D009035 1.1e-137 494.6 600 45.7
Psat1g062120 Pisum sativum HOM05D002617 ORTHO05D009035 2.5e-137 493.4 601 46.1
Gohir.A10G140200 Gossypium hirsutum HOM05D002617 ORTHO05D009035 4.7e-136 489.2 596 46.8
AUR62008950 Chenopodium quinoa HOM05D002617 ORTHO05D009035 8.1e-136 488.4 611 44.2
Lj4A130G15 Lonicera japonica HOM05D002617 ORTHO05D009035 1.2e-134 484.6 604 46.5
Gohir.D10G126600 Gossypium hirsutum HOM05D002617 ORTHO05D009035 4.4e-134 482.6 596 45.6
GSVIVG01036455001 Vitis vinifera HOM05D002617 ORTHO05D009035 4.4e-134 482.6 486 52.1
HPP92_020267 Vanilla planifolia HOM05D002617 ORTHO05D009035 7.1e-132 475.3 607 42.5
Glyma.13G047800 Glycine max HOM05D002617 ORTHO05D009035 9.3e-132 474.9 521 47.8
MBI16_g23736_MAGBIO Magnolia biondii HOM05D002617 ORTHO05D009035 1.7e-130 470.7 545 43.5
Oeu043862.1 Olea europaea HOM05D002617 ORTHO05D009035 1.5e-129 467.6 591 43.5
arahy.Tifrunner.gnm1.ann1.7SH6PF Arachis hypogaea HOM05D002617 ORTHO05D009035 5.6e-129 465.7 594 44.3
TPR.G9672 Trifolium pratense HOM05D002617 ORTHO05D009035 5.6e-129 465.7 450 51.8
Ciclev10013582m.g Citrus clementina HOM05D002617 ORTHO05D009035 9.6e-129 464.9 482 51.9
arahy.Tifrunner.gnm1.ann1.37DWZ9 Arachis hypogaea HOM05D002617 ORTHO05D009035 1.4e-127 461.1 606 42.9
FAN14G1977 Fragaria x ananassa HOM05D002617 ORTHO05D009035 2.4e-127 460.3 591 45.2
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 2.4e-127 460.3 596 45.6
EL10Ac2g04621 Beta vulgaris HOM05D002617 ORTHO05D009035 1.2e-126 458.0 550 45.8
Gorai.011G139500 Gossypium raimondii HOM05D002617 ORTHO05D009035 3.8e-125 453.0 596 44.0
Sc11g0008110 Simmondsia chinensis HOM05D002617 ORTHO05D009035 4.2e-124 449.5 500 48.0
Nitab4.5_0000612g0170 Nicotiana tabacum HOM05D002617 ORTHO05D009035 5.4e-124 449.1 606 43.7
MD09G1082500 Malus domestica HOM05D002617 ORTHO05D009035 1.3e-120 438.0 451 49.7
Sopen03g009540 Solanum pennellii HOM05D002617 ORTHO05D009035 9.0e-119 431.8 573 43.1
Eucgr.J01458 Eucalyptus grandis HOM05D002617 ORTHO05D009035 2.9e-117 426.8 630 39.7
Lsat_1_v5_gn_2_86600 Lactuca sativa HOM05D002617 ORTHO05D009035 3.8e-117 426.4 640 38.4
Haze_14108 Corylus avellana HOM05D002617 ORTHO05D009035 4.9e-117 426.0 557 43.6
Ah.06g191010 Amaranthus hybridus HOM05D002617 ORTHO05D009035 6.4e-117 425.6 493 45.6
Manes.02G065900 Manihot esculenta HOM05D002617 ORTHO05D009035 6.4e-117 425.6 426 53.1
Ca_14082_v3 Cicer arietinum L. HOM05D002617 ORTHO05D009035 2.7e-115 420.2 480 47.7
Cpa.g.sc179.39 Carica papaya HOM05D002617 ORTHO05D009035 4.6e-115 419.5 616 41.1
Atru.chr8.789 Acer truncatum HOM05D002617 ORTHO05D009035 6.0e-115 419.1 380 53.9
Ah.06g191000 Amaranthus hybridus HOM05D002617 ORTHO05D009035 1.1e-113 414.8 493 45.0
Zm00001eb161540 Zea mays HOM05D002617 ORTHO05D009035 1.1e-113 414.8 583 39.8
Glyma.14G157500 Glycine max HOM05D002617 ORTHO05D009035 4.8e-112 409.5 420 48.6
Potri.004G104500 Populus trichocarpa HOM05D002617 ORTHO05D009035 1.4e-111 407.9 430 51.4
FAN09G3897 Fragaria x ananassa HOM05D002617 ORTHO05D009035 2.4e-111 407.1 586 41.6
vmacro05580 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 1.5e-110 404.4 375 54.7
Migut.H00535 Erythranthe guttata HOM05D002617 ORTHO05D009035 4.2e-108 396.4 528 43.4
Nitab4.5_0003461g0060 Nicotiana tabacum HOM05D002617 ORTHO05D009035 7.1e-108 395.6 612 39.7
PSO013G0088 Papaver somniferum HOM05D002617 ORTHO05D009035 3.3e-105 386.7 482 44.6
CiPaw.09G147200 Carya illinoinensis HOM05D002617 ORTHO05D009035 5.7e-105 386.0 412 49.8
ATR0820G227 Amborella trichopoda HOM05D002617 ORTHO05D009035 3.4e-102 376.7 497 39.6
AUR62014551 Chenopodium quinoa HOM05D002617 ORTHO05D009035 7.6e-102 375.6 384 48.4
ECA238G3370 Erigeron canadensis HOM05D002617 ORTHO05D009035 4.6e-99 366.3 532 40.0
HanXRQChr14g0452391 Helianthus annuus HOM05D002617 ORTHO05D009035 3.9e-98 363.2 623 36.3
SHI30168 Sapria himalayana HOM05D002617 ORTHO05D009035 3.1e-95 353.6 547 38.6
Os01g0605400 Oryza sativa ssp. japonica HOM05D002617 ORTHO05D009035 6.9e-95 352.4 552 38.4
CANSAT56G0222 Cannabis sativa HOM05D002617 ORTHO05D009035 7.2e-92 342.4 345 50.4
Solyc03g045080.3 Solanum lycopersicum HOM05D002617 ORTHO05D009035 2.3e-82 310.8 377 45.9
SalBow1G3878 Salvia bowleyana HOM05D002617 ORTHO05D009035 1.5e-81 308.1 435 43.0
Lalb_Chr10g0092311 Lupinus albus HOM05D002617 ORTHO05D009035 1.2e-78 298.5 338 46.7
FAN02G3888 Fragaria x ananassa HOM05D002617 ORTHO05D009035 1.3e-77 295.0 290 49.3
unitig_899.g15127 Utricularia gibba HOM05D002617 ORTHO05D009035 1.1e-76 292.0 598 35.6
CDE06G1275 Ceratophyllum demersum HOM05D002617 ORTHO05D009035 5.2e-74 283.1 331 45.9
CAN.G153.15 Capsicum annuum HOM05D002617 ORTHO05D009035 1.0e-69 268.9 456 39.0
Actinidia18118 Actinidia chinensis HOM05D002617 ORTHO05D009035 3.8e-69 266.9 256 51.2
CANSAT56G4171 Cannabis sativa HOM05D002617 ORTHO05D009035 1.5e-68 265.0 251 49.8
PGSC0003DMG400018767 Solanum tuberosum HOM05D002617 ORTHO05D009035 3.5e-62 243.8 433 37.2
FAN02G3008 Fragaria x ananassa HOM05D002617 ORTHO05D009035 4.5e-54 216.9 288 45.5
CANSAT56G3033 Cannabis sativa HOM05D002617 ORTHO05D009035 8.3e-48 196.1 318 42.5
CiPaw.09G170800 Carya illinoinensis HOM05D002617 ORTHO05D009035 8.3e-40 169.5 184 50.0
arahy.Tifrunner.gnm1.ann1.3A0B2Z Arachis hypogaea HOM05D002617 ORTHO05D009035 8.1e-27 126.3 199 41.7
Haze_14109 Corylus avellana HOM05D002617 ORTHO05D006076 4.0e-26 124.0 151 51.0
MSTRG.23827 Avicennia marina HOM05D002617 ORTHO05D009035 1.5e-25 122.1 215 40.0
Haze_14111 Corylus avellana HOM05D002617 ORTHO05D006076 2.6e-25 121.3 146 51.4
vmacro05579 Vaccinium macrocarpon HOM05D002617 ORTHO05D009035 1.4e-23 115.5 151 46.4
SMO116G0487 Selaginella moellendorffii HOM05D002617 ORTHO05D009035 1.4e-18 99.0 262 24.0
Lalb_Chr10g0092301 Lupinus albus HOM05D002617 ORTHO05D009035 3.0e-13 81.3 56 55.4
Lalb_Chr10g0092321 Lupinus albus HOM05D002617 ORTHO05D009035 1.1e-10 72.8 68 54.4
TAR705G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.4e-10 71.6 60 51.7
Lalb_Chr10g0092331 Lupinus albus HOM05D002617 ORTHO05D009035 2.7e-06 58.2 103 38.8
Nn4g26093 Nelumbo nucifera HOM05D001650 ORTHO05D001592 6.0e-06 57.0 90 40.0


User provided reference genes

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