Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36868 Brassica carinata HOM05D005714 ORTHO05D006812 6.0e-50 200.7 111 100.0
BcaB08g36870 Brassica carinata HOM05D005714 ORTHO05D006812 1.8e-33 146.0 126 73.0
BraA10t44382Z Brassica rapa HOM05D005714 ORTHO05D006812 2.1e-31 139.0 122 70.5
Sp6g28230 Schrenkiella parvula HOM05D005714 ORTHO05D006812 2.8e-31 138.7 129 70.5
CARHR197420 Cardamine hirsuta HOM05D005714 ORTHO05D006812 1.5e-29 132.9 122 70.5
AT5G15880 Arabidopsis thaliana HOM05D005714 ORTHO05D006812 7.6e-29 130.6 122 68.0
AL6G26770 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 1.3e-28 129.8 122 68.9
AL6G26782 Arabidopsis lyrata HOM05D005714 ORTHO05D006812 1.3e-28 129.8 122 68.9
Aa31LG11G13710 Aethionema arabicum HOM05D005714 ORTHO05D006812 1.7e-28 129.4 122 68.0
Thhalv10015850m.g Eutrema salsugineum HOM05D005714 ORTHO05D006812 8.4e-28 127.1 129 66.7
Carub.0006s1407 Capsella rubella HOM05D005714 ORTHO05D006812 1.6e-26 122.9 122 65.6
BcaB01g05015 Brassica carinata HOM05D005714 ORTHO05D006812 1.2e-21 106.7 129 61.2
BraA03t10072Z Brassica rapa HOM05D005714 ORTHO05D006812 2.0e-21 105.9 129 60.5
BraA03t10075Z Brassica rapa HOM05D005714 ORTHO05D006812 2.0e-21 105.9 129 60.5
A03p07460 Brassica napus HOM05D005714 ORTHO05D006812 4.5e-21 104.8 129 59.7
C03p08640 Brassica napus HOM05D005714 ORTHO05D006812 7.6e-21 104.0 129 59.7
BolC3t13366H Brassica oleracea HOM05D005714 ORTHO05D006812 7.6e-21 104.0 129 59.7
BolC9t58957H Brassica oleracea HOM05D005714 ORTHO05D006812 8.4e-20 100.5 132 56.8
C03p08510 Brassica napus HOM05D005714 ORTHO05D006812 1.4e-19 99.8 129 58.9
THA.LOC104802994 Tarenaya hassleriana HOM05D005714 ORTHO05D006812 4.2e-19 98.2 122 54.1
BolC3t13356H Brassica oleracea HOM05D005714 ORTHO05D006812 5.5e-19 97.8 129 58.1
Thecc.04G144400 Theobroma cacao HOM05D005714 ORTHO05D006812 4.2e-11 71.6 121 46.3
Cpa.g.sc179.47 Carica papaya HOM05D005714 ORTHO05D006812 1.6e-10 69.7 122 42.6
MBI15_g36941_MAGBIO Magnolia biondii HOM05D005714 ORTHO05D006812 2.1e-10 69.3 124 42.7
Duzib138G1804 Durio zibethinus HOM05D005714 ORTHO05D006812 2.7e-10 68.9 122 43.4
CSS0044543 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 2.3e-09 65.9 127 45.7
CSS0047938 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 2.3e-09 65.9 127 45.7
Dinv33913 Davidia involucrata HOM05D005714 ORTHO05D006812 2.3e-09 65.9 121 44.6
GSVIVG01036468001 Vitis vinifera HOM05D005714 ORTHO05D006812 3.9e-09 65.1 121 42.1
CiPaw.03G006400 Carya illinoinensis HOM05D005714 ORTHO05D006812 8.8e-09 63.9 129 41.9
CANSAT64G2721 Cannabis sativa HOM05D005714 ORTHO05D006812 1.5e-08 63.2 121 41.3
Eucgr.J01456 Eucalyptus grandis HOM05D005714 ORTHO05D006812 1.5e-08 63.2 124 41.1
FvH4_6g45610 Fragaria vesca HOM05D005714 ORTHO05D006812 1.9e-08 62.8 120 41.7
Gohir.A11G168300 Gossypium hirsutum HOM05D005714 ORTHO05D006812 1.9e-08 62.8 128 41.4
QL02p053457 Quercus lobata HOM05D005714 ORTHO05D006812 1.9e-08 62.8 121 43.0
Medtr6g016870 Medicago truncatula HOM05D005714 ORTHO05D006812 3.3e-08 62.0 125 41.6
MD17G1072600 Malus domestica HOM05D005714 ORTHO05D006812 4.3e-08 61.6 120 43.3
Sabra17G0092200 Salix brachista HOM05D005714 ORTHO05D006812 4.3e-08 61.6 121 39.7
Ciclev10012317m.g Citrus clementina HOM05D005714 ORTHO05D006812 5.7e-08 61.2 121 41.3
Phvul.004G049100 Phaseolus vulgaris HOM05D005714 ORTHO05D006812 7.4e-08 60.8 121 42.1
RcHm_v2.0_Chr2g0163761 Rosa chinensis HOM05D005714 ORTHO05D006812 9.7e-08 60.5 117 41.0
Hund16108 Selenicereus undatus HOM05D005714 ORTHO05D006812 9.7e-08 60.5 119 38.7
Actinidia36301 Actinidia chinensis HOM05D005714 ORTHO05D006812 1.3e-07 60.1 120 41.7
MD09G1081200 Malus domestica HOM05D005714 ORTHO05D006812 2.2e-07 59.3 127 42.5
Psat1g062640 Pisum sativum HOM05D005714 ORTHO05D006812 2.2e-07 59.3 134 44.0
Prupe.3G242300 Prunus persica HOM05D005714 ORTHO05D006812 2.2e-07 59.3 128 43.0
PGR042G2576 Punica granatum HOM05D005714 ORTHO05D006812 2.2e-07 59.3 125 40.0
FAN05G0119 Fragaria x ananassa HOM05D005714 ORTHO05D006812 3.7e-07 58.5 116 42.2
Gohir.D11G174600 Gossypium hirsutum HOM05D005714 ORTHO05D006812 3.7e-07 58.5 128 39.8
Gorai.007G187100 Gossypium raimondii HOM05D005714 ORTHO05D006812 3.7e-07 58.5 128 39.8
Lj7A8G44 Lonicera japonica HOM05D005714 ORTHO05D006812 3.7e-07 58.5 121 42.1
Potri.004G105400 Populus trichocarpa HOM05D005714 ORTHO05D006812 4.8e-07 58.2 121 37.2
BcaC04g18926 Brassica carinata HOM05D005714 ORTHO05D006812 6.3e-07 57.8 53 69.8
CSS0016024 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 6.3e-07 57.8 121 42.1
CSS0020756 Camellia sinensis var. sinensis HOM05D005714 ORTHO05D006812 6.3e-07 57.8 121 42.1
Potri.017G110300 Populus trichocarpa HOM05D005714 ORTHO05D006812 6.3e-07 57.8 121 38.0
Peaxi162Scf00479g00037 Petunia axillaris HOM05D005714 ORTHO05D006812 1.1e-06 57.0 118 41.5
arahy.Tifrunner.gnm1.ann1.AEQW57 Arachis hypogaea HOM05D005714 ORTHO05D006812 1.4e-06 56.6 122 42.6
Manes.02G065100 Manihot esculenta HOM05D005714 ORTHO05D006812 1.4e-06 56.6 121 36.4
COL.COLO4_03920 Corchorus olitorius HOM05D005714 ORTHO05D006812 1.8e-06 56.2 119 40.3
Nitab4.5_0000612g0140 Nicotiana tabacum HOM05D005714 ORTHO05D006812 2.4e-06 55.8 118 41.5
TPR.G9671 Trifolium pratense HOM05D005714 ORTHO05D006812 2.4e-06 55.8 130 39.2
Cfa007977 Carpinus fangiana HOM05D001801 ORTHO05D001739 3.1e-06 55.5 120 40.8
Atru.BG.225.p Acer truncatum HOM05D005714 ORTHO05D006812 5.3e-06 54.7 115 38.3
SGA_v2.0_scaffold204G41660 Striga asiatica HOM05D005714 ORTHO05D006812 5.3e-06 54.7 119 37.8
Nitab4.5_0003161g0010 Nicotiana tabacum HOM05D005714 ORTHO05D006812 9.1e-06 53.9 119 38.7
PSO782G2399 Papaver somniferum HOM05D005714 ORTHO05D006812 9.1e-06 53.9 121 40.5


User provided reference genes

Program Settings