Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36849 Brassica carinata HOM05D005439 ORTHO05D006793 4.8e-58 227.6 117 100.0
C09p60700 Brassica napus HOM05D005439 ORTHO05D006793 2.5e-46 188.7 112 84.8
Sp6g27700 Schrenkiella parvula HOM05D005439 ORTHO05D006793 1.0e-44 183.3 109 85.3
BraA02t05327Z Brassica rapa HOM05D005439 ORTHO05D006793 6.8e-44 180.6 112 81.2
C02p08370 Brassica napus HOM05D005439 ORTHO05D006793 1.4e-41 172.9 115 77.4
BolC2t06755H Brassica oleracea HOM05D005439 ORTHO05D006793 1.4e-41 172.9 115 77.4
A02p03560 Brassica napus HOM05D005439 ORTHO05D006793 1.8e-41 172.6 113 79.6
CARHR090470 Cardamine hirsuta HOM05D005439 ORTHO05D006793 1.7e-39 166.0 117 74.4
Aa31LG8G2660 Aethionema arabicum HOM05D005439 ORTHO05D006793 2.2e-34 149.1 114 71.1
AT3G15420 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 1.8e-33 146.0 108 75.0
Carub.0003s1515 Capsella rubella HOM05D005439 ORTHO05D006793 3.1e-33 145.2 102 77.5
THA.LOC104815550 Tarenaya hassleriana HOM05D005439 ORTHO05D006793 4.1e-33 144.8 107 69.2
Thhalv10021755m.g Eutrema salsugineum HOM05D005439 ORTHO05D006793 9.2e-33 143.7 117 65.0
AT1G80745 Arabidopsis thaliana HOM05D005439 ORTHO05D006793 2.3e-31 139.0 107 72.9
AL3G27970 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 6.6e-31 137.5 98 73.5
AL2G40660 Arabidopsis lyrata HOM05D005439 ORTHO05D006793 2.5e-30 135.6 106 72.6
BcaC03g18493 Brassica carinata HOM05D005439 ORTHO05D006793 2.6e-27 125.6 78 83.3
BolC9t58901H Brassica oleracea HOM05D005439 ORTHO05D006793 2.9e-26 122.1 71 84.5
BcaC04g18875 Brassica carinata HOM05D005439 ORTHO05D006793 3.7e-26 121.7 71 84.5
Manes.15G085800 Manihot esculenta HOM05D005439 ORTHO05D006793 9.2e-25 117.1 116 50.9
Thecc.07G077600 Theobroma cacao HOM05D005439 ORTHO05D006793 2.0e-24 115.9 121 50.4
Cpa.g.sc53.123 Carica papaya HOM05D005439 ORTHO05D006793 2.7e-24 115.5 116 49.1
CiPaw.08G146000 Carya illinoinensis HOM05D005439 ORTHO05D006793 6.0e-24 114.4 125 51.2
Oeu037221.1 Olea europaea HOM05D005439 ORTHO05D006793 1.7e-23 112.8 121 52.1
CSS0022813 Camellia sinensis var. sinensis HOM05D005439 ORTHO05D006793 6.6e-23 110.9 125 45.6
CiPaw.12G120500 Carya illinoinensis HOM05D005439 ORTHO05D006793 6.6e-23 110.9 125 50.4
Dinv04318 Davidia involucrata HOM05D005439 ORTHO05D006793 6.6e-23 110.9 110 52.7
TWI15G0142 Tripterygium wilfordii HOM05D005439 ORTHO05D006793 8.6e-23 110.5 123 52.0
Nitab4.5_0003769g0120 Nicotiana tabacum HOM05D005439 ORTHO05D006793 1.1e-22 110.2 127 45.7
TAR624G0176 Trochodendron aralioides HOM05D005439 ORTHO05D006793 1.1e-22 110.2 112 52.7
Peaxi162Scf00998g00023 Petunia axillaris HOM05D005439 ORTHO05D006793 1.5e-22 109.8 125 47.2
Sc18g0002800 Simmondsia chinensis HOM05D005439 ORTHO05D006793 1.5e-22 109.8 124 46.0
MBI18_g17006_MAGBIO Magnolia biondii HOM05D005439 ORTHO05D006793 1.9e-22 109.4 91 61.5
Actinidia01110 Actinidia chinensis HOM05D005439 ORTHO05D006793 2.5e-22 109.0 116 48.3
SalBow7G3564 Salvia bowleyana HOM05D005439 ORTHO05D006793 2.5e-22 109.0 106 51.9
GSVIVG01014379001 Vitis vinifera HOM05D005439 ORTHO05D006793 2.5e-22 109.0 114 50.9
TAR626G0706 Trochodendron aralioides HOM05D005439 ORTHO05D006793 3.3e-22 108.6 112 51.8
ClCG11G007090 Citrullus lanatus HOM05D005439 ORTHO05D006793 4.3e-22 108.2 112 51.8
COL.COLO4_09427 Corchorus olitorius HOM05D005439 ORTHO05D006793 4.3e-22 108.2 113 50.4
Gohir.A08G188900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 4.3e-22 108.2 114 50.0
Gohir.D08G040300 Gossypium hirsutum HOM05D005439 ORTHO05D006793 4.3e-22 108.2 114 50.0
Gohir.D10G173200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 4.3e-22 108.2 114 50.0
Gohir.D11G168400 Gossypium hirsutum HOM05D005439 ORTHO05D006793 4.3e-22 108.2 114 50.0
Gorai.007G319700 Gossypium raimondii HOM05D005439 ORTHO05D006793 4.3e-22 108.2 114 50.0
Medtr2g079590 Medicago truncatula HOM05D005439 ORTHO05D006793 4.3e-22 108.2 127 48.0
Aqoxy1G02538 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 5.6e-22 107.8 133 45.9
Aqoxy6G01973 Aquilegia oxysepala HOM05D005439 ORTHO05D006793 9.5e-22 107.1 132 47.0
CAN.G162.72 Capsicum annuum HOM05D005439 ORTHO05D006793 9.5e-22 107.1 128 47.7
Gohir.D13G039100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 9.5e-22 107.1 114 50.0
Gohir.A05G386100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.2e-21 106.7 114 49.1
Gohir.D11G296600 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.2e-21 106.7 114 49.1
PSO675G4650 Papaver somniferum HOM05D005439 ORTHO05D006793 1.2e-21 106.7 118 49.2
Cc04_g05330 Coffea canephora HOM05D005439 ORTHO05D006793 1.6e-21 106.3 130 45.4
DCAR_000742 Daucus carota HOM05D005439 ORTHO05D006793 2.8e-21 105.5 112 52.7
Gohir.A11G282786 Gossypium hirsutum HOM05D005439 ORTHO05D006793 2.8e-21 105.5 114 49.1
Hund22944 Selenicereus undatus HOM05D005439 ORTHO05D006793 2.8e-21 105.5 123 47.2
Gohir.A08G058200 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.6e-21 105.1 114 49.1
Lsat_1_v5_gn_9_97181 Lactuca sativa HOM05D005439 ORTHO05D006793 4.7e-21 104.8 115 48.7
Rhsim04G0164900 Rhododendron simsii HOM05D005439 ORTHO05D006793 4.7e-21 104.8 129 46.5
EL10Ac4g09544 Beta vulgaris HOM05D005439 ORTHO05D006793 8.0e-21 104.0 121 47.1
Carub.0002s2680 Capsella rubella HOM05D005439 ORTHO05D006793 8.0e-21 104.0 74 67.6
Duzib170G0676 Durio zibethinus HOM05D005439 ORTHO05D006793 8.0e-21 104.0 113 48.7
Dinv30229 Davidia involucrata HOM05D005439 ORTHO05D006793 1.1e-20 103.6 111 49.5
Psat5g245080 Pisum sativum HOM05D005439 ORTHO05D006793 1.1e-20 103.6 130 42.3
Solyc07g063290.3 Solanum lycopersicum HOM05D005439 ORTHO05D006793 1.1e-20 103.6 132 43.2
Migut.H01926 Erythranthe guttata HOM05D005439 ORTHO05D006793 1.4e-20 103.2 100 55.0
Lalb_Chr20g0109751 Lupinus albus HOM05D005439 ORTHO05D006793 1.4e-20 103.2 117 47.9
MD03G1224300 Malus domestica HOM05D005439 ORTHO05D006793 1.4e-20 103.2 112 49.1
Potri.011G121800 Populus trichocarpa HOM05D005439 ORTHO05D006793 1.4e-20 103.2 113 46.9
Sed0007807 Sechium edule HOM05D005439 ORTHO05D006793 1.4e-20 103.2 111 52.3
AUR62034281 Chenopodium quinoa HOM05D005439 ORTHO05D006793 1.8e-20 102.8 110 49.1
Eucgr.I00444 Eucalyptus grandis HOM05D005439 ORTHO05D006793 1.8e-20 102.8 121 47.1
Glyma.13G278900 Glycine max HOM05D005439 ORTHO05D006793 1.8e-20 102.8 114 45.6
Nn1g04026 Nelumbo nucifera HOM05D005439 ORTHO05D006793 1.8e-20 102.8 134 43.3
TPR.G16054 Trifolium pratense HOM05D005439 ORTHO05D006793 1.8e-20 102.8 123 47.2
vmacro08610 Vaccinium macrocarpon HOM05D005439 ORTHO05D006793 1.8e-20 102.8 110 47.3
CANSAT80G2923 Cannabis sativa HOM05D005439 ORTHO05D006793 4.0e-20 101.7 123 45.5
RcHm_v2.0_Chr5g0034441 Rosa chinensis HOM05D005439 ORTHO05D006793 4.0e-20 101.7 129 44.2
PGSC0003DMG400001562 Solanum tuberosum HOM05D005439 ORTHO05D006793 4.0e-20 101.7 124 46.8
Gohir.A11G204100 Gossypium hirsutum HOM05D005439 ORTHO05D006793 5.2e-20 101.3 121 47.1
Sopen07g031460 Solanum pennellii HOM05D005439 ORTHO05D006793 6.8e-20 100.9 135 43.7
Gorai.010G125600 Gossypium raimondii HOM05D005439 ORTHO05D006793 8.9e-20 100.5 114 49.1
Sabra11G0107800 Salix brachista HOM05D005439 ORTHO05D006793 8.9e-20 100.5 128 44.5
Haze_09469 Corylus avellana HOM05D005439 ORTHO05D006793 1.2e-19 100.1 124 49.2
PGSC0003DMG400012454 Solanum tuberosum HOM05D005439 ORTHO05D006793 1.2e-19 100.1 135 44.4
HanXRQChr04g0095481 Helianthus annuus HOM05D005439 ORTHO05D006793 1.5e-19 99.8 110 44.5
arahy.Tifrunner.gnm1.ann1.5K0R4Y Arachis hypogaea HOM05D005439 ORTHO05D006793 2.0e-19 99.4 153 41.8
Prupe.4G185100 Prunus persica HOM05D005439 ORTHO05D006793 2.0e-19 99.4 115 45.2
MELO3C008192.2 Cucumis melo HOM05D005439 ORTHO05D006793 3.4e-19 98.6 112 49.1
Gorai.013G039600 Gossypium raimondii HOM05D005439 ORTHO05D006793 3.4e-19 98.6 114 50.9
PGR031G3442 Punica granatum HOM05D005439 ORTHO05D006793 4.4e-19 98.2 123 47.2
Gorai.013G217100 Gossypium raimondii HOM05D005439 ORTHO05D006793 5.8e-19 97.8 114 49.1
Atru.chr2.2728 Acer truncatum HOM05D005439 ORTHO05D006793 7.5e-19 97.4 118 45.8
Atru.chr2.2729 Acer truncatum HOM05D005439 ORTHO05D006793 7.5e-19 97.4 118 45.8
HPP92_001754 Vanilla planifolia HOM05D005439 ORTHO05D006793 7.5e-19 97.4 98 49.0
Gorai.012G015600 Gossypium raimondii HOM05D005439 ORTHO05D006793 9.8e-19 97.1 114 47.4
ECA240G1812 Erigeron canadensis HOM05D005439 ORTHO05D006793 1.3e-18 96.7 112 45.5
Lsat_1_v5_gn_9_97261 Lactuca sativa HOM05D005439 ORTHO05D006793 1.7e-18 96.3 110 44.5
Lj3g0027158 Lotus japonicus HOM05D005439 ORTHO05D006793 6.4e-18 94.4 115 42.6
Lj1g0010486 Lotus japonicus HOM05D005439 ORTHO05D006793 1.1e-17 93.6 119 42.0
RcHm_v2.0_Chr6g0279991 Rosa chinensis HOM05D005439 ORTHO05D006793 1.9e-17 92.8 125 41.6
FAN14G2189 Fragaria x ananassa HOM05D005439 ORTHO05D006793 9.2e-17 90.5 123 43.1
Gohir.A03G006900 Gossypium hirsutum HOM05D005439 ORTHO05D006793 3.5e-16 88.6 110 44.5
ATR0019G055 Amborella trichopoda HOM05D005439 ORTHO05D006793 1.3e-15 86.7 121 42.1
arahy.Tifrunner.gnm1.ann1.KJ06EE Arachis hypogaea HOM05D005439 ORTHO05D006793 1.3e-15 86.7 63 63.5
AUR62042910 Chenopodium quinoa HOM05D005439 ORTHO05D006793 1.3e-15 86.7 124 42.7
unitig_32.g11156 Utricularia gibba HOM05D005439 ORTHO05D006793 1.7e-15 86.3 113 42.5
Ciclev10009838m.g Citrus clementina HOM05D005439 ORTHO05D006793 1.1e-14 83.6 89 48.3
Zm00001eb001470 Zea mays HOM05D005439 ORTHO05D006793 1.5e-14 83.2 116 40.5
Mapoly0076s0011 Marchantia polymorpha HOM05D005439 ORTHO05D006793 2.5e-14 82.4 101 42.6
Sed0010430 Sechium edule HOM05D005439 ORTHO05D006793 1.6e-13 79.7 86 50.0
Potri.001G402700 Populus trichocarpa HOM05D005439 ORTHO05D006793 2.1e-13 79.3 73 52.1
Nitab4.5_0010521g0020 Nicotiana tabacum HOM05D005439 ORTHO05D006793 4.7e-13 78.2 107 44.9
Os04g0530000 Oryza sativa ssp. japonica HOM05D005439 ORTHO05D006793 4.7e-13 78.2 108 40.7
RcHm_v2.0_Chr2g0143371 Rosa chinensis HOM05D005439 ORTHO05D006793 4.7e-13 78.2 72 55.6
Zm00001eb403870 Zea mays HOM05D005439 ORTHO05D006793 4.7e-13 78.2 119 38.7
MD11G1243100 Malus domestica HOM05D005439 ORTHO05D006793 4.0e-12 75.1 103 39.8
Gorai.004G187000 Gossypium raimondii HOM05D005439 ORTHO05D006793 6.8e-12 74.3 71 56.3
AagrBONN_evm.TU.Sc2ySwM_369.384 Anthoceros agrestis HOM05D005439 ORTHO05D006793 1.2e-11 73.6 91 44.0
Pp3c23_5480 Physcomitrium patens HOM05D005439 ORTHO05D006793 1.5e-11 73.2 117 35.0
PSO541G3703 Papaver somniferum HOM05D005439 ORTHO05D006793 1.7e-10 69.7 83 47.0
Eucgr.L03232 Eucalyptus grandis HOM05D005439 ORTHO05D006793 3.7e-10 68.6 85 43.5
Phvul.005G083100 Phaseolus vulgaris HOM05D005439 ORTHO05D006793 8.3e-10 67.4 114 34.2
Gohir.D09G236700 Gossypium hirsutum HOM05D005439 ORTHO05D006793 1.1e-09 67.0 81 44.4
QL08p019959 Quercus lobata HOM05D005439 ORTHO05D006793 5.4e-09 64.7 46 65.2
AUR62029363 Chenopodium quinoa HOM05D005439 ORTHO05D006793 3.5e-08 62.0 49 57.1
CsaV3_2G034140 Cucumis sativus L. HOM05D003646 ORTHO05D004503 1.0e-07 60.5 49 63.3
FAN09G1944 Fragaria x ananassa HOM05D005439 ORTHO05D006793 1.0e-07 60.5 45 66.7
Gorai.007G117500 Gossypium raimondii HOM05D005439 ORTHO05D006793 3.0e-07 58.9 81 42.0
SMO293G0007 Selaginella moellendorffii HOM05D005439 ORTHO05D006793 3.9e-07 58.5 73 47.9
FAN02G1859 Fragaria x ananassa HOM05D005439 ORTHO05D006793 5.1e-07 58.2 45 64.4
QL08p019954 Quercus lobata HOM05D005439 ORTHO05D006793 7.3e-06 54.3 80 42.5


User provided reference genes

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