Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36840 Brassica carinata HOM05D004935 ORTHO05D005676 4.5e-119 431.4 242 100.0
BcaC04g18869 Brassica carinata HOM05D004935 ORTHO05D005676 3.0e-86 322.4 243 81.1
BcaC03g18499 Brassica carinata HOM05D004935 ORTHO05D005676 1.1e-85 320.5 243 79.4
BolC9t58894H Brassica oleracea HOM05D004935 ORTHO05D005676 9.6e-85 317.4 244 80.3
C09p60610 Brassica napus HOM05D004935 ORTHO05D005676 1.6e-84 316.6 244 80.3
AT5G16550 Arabidopsis thaliana HOM05D004935 ORTHO05D005676 2.8e-84 315.8 246 76.4
A10p22660 Brassica napus HOM05D004935 ORTHO05D005676 2.8e-84 315.8 227 83.3
BraA10t44327Z Brassica rapa HOM05D004935 ORTHO05D005676 2.8e-84 315.8 227 83.3
AL6G27510 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 1.5e-82 310.1 245 74.7
Carub.0006s1475 Capsella rubella HOM05D004935 ORTHO05D005676 7.1e-80 301.2 244 74.2
A02p03620 Brassica napus HOM05D004935 ORTHO05D005676 2.7e-79 299.3 245 75.1
BraA02t05331Z Brassica rapa HOM05D004935 ORTHO05D005676 3.3e-77 292.4 245 74.3
BolC3t13402H Brassica oleracea HOM05D004935 ORTHO05D005676 3.4e-74 282.3 242 71.5
Sp6g27610 Schrenkiella parvula HOM05D004935 ORTHO05D005676 4.5e-74 282.0 247 72.5
BcaC03g18497 Brassica carinata HOM05D004935 ORTHO05D005676 7.6e-74 281.2 245 71.0
C02p08410 Brassica napus HOM05D004935 ORTHO05D005676 7.6e-74 281.2 245 71.0
BolC2t06759H Brassica oleracea HOM05D004935 ORTHO05D005676 7.6e-74 281.2 245 71.0
C03p09070 Brassica napus HOM05D004935 ORTHO05D005676 3.2e-72 275.8 242 69.8
Thhalv10014473m.g Eutrema salsugineum HOM05D004935 ORTHO05D005676 3.9e-70 268.9 248 69.8
BcaB01g04976 Brassica carinata HOM05D004935 ORTHO05D005676 1.1e-69 267.3 201 78.6
A03p07850 Brassica napus HOM05D004935 ORTHO05D005676 4.5e-66 255.4 245 66.1
BraA03t10111Z Brassica rapa HOM05D000423 ORTHO05D005676 1.3e-57 227.3 243 61.3
THA.LOC104820912 Tarenaya hassleriana HOM05D004935 ORTHO05D005676 2.9e-57 226.1 240 59.2
Aa31LG11G13100 Aethionema arabicum HOM05D004935 ORTHO05D005676 2.8e-52 209.5 226 59.7
Thecc.04G001700 Theobroma cacao HOM05D004935 ORTHO05D005676 2.7e-47 193.0 194 58.2
Duzib138G1863 Durio zibethinus HOM05D004935 ORTHO05D005676 3.6e-47 192.6 206 55.8
Duzib133G0236 Durio zibethinus HOM05D004935 ORTHO05D005676 1.0e-46 191.0 196 56.6
Hma1.2p1_0034F.1_g021280 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 5.1e-46 188.7 225 52.9
Prupe.3G163400 Prunus persica HOM05D004935 ORTHO05D005676 6.7e-46 188.3 191 59.7
Rhsim10G0182800 Rhododendron simsii HOM05D004935 ORTHO05D005676 2.0e-45 186.8 217 54.4
RcHm_v2.0_Chr3g0492651 Rosa chinensis HOM05D004935 ORTHO05D005676 3.3e-45 186.0 208 56.2
FAN28G0886 Fragaria x ananassa HOM05D004935 ORTHO05D005676 4.3e-45 185.7 211 55.5
Manes.02G079800 Manihot esculenta HOM05D004935 ORTHO05D005676 5.7e-45 185.3 190 57.4
vmacro20490 Vaccinium macrocarpon HOM05D004935 ORTHO05D005676 1.3e-44 184.1 198 55.6
Gohir.A07G073800 Gossypium hirsutum HOM05D004935 ORTHO05D005676 2.2e-44 183.3 215 49.8
FvH4_1g28640 Fragaria vesca HOM05D004935 ORTHO05D005676 2.8e-44 183.0 209 56.5
Ciclev10029179m.g Citrus clementina HOM05D004935 ORTHO05D005676 1.8e-43 180.3 199 58.8
CiPaw.03G075500 Carya illinoinensis HOM05D004935 ORTHO05D005676 2.4e-43 179.9 216 53.2
MD09G1265200 Malus domestica HOM05D004935 ORTHO05D005676 2.4e-43 179.9 210 54.8
Manes.01G121800 Manihot esculenta HOM05D004935 ORTHO05D005676 3.1e-43 179.5 197 55.3
QL02p059972 Quercus lobata HOM05D004935 ORTHO05D005676 9.1e-43 177.9 195 56.4
ClCG01G008740 Citrullus lanatus HOM05D004935 ORTHO05D005676 1.2e-42 177.6 210 54.3
Actinidia17180 Actinidia chinensis HOM05D004935 ORTHO05D005676 1.5e-42 177.2 228 49.1
Potri.004G082300 Populus trichocarpa HOM05D004935 ORTHO05D005676 5.9e-42 175.3 217 53.9
Gohir.D07G078500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 1.3e-41 174.1 215 48.4
CSS0027542 Camellia sinensis var. sinensis HOM05D004935 ORTHO05D005676 2.2e-41 173.3 228 51.8
Nitab4.5_0002465g0010 Nicotiana tabacum HOM05D004935 ORTHO05D005676 3.8e-41 172.6 236 45.8
Actinidia01601 Actinidia chinensis HOM05D004935 ORTHO05D005676 8.5e-41 171.4 220 49.5
FAN26G0615 Fragaria x ananassa HOM05D004935 ORTHO05D005676 1.1e-40 171.0 229 51.5
Lj4A255T23 Lonicera japonica HOM05D004935 ORTHO05D005676 1.1e-40 171.0 199 53.3
CiPaw.04G048500 Carya illinoinensis HOM05D004935 ORTHO05D005676 1.4e-40 170.6 196 53.6
Nn4g24526 Nelumbo nucifera HOM05D004935 ORTHO05D005676 1.4e-40 170.6 233 49.8
Nitab4.5_0001088g0190 Nicotiana tabacum HOM05D004935 ORTHO05D005676 1.9e-40 170.2 236 46.2
CANSAT78G0803 Cannabis sativa HOM05D004935 ORTHO05D005676 2.5e-40 169.9 206 52.9
PGSC0003DMG400013258 Solanum tuberosum HOM05D004935 ORTHO05D005676 2.5e-40 169.9 221 48.0
Aqoxy3G04045 Aquilegia oxysepala HOM05D004935 ORTHO05D005676 4.2e-40 169.1 203 51.7
TWI53G1040 Tripterygium wilfordii HOM05D004935 ORTHO05D005676 4.2e-40 169.1 208 52.4
Gorai.001G082900 Gossypium raimondii HOM05D004935 ORTHO05D005676 5.5e-40 168.7 217 47.9
MELO3C025122.2 Cucumis melo HOM05D004935 ORTHO05D005676 9.4e-40 167.9 210 51.4
MSTRG.3688 Avicennia marina HOM05D004935 ORTHO05D005676 1.6e-39 167.2 200 52.0
COL.COLO4_19777 Corchorus olitorius HOM05D004935 ORTHO05D005676 1.6e-39 167.2 210 51.4
CsaV3_5G024270 Cucumis sativus L. HOM05D004935 ORTHO05D005676 3.6e-39 166.0 222 50.5
TPR.G12527 Trifolium pratense HOM05D004935 ORTHO05D005676 3.6e-39 166.0 218 50.9
Migut.K01110 Erythranthe guttata HOM05D004935 ORTHO05D005676 4.7e-39 165.6 208 51.0
Medtr5g091900 Medicago truncatula HOM05D004935 ORTHO05D005676 4.7e-39 165.6 201 52.7
Sabra04G0054800 Salix brachista HOM05D004935 ORTHO05D005676 4.7e-39 165.6 217 52.1
Sopen11g006600 Solanum pennellii HOM05D004935 ORTHO05D005676 7.9e-39 164.9 221 48.0
Eucgr.J01625 Eucalyptus grandis HOM05D004935 ORTHO05D005676 1.0e-38 164.5 195 49.2
Atru.chr1.1949 Acer truncatum HOM05D004935 ORTHO05D005676 1.4e-38 164.1 161 61.5
Solyc11g011760.3 Solanum lycopersicum HOM05D004935 ORTHO05D005676 1.8e-38 163.7 221 47.1
Gohir.A11G169300 Gossypium hirsutum HOM05D004935 ORTHO05D005676 3.0e-38 162.9 207 46.4
arahy.Tifrunner.gnm1.ann1.5XP26J Arachis hypogaea HOM05D004935 ORTHO05D005676 6.7e-38 161.8 197 53.3
Gorai.007G188100 Gossypium raimondii HOM05D004935 ORTHO05D005676 6.7e-38 161.8 188 49.5
Hma1.2p1_0158F.1_g069850 Hydrangea macrophylla HOM05D004935 ORTHO05D005676 6.7e-38 161.8 228 48.2
MD17G1261400 Malus domestica HOM05D004935 ORTHO05D005676 8.8e-38 161.4 210 51.4
Ca_06292_v3 Cicer arietinum L. HOM05D004935 ORTHO05D005676 1.1e-37 161.0 188 54.8
Cfa007772 Carpinus fangiana HOM05D004935 ORTHO05D005676 1.5e-37 160.6 285 43.5
Peaxi162Scf00078g00178 Petunia axillaris HOM05D004935 ORTHO05D005676 1.5e-37 160.6 211 46.9
Dinv19063 Davidia involucrata HOM05D004935 ORTHO05D005676 2.0e-37 160.2 179 56.4
Gohir.D11G175500 Gossypium hirsutum HOM05D004935 ORTHO05D005676 3.3e-37 159.5 188 48.9
Hund13074 Selenicereus undatus HOM05D004935 ORTHO05D005676 1.3e-36 157.5 195 48.2
TAR622G0462 Trochodendron aralioides HOM05D004935 ORTHO05D005676 2.8e-36 156.4 190 51.6
Lj6g0018793 Lotus japonicus HOM05D004935 ORTHO05D005676 3.7e-36 156.0 197 51.3
SalBow3G4475 Salvia bowleyana HOM05D004935 ORTHO05D005676 3.7e-36 156.0 195 49.2
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 4.8e-36 155.6 190 52.6
MBI13_g35399_MAGBIO Magnolia biondii HOM05D004935 ORTHO05D005676 6.3e-36 155.2 199 50.3
Glyma.18G042900 Glycine max HOM05D004935 ORTHO05D005676 1.8e-35 153.7 197 50.8
unitig_748.g8451 Utricularia gibba HOM05D004935 ORTHO05D005676 1.8e-35 153.7 213 46.5
AL92U10070 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 2.4e-35 153.3 167 63.5
PSO170G5471 Papaver somniferum HOM05D004935 ORTHO05D005676 3.1e-35 152.9 207 44.0
Oeu032311.1 Olea europaea HOM05D004935 ORTHO05D005676 4.1e-35 152.5 224 46.9
Oeu029081.1 Olea europaea HOM05D004935 ORTHO05D005676 7.0e-35 151.8 217 48.8
Dinv28224 Davidia involucrata HOM05D004935 ORTHO05D005676 9.1e-35 151.4 230 44.8
PSO407G0171 Papaver somniferum HOM05D004935 ORTHO05D005676 9.1e-35 151.4 206 44.7
Phvul.001G228000 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 1.2e-34 151.0 190 51.1
Actinidia28792 Actinidia chinensis HOM05D004935 ORTHO05D005676 2.0e-34 150.2 194 48.5
Glyma.11G213800 Glycine max HOM05D004935 ORTHO05D005676 2.0e-34 150.2 210 47.6
AL3G36180 Arabidopsis lyrata HOM05D004935 ORTHO05D005676 3.5e-34 149.4 123 75.6
Lj2A514G44 Lonicera japonica HOM05D004935 ORTHO05D005676 7.7e-34 148.3 251 43.0
SGA_v2.0_scaffold45G17134 Striga asiatica HOM05D004935 ORTHO05D005676 1.0e-33 147.9 257 41.2
VMungo1383G0526 Vigna mungo HOM05D004935 ORTHO05D005676 1.7e-33 147.1 198 48.5
PGR042G3611 Punica granatum HOM05D004935 ORTHO05D005676 3.8e-33 146.0 215 46.5
HPP92_017642 Vanilla planifolia HOM05D004935 ORTHO05D005676 3.8e-33 146.0 190 50.5
Lalb_Chr10g0104161 Lupinus albus HOM05D004935 ORTHO05D005676 6.5e-33 145.2 184 53.8
Zm00001eb179280 Zea mays HOM05D004935 ORTHO05D005676 6.5e-33 145.2 186 46.2
Lalb_Chr17g0345951 Lupinus albus HOM05D004935 ORTHO05D005676 3.6e-31 139.4 202 48.0
arahy.Tifrunner.gnm1.ann1.8KIW52 Arachis hypogaea HOM05D004935 ORTHO05D005676 1.8e-30 137.1 187 46.0
Lalb_Chr18g0053611 Lupinus albus HOM05D004935 ORTHO05D005676 1.8e-30 137.1 183 49.7
AL6G14310 Arabidopsis lyrata HOM05D000097 ORTHO05D005676 6.7e-30 135.2 168 60.1
Zm00001eb041900 Zea mays HOM05D004935 ORTHO05D005676 8.8e-30 134.8 218 41.3
arahy.Tifrunner.gnm1.ann1.PKWW5Q Arachis hypogaea HOM05D004935 ORTHO05D005676 1.1e-29 134.4 159 55.3
Cc07_g13020 Coffea canephora HOM05D004935 ORTHO05D005676 1.5e-29 134.0 192 46.9
Glyma.02G242200 Glycine max HOM05D004935 ORTHO05D005676 2.0e-29 133.7 146 55.5
Sc11g0004790 Simmondsia chinensis HOM05D004935 ORTHO05D005676 2.0e-29 133.7 218 45.0
Phvul.008G238800 Phaseolus vulgaris HOM05D004935 ORTHO05D005676 2.6e-29 133.3 191 47.6
LjContig00141g0002036 Lotus japonicus HOM05D004935 ORTHO05D005676 3.3e-29 132.9 190 44.7
CDE11G1189 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 7.5e-29 131.7 200 42.5
CDE05G2820 Ceratophyllum demersum HOM05D004935 ORTHO05D005676 1.7e-28 130.6 192 44.8
TPR.G9990 Trifolium pratense HOM05D004935 ORTHO05D005676 2.2e-28 130.2 191 45.5
Lsat_1_v5_gn_8_111520 Lactuca sativa HOM05D004935 ORTHO05D005676 2.8e-28 129.8 149 51.0
Psat2g044600 Pisum sativum HOM05D004935 ORTHO05D005676 2.8e-28 129.8 206 45.6
Medtr5g077280 Medicago truncatula HOM05D004935 ORTHO05D005676 1.8e-27 127.1 209 45.0
arahy.Tifrunner.gnm1.ann1.63R0A2 Arachis hypogaea HOM05D004935 ORTHO05D005676 1.2e-26 124.4 187 42.8
GSVIVG01026318001 Vitis vinifera HOM05D004935 ORTHO05D005676 1.2e-26 124.4 105 70.5
EL10Ac2g03209 Beta vulgaris HOM05D004935 ORTHO05D005676 5.9e-26 122.1 193 43.5
CARHR196690 Cardamine hirsuta HOM05D004935 ORTHO05D005676 1.1e-24 117.9 115 60.9
VMungo0647G1435 Vigna mungo HOM05D004935 ORTHO05D005676 1.1e-24 117.9 146 52.1
Sc11g0004530 Simmondsia chinensis HOM05D004935 ORTHO05D005676 1.6e-23 114.0 142 52.8
CARHR196680 Cardamine hirsuta HOM05D004935 ORTHO05D005676 8.8e-22 108.2 85 80.0
TAR629G3076 Trochodendron aralioides HOM05D004935 ORTHO05D005676 8.8e-22 108.2 133 50.4
Sed0000771 Sechium edule HOM05D004935 ORTHO05D005676 2.0e-21 107.1 214 37.9
HanXRQChr15g0489811 Helianthus annuus HOM05D004935 ORTHO05D005676 2.6e-21 106.7 177 42.4
ECA246G1322 Erigeron canadensis HOM05D004935 ORTHO05D005676 1.4e-19 100.9 129 49.6
Mapoly0035s0070 Marchantia polymorpha HOM05D004935 ORTHO05D005676 1.6e-18 97.4 207 34.3
AagrBONN_evm.TU.Sc2ySwM_117.2252 Anthoceros agrestis HOM05D004935 ORTHO05D005676 2.0e-18 97.1 173 37.6
Oeu014715.1 Olea europaea HOM05D004935 ORTHO05D005676 3.5e-18 96.3 124 51.6
Haze_14300 Corylus avellana HOM05D004935 ORTHO05D005676 3.8e-17 92.8 269 34.6
DCAR_003418 Daucus carota HOM05D004935 ORTHO05D005676 1.4e-14 84.3 110 49.1
Peaxi162Scf00085g00527 Petunia axillaris HOM05D004935 ORTHO05D005676 8.8e-14 81.6 92 53.3
Medtr5g077270 Medicago truncatula HOM05D007893 ORTHO05D010042 1.3e-12 77.8 81 59.3
Pp3c25_6290 Physcomitrium patens HOM05D004935 ORTHO05D005676 2.2e-12 77.0 147 36.1
Zm00001eb099130 Zea mays HOM05D004935 ORTHO05D005676 2.8e-12 76.6 110 44.5
FAN19G0113 Fragaria x ananassa HOM05D004935 ORTHO05D005676 1.1e-11 74.7 93 47.3
Cpa.g.sc178.1 Carica papaya HOM05D004935 ORTHO05D005676 5.4e-11 72.4 102 45.1
CARHR196670 Cardamine hirsuta HOM05D004935 ORTHO05D005676 2.0e-10 70.5 54 68.5
MSTRG.15645 Avicennia marina HOM05D004935 ORTHO05D005676 8.6e-09 65.1 98 39.8
Pp3c6_9570 Physcomitrium patens HOM05D004935 ORTHO05D005676 1.5e-08 64.3 135 34.1
DCAR_003417 Daucus carota HOM05D004935 ORTHO05D005676 8.0e-07 58.5 105 36.2


User provided reference genes

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