Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 4.0e-63 244.6 122 100.0
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 8.6e-50 200.3 129 82.9
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 1.6e-48 196.1 129 80.6
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 1.6e-48 196.1 129 80.6
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 3.6e-48 194.9 129 81.4
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 2.6e-46 188.7 122 80.3
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 4.1e-44 181.4 123 76.4
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 1.3e-42 176.4 124 75.8
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 1.1e-41 173.3 122 74.6
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 2.5e-41 172.2 115 80.9
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 4.1e-36 154.8 122 69.7
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 2.5e-33 145.6 123 61.0
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 4.3e-33 144.8 125 63.2
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 3.6e-32 141.7 125 61.6
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 2.4e-31 139.0 124 62.1
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 6.8e-31 137.5 126 61.9
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 8.9e-31 137.1 126 57.9
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 2.0e-30 136.0 123 61.0
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 5.8e-30 134.4 120 57.5
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 5.8e-30 134.4 121 58.7
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 5.8e-30 134.4 120 57.5
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 1.3e-29 133.3 122 61.5
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 1.7e-29 132.9 123 57.7
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 1.7e-29 132.9 123 57.7
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 1.7e-29 132.9 120 58.3
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 2.9e-29 132.1 123 57.7
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 3.8e-29 131.7 123 56.9
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 6.4e-29 131.0 123 58.5
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 6.4e-29 131.0 122 58.2
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 1.1e-28 130.2 130 60.0
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 1.9e-28 129.4 124 58.1
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 7.3e-25 117.5 123 51.2
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 1.4e-23 113.2 125 48.8
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 3.1e-23 112.1 98 53.1
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 2.0e-22 109.4 127 48.8
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 9.9e-22 107.1 128 48.4
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 1.7e-21 106.3 123 45.5
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 2.2e-21 105.9 116 47.4
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 4.9e-21 104.8 102 52.9
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.4e-20 103.2 124 47.6
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 1.9e-20 102.8 99 49.5
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 1.9e-20 102.8 99 49.5
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 2.4e-20 102.4 86 54.7
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 2.4e-20 102.4 115 47.0
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 3.2e-20 102.1 99 48.5
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 2.7e-19 99.0 88 53.4
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 3.5e-19 98.6 100 49.0
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 1.0e-18 97.1 98 48.0
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.3e-18 96.7 89 55.1
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.3e-18 96.7 128 43.8
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 2.3e-18 95.9 93 52.7
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 3.9e-18 95.1 135 43.0
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 3.9e-18 95.1 95 46.3
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 5.1e-18 94.7 102 46.1
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 1.1e-17 93.6 93 47.3
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 1.5e-17 93.2 92 48.9
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 1.9e-17 92.8 91 52.7
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 3.3e-17 92.0 93 46.2
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 3.3e-17 92.0 95 48.4
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 4.3e-17 91.7 93 46.2
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 4.3e-17 91.7 93 46.2
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 4.3e-17 91.7 120 45.0
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 7.3e-17 90.9 88 52.3
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 9.6e-17 90.5 89 52.8
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 1.3e-16 90.1 93 46.2
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 1.6e-16 89.7 91 47.3
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 1.6e-16 89.7 84 50.0
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 1.6e-16 89.7 84 50.0
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 2.8e-16 89.0 82 51.2
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.6e-16 88.6 129 43.4
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 3.6e-16 88.6 123 42.3
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 6.2e-16 87.8 125 43.2
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 6.2e-16 87.8 87 51.7
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 6.2e-16 87.8 120 44.2
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 6.2e-16 87.8 96 52.1
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 8.1e-16 87.4 124 43.5
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 1.1e-15 87.0 133 42.9
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 1.1e-15 87.0 89 47.2
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 1.4e-15 86.7 127 41.7
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 1.4e-15 86.7 125 41.6
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 1.8e-15 86.3 89 46.1
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 2.4e-15 85.9 87 49.4
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 3.1e-15 85.5 126 41.3
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 5.3e-15 84.7 95 47.4
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 6.9e-15 84.3 93 50.5
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 6.9e-15 84.3 142 41.5
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 9.0e-15 84.0 128 43.8
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 9.0e-15 84.0 118 40.7
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.2e-14 83.6 91 48.4
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.2e-14 83.6 86 47.7
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.2e-14 83.6 86 47.7
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.2e-14 83.6 86 47.7
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 1.2e-14 83.6 86 47.7
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 1.2e-14 83.6 135 38.5
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.2e-14 83.6 86 50.0
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 1.5e-14 83.2 90 48.9
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.0e-14 82.8 88 50.0
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 2.0e-14 82.8 82 50.0
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 2.0e-14 82.8 98 43.9
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 2.0e-14 82.8 85 49.4
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 2.0e-14 82.8 81 51.9
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 2.6e-14 82.4 118 42.4
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 2.6e-14 82.4 81 49.4
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 2.6e-14 82.4 98 48.0
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 2.6e-14 82.4 85 51.8
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 3.4e-14 82.0 100 45.0
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 3.4e-14 82.0 92 51.1
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 3.4e-14 82.0 119 41.2
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 4.5e-14 81.6 100 45.0
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 4.5e-14 81.6 90 47.8
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 5.8e-14 81.3 134 41.8
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 5.8e-14 81.3 127 40.9
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 5.8e-14 81.3 117 39.3
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 5.8e-14 81.3 86 52.3
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 7.6e-14 80.9 126 41.3
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 9.9e-14 80.5 129 40.3
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 9.9e-14 80.5 129 41.1
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 9.9e-14 80.5 83 49.4
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 9.9e-14 80.5 121 38.8
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 1.3e-13 80.1 97 44.3
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.7e-13 79.7 126 37.3
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 2.2e-13 79.3 87 50.6
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 2.9e-13 79.0 86 48.8
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 2.9e-13 79.0 96 43.8
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 2.9e-13 79.0 90 47.8
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 2.9e-13 79.0 96 44.8
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 2.9e-13 79.0 89 46.1
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 3.8e-13 78.6 88 45.5
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 4.9e-13 78.2 85 48.2
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 4.9e-13 78.2 85 48.2
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 8.4e-13 77.4 99 46.5
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 8.4e-13 77.4 90 45.6
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 8.4e-13 77.4 92 47.8
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 1.1e-12 77.0 102 44.1
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 1.1e-12 77.0 131 38.9
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 1.9e-12 76.3 79 50.6
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.9e-12 76.3 86 47.7
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 1.9e-12 76.3 88 46.6
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 2.4e-12 75.9 94 42.6
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 4.2e-12 75.1 82 50.0
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 5.4e-12 74.7 92 43.5
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 5.4e-12 74.7 87 47.1
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 7.1e-12 74.3 82 45.1
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 1.2e-11 73.6 91 45.1
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.2e-11 73.6 130 36.9
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 2.1e-11 72.8 124 38.7
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 2.7e-11 72.4 97 48.5
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 2.7e-11 72.4 79 53.2
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 3.5e-11 72.0 88 44.3
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 4.6e-11 71.6 87 44.8
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 4.6e-11 71.6 79 53.2
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 4.6e-11 71.6 79 44.3
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 1.0e-10 70.5 86 46.5
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 1.0e-10 70.5 91 50.5
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.0e-10 70.5 117 35.0
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 1.3e-10 70.1 55 56.4
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 1.3e-10 70.1 86 43.0
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.8e-10 69.7 123 41.5
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 1.8e-10 69.7 110 37.3
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.3e-10 69.3 98 48.0
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 3.9e-10 68.6 117 36.8
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 6.7e-10 67.8 96 46.9
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 6.7e-10 67.8 121 40.5
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 8.7e-10 67.4 90 50.0
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 1.1e-09 67.0 83 42.2
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 1.1e-09 67.0 94 42.6
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 1.9e-09 66.2 130 34.6
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 2.5e-09 65.9 81 39.5
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 4.3e-09 65.1 83 44.6
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 7.4e-09 64.3 84 41.7
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 7.4e-09 64.3 82 41.5
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 7.4e-09 64.3 89 42.7
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 7.4e-09 64.3 87 42.5
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.1e-08 62.8 86 44.2
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.4e-07 59.3 41 56.1
SEGI_00089 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 3.1e-07 58.9 79 40.5
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 4.0e-07 58.5 81 34.6
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 4.0e-07 58.5 86 38.4
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 5.3e-07 58.2 82 39.0
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 6.9e-07 57.8 88 36.4
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 1.5e-06 56.6 84 38.1
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 2.0e-06 56.2 113 33.6
Ah.13g071140 Amaranthus hybridus HOM05D003592 ORTHO05D004208 3.4e-06 55.5 99 37.4
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 3.4e-06 55.5 83 41.0
HanXRQChr05g0137871 Helianthus annuus HOM05D003592 ORTHO05D029303 7.6e-06 54.3 116 37.9


User provided reference genes

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