Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36792 Brassica carinata HOM05D007510 ORTHO05D009587 6.9e-69 263.8 132 100.0
BcaC04g18811 Brassica carinata HOM05D007510 ORTHO05D009587 1.9e-50 202.6 133 81.2
C09p59910 Brassica napus HOM05D007510 ORTHO05D009587 4.2e-50 201.4 133 81.2
BolC9t58827H Brassica oleracea HOM05D007510 ORTHO05D009587 4.2e-50 201.4 133 81.2
A10p22120 Brassica napus HOM05D007510 ORTHO05D009587 1.1e-45 186.8 133 77.4
BraA10t44271Z Brassica rapa HOM05D007510 ORTHO05D009587 1.1e-45 186.8 133 77.4
Sp6g26950 Schrenkiella parvula HOM05D007510 ORTHO05D009587 3.4e-44 181.8 132 76.5
Thhalv10014934m.g Eutrema salsugineum HOM05D007510 ORTHO05D009587 5.7e-39 164.5 141 68.8
A02p04090 Brassica napus HOM05D007510 ORTHO05D009587 2.2e-35 152.5 141 64.5
BraA02t05372Z Brassica rapa HOM05D007510 ORTHO05D009587 9.3e-34 147.1 134 63.4
AT5G17280 Arabidopsis thaliana HOM05D007510 ORTHO05D009587 8.7e-32 140.6 128 67.2
BcaC03g18546 Brassica carinata HOM05D007510 ORTHO05D009587 2.5e-31 139.0 136 61.8
Carub.0006s1547 Capsella rubella HOM05D007510 ORTHO05D009587 4.3e-31 138.3 143 61.5
BcaNung00409 Brassica carinata HOM05D007510 ORTHO05D009587 5.3e-29 131.3 138 59.4
Aa31LG1G14840 Aethionema arabicum HOM05D007510 ORTHO05D009587 6.9e-29 131.0 132 58.3
AL6G28360 Arabidopsis lyrata HOM05D007510 ORTHO05D009587 5.9e-28 127.9 124 61.3
C02p08940 Brassica napus HOM05D007510 ORTHO05D009587 1.1e-26 123.6 140 57.1
BolC2t06803H Brassica oleracea HOM05D007510 ORTHO05D009587 1.1e-26 123.6 140 57.1
Aa31LG11G5850 Aethionema arabicum HOM05D007510 ORTHO05D009587 1.9e-26 122.9 129 57.4
Ciclev10026716m.g Citrus clementina HOM05D007510 ORTHO05D009587 1.8e-16 89.7 70 65.7
CARHR195940 Cardamine hirsuta HOM05D007510 ORTHO05D009587 1.1e-15 87.0 101 52.5
CiPaw.04G025800 Carya illinoinensis HOM05D007510 ORTHO05D009587 1.5e-15 86.7 55 67.3
vmacro22104 Vaccinium macrocarpon HOM05D007510 ORTHO05D009587 1.3e-14 83.6 119 43.7
Solyc02g084650.3 Solanum lycopersicum HOM05D007510 ORTHO05D009587 1.7e-14 83.2 85 51.8
Sopen02g029320 Solanum pennellii HOM05D007510 ORTHO05D009587 1.7e-14 83.2 85 51.8
Oeu037725.1 Olea europaea HOM05D007510 ORTHO05D009587 2.2e-14 82.8 103 46.6
HanXRQChr11g0325681 Helianthus annuus HOM05D007510 ORTHO05D009587 2.8e-14 82.4 91 47.3
TPR.G21530 Trifolium pratense HOM05D007510 ORTHO05D009587 2.8e-14 82.4 47 74.5
ClCG01G020060 Citrullus lanatus HOM05D007510 ORTHO05D000703 3.7e-14 82.0 51 68.6
PGSC0003DMG400003618 Solanum tuberosum HOM05D007510 ORTHO05D009587 3.7e-14 82.0 56 67.9
CAN.G358.14 Capsicum annuum HOM05D007510 ORTHO05D009587 4.8e-14 81.6 109 44.0
Nitab4.5_0002266g0030 Nicotiana tabacum HOM05D007510 ORTHO05D009587 4.8e-14 81.6 75 49.3
Oeu037724.1 Olea europaea HOM05D007510 ORTHO05D009587 4.8e-14 81.6 103 45.6
Medtr8g076660 Medicago truncatula HOM05D007510 ORTHO05D009587 6.3e-14 81.3 42 76.2
Sc16g0002400 Simmondsia chinensis HOM05D007510 ORTHO05D009587 6.3e-14 81.3 92 48.9
Actinidia26112 Actinidia chinensis HOM05D007510 ORTHO05D009587 8.2e-14 80.9 122 43.4
CiPaw.08G136300 Carya illinoinensis HOM05D007510 ORTHO05D009587 8.2e-14 80.9 54 68.5
SalBow5G2055 Salvia bowleyana HOM05D007510 ORTHO05D009587 8.2e-14 80.9 150 37.3
CSS0038414 Camellia sinensis var. sinensis HOM05D007510 ORTHO05D009587 1.1e-13 80.5 49 69.4
HanXRQChr15g0494821 Helianthus annuus HOM05D007510 ORTHO05D009587 1.1e-13 80.5 79 51.9
unitig_27.g25318 Utricularia gibba HOM05D007510 ORTHO05D009587 1.1e-13 80.5 42 78.6
VMungo0251G3154 Vigna mungo HOM05D007510 ORTHO05D009587 1.1e-13 80.5 75 48.0
COL.COLO4_21980 Corchorus olitorius HOM05D001094 ORTHO05D001050 3.1e-13 79.0 67 59.7
Lj4g0024164 Lotus japonicus HOM05D007510 ORTHO05D009587 3.1e-13 79.0 46 67.4
MELO3C007880.2 Cucumis melo HOM05D007510 ORTHO05D009587 5.3e-13 78.2 76 51.3
CsaV3_6G046830 Cucumis sativus L. HOM05D007510 ORTHO05D009587 5.3e-13 78.2 72 55.6
FAN28G2971 Fragaria x ananassa HOM05D007510 ORTHO05D009587 5.3e-13 78.2 136 40.4
Nitab4.5_0012525g0020 Nicotiana tabacum HOM05D007510 ORTHO05D009587 5.3e-13 78.2 85 44.7
Lsat_1_v5_gn_4_151140 Lactuca sativa HOM05D007510 ORTHO05D009587 7.0e-13 77.8 69 49.3
arahy.Tifrunner.gnm1.ann1.X6BQPF Arachis hypogaea HOM05D007510 ORTHO05D009587 9.1e-13 77.4 38 78.9
Glyma.02G052200 Glycine max HOM05D007510 ORTHO05D009587 9.1e-13 77.4 117 41.9
ECA232G0818 Erigeron canadensis HOM05D001094 ORTHO05D001050 1.2e-12 77.0 91 46.2
Lalb_Chr05g0229951 Lupinus albus HOM05D007510 ORTHO05D009587 1.2e-12 77.0 73 50.7
Manes.02G175500 Manihot esculenta HOM05D007510 ORTHO05D009587 1.6e-12 76.6 101 46.5
Psat4g096640 Pisum sativum HOM05D007510 ORTHO05D009587 1.6e-12 76.6 56 57.1
Potri.007G017200 Populus trichocarpa HOM05D007510 ORTHO05D009587 1.6e-12 76.6 34 91.2
Ah.02g124790 Amaranthus hybridus HOM05D007510 ORTHO05D009587 2.0e-12 76.3 76 51.3
SHI08591 Sapria himalayana HOM05D007510 ORTHO05D009587 2.6e-12 75.9 66 53.0
AUR62007639 Chenopodium quinoa HOM05D007510 ORTHO05D009587 4.5e-12 75.1 72 55.6
MD02G1136700 Malus domestica HOM05D007510 ORTHO05D000703 5.9e-12 74.7 34 85.3
Hma1.2p1_0266F.1_g107010 Hydrangea macrophylla HOM05D007510 ORTHO05D009587 7.7e-12 74.3 44 68.2
Rhsim08G0036700 Rhododendron simsii HOM05D007510 ORTHO05D009587 7.7e-12 74.3 36 80.6
Migut.H02491 Erythranthe guttata HOM05D007510 ORTHO05D009587 1.3e-11 73.6 104 44.2
SGA_v2.0_scaffold280G46849 Striga asiatica HOM05D007510 ORTHO05D009587 1.3e-11 73.6 36 83.3
Thecc.01G024800 Theobroma cacao HOM05D007510 ORTHO05D009587 1.3e-11 73.6 34 85.3
Atru.chr3.749 Acer truncatum HOM05D007510 ORTHO05D009587 2.2e-11 72.8 35 82.9
Ca_22347_v3 Cicer arietinum L. HOM05D007510 ORTHO05D009587 2.2e-11 72.8 33 84.8
Duzib264G0517 Durio zibethinus HOM05D007510 ORTHO05D009587 2.2e-11 72.8 34 85.3
Prupe.7G163800 Prunus persica HOM05D007510 ORTHO05D000703 2.2e-11 72.8 85 47.1
PGR102G2493 Punica granatum HOM05D007510 ORTHO05D009587 2.2e-11 72.8 96 44.8
CANSAT78G1864 Cannabis sativa HOM05D007510 ORTHO05D009587 2.9e-11 72.4 35 77.1
Gohir.A02G168700 Gossypium hirsutum HOM05D007510 ORTHO05D009587 3.8e-11 72.0 71 53.5
Gohir.D03G011300 Gossypium hirsutum HOM05D007510 ORTHO05D009587 5.0e-11 71.6 71 53.5
Gorai.003G011700 Gossypium raimondii HOM05D007510 ORTHO05D009587 5.0e-11 71.6 71 53.5
TAR625G1319 Trochodendron aralioides HOM05D007510 ORTHO05D009587 5.0e-11 71.6 72 47.2
Haze_03821 Corylus avellana HOM05D007510 ORTHO05D009587 6.5e-11 71.2 127 38.6
Nn6g32199 Nelumbo nucifera HOM05D007510 ORTHO05D009587 8.5e-11 70.9 56 57.1
TWI09G1276 Tripterygium wilfordii HOM05D007510 ORTHO05D009587 1.1e-10 70.5 65 52.3
CANSAT01G2887 Cannabis sativa HOM05D007510 ORTHO05D009587 1.5e-10 70.1 34 76.5
AagrBONN_evm.TU.Sc2ySwM_228.2268 Anthoceros agrestis HOM05D007510 ORTHO05D009587 3.2e-10 68.9 96 42.7
Cpa.g.sc6.200 Carica papaya HOM05D007510 ORTHO05D009587 5.5e-10 68.2 132 38.6
FAN26G1275 Fragaria x ananassa HOM05D007510 ORTHO05D009587 9.4e-10 67.4 140 37.1
QL06p034549 Quercus lobata HOM05D007510 ORTHO05D009587 9.4e-10 67.4 119 38.7
HPP92_022284 Vanilla planifolia HOM05D007510 ORTHO05D009587 9.4e-10 67.4 44 61.4
HPP92_022401 Vanilla planifolia HOM05D007510 ORTHO05D009587 9.4e-10 67.4 44 61.4
EL10As8g23866 Beta vulgaris HOM05D007510 ORTHO05D009587 1.2e-09 67.0 33 75.8
Cfa006928 Carpinus fangiana HOM05D007510 ORTHO05D009587 1.2e-09 67.0 127 34.6
FvH4_1g12420 Fragaria vesca HOM05D000116 ORTHO05D000703 1.2e-09 67.0 140 37.1
Phvul.003G257700 Phaseolus vulgaris HOM05D007510 ORTHO05D009587 1.2e-09 67.0 103 35.0
HPP92_028382 Vanilla planifolia HOM05D007510 ORTHO05D009587 1.2e-09 67.0 44 61.4
Os09g0530900 Oryza sativa ssp. japonica HOM05D007510 ORTHO05D009587 1.6e-09 66.6 31 80.6
Sed0019199 Sechium edule HOM05D007510 ORTHO05D009587 1.6e-09 66.6 31 80.6
Aqoxy1G00866 Aquilegia oxysepala HOM05D007510 ORTHO05D009587 2.1e-09 66.2 28 89.3
Nn5g29177 Nelumbo nucifera HOM05D007510 ORTHO05D009587 2.7e-09 65.9 48 64.6
Sc03g0003350 Simmondsia chinensis HOM05D007510 ORTHO05D009587 2.7e-09 65.9 34 76.5
AagrBONN_evm.TU.Sc2ySwM_368.2258 Anthoceros agrestis HOM05D007510 ORTHO05D009587 8.0e-09 64.3 95 37.9
CDE12G0095 Ceratophyllum demersum HOM05D007510 ORTHO05D009587 8.0e-09 64.3 30 83.3
CDE04G3692 Ceratophyllum demersum HOM05D001179 ORTHO05D002194 1.8e-08 63.2 85 44.7
SEGI_27269 Sequoiadendron giganteum HOM05D007510 ORTHO05D009587 1.8e-08 63.2 31 74.2
ATR0661G079 Amborella trichopoda HOM05D007510 ORTHO05D009587 2.3e-08 62.8 30 73.3
Zm00001eb319510 Zea mays HOM05D007510 ORTHO05D009587 1.5e-07 60.1 27 77.8
Pp3c10_3490 Physcomitrium patens HOM05D007510 ORTHO05D009587 2.0e-07 59.7 64 42.2
Mapoly0025s0056 Marchantia polymorpha HOM05D007510 ORTHO05D009587 3.3e-07 58.9 81 38.3
AL6G28340 Arabidopsis lyrata HOM05D007510 ORTHO05D009587 1.7e-06 56.6 59 52.5
Dinv40044 Davidia involucrata HOM05D007510 ORTHO05D009587 2.8e-06 55.8 91 41.8


User provided reference genes

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