Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 2.2e-227 792.0 403 100.0
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 2.4e-213 745.3 401 94.5
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 2.0e-212 742.3 401 94.0
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 7.6e-212 740.3 401 94.0
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 7.6e-212 740.3 401 94.0
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 4.2e-210 734.6 405 92.8
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 1.4e-202 709.5 414 86.7
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 6.1e-193 677.6 376 92.6
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 1.3e-187 659.8 418 81.6
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 4.2e-186 654.8 405 84.2
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 6.1e-185 651.0 398 84.4
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 6.1e-185 651.0 398 84.4
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 2.3e-184 649.0 418 79.9
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 5.2e-184 647.9 404 83.7
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 8.8e-184 647.1 414 80.2
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 1.8e-176 622.9 360 87.2
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 1.3e-174 616.7 405 79.5
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 5.9e-164 581.3 410 72.4
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 2.2e-158 562.8 413 69.2
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 1.3e-142 510.4 357 71.1
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 1.4e-141 506.9 353 71.7
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 1.3e-139 500.4 354 70.6
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 4.3e-138 495.4 383 66.1
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 7.3e-138 494.6 323 73.4
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 7.3e-138 494.6 330 72.1
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 9.5e-138 494.2 402 64.2
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 9.5e-138 494.2 405 62.7
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 9.5e-138 494.2 370 66.8
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.6e-137 493.4 343 70.8
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 2.8e-137 492.7 401 62.8
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 4.7e-137 491.9 404 62.4
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 1.1e-136 490.7 352 69.9
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.4e-136 490.3 405 62.2
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 1.4e-136 490.3 325 74.5
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 1.8e-136 490.0 327 71.3
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 4.0e-136 488.8 325 74.2
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 4.0e-136 488.8 325 74.2
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 8.9e-136 487.6 349 69.1
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 1.5e-135 486.9 327 72.8
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 2.0e-135 486.5 351 68.4
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 2.6e-135 486.1 327 72.5
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 2.6e-135 486.1 327 71.9
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 3.4e-135 485.7 330 71.5
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 2.2e-134 483.0 349 67.9
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 2.9e-134 482.6 403 61.5
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 3.7e-134 482.3 319 73.4
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 6.4e-134 481.5 316 73.7
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 8.3e-134 481.1 386 64.0
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 2.4e-133 479.6 327 71.9
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 5.4e-133 478.4 402 60.7
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 7.1e-133 478.0 327 70.9
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 9.2e-133 477.6 372 65.9
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 6.0e-132 474.9 319 71.8
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 6.0e-132 474.9 346 67.3
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 6.0e-132 474.9 340 68.2
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 1.0e-131 474.2 399 60.9
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 1.7e-131 473.4 327 69.1
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 2.3e-131 473.0 354 66.1
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 3.9e-131 472.2 315 73.0
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 5.1e-131 471.9 351 66.1
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 1.9e-130 469.9 335 66.9
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 4.3e-130 468.8 336 68.5
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 7.3e-130 468.0 345 67.2
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 9.5e-130 467.6 345 67.2
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 1.2e-129 467.2 329 68.1
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 1.6e-129 466.8 345 64.9
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 1.6e-129 466.8 345 67.2
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 8.1e-129 464.5 327 70.3
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 3.1e-128 462.6 263 87.1
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 3.1e-128 462.6 318 68.9
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 5.2e-128 461.8 318 71.1
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.5e-127 460.3 316 70.3
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 1.5e-127 460.3 315 69.5
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 1.5e-127 460.3 314 71.0
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 5.8e-127 458.4 353 62.6
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 9.9e-127 457.6 406 56.2
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 9.9e-127 457.6 325 67.1
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 1.3e-126 457.2 406 56.4
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 1.7e-126 456.8 396 59.3
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 2.2e-126 456.4 316 68.7
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 2.9e-126 456.1 353 62.3
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 2.9e-126 456.1 353 62.3
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 8.4e-126 454.5 353 62.0
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 2.4e-125 453.0 315 68.6
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 3.5e-124 449.1 363 59.8
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 4.6e-124 448.7 393 58.0
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 6.0e-124 448.4 312 71.2
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 6.0e-124 448.4 351 61.8
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 1.7e-123 446.8 315 68.6
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 2.3e-123 446.4 331 65.0
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 3.9e-123 445.7 336 62.5
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 8.6e-123 444.5 340 62.6
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 1.5e-122 443.7 388 58.2
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 4.4e-119 432.2 372 57.5
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 2.7e-116 422.9 316 67.1
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 6.0e-116 421.8 405 55.6
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 1.1e-114 417.5 336 62.2
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 3.3e-114 416.0 340 60.6
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 5.6e-114 415.2 425 52.2
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 3.1e-112 409.5 351 62.4
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 3.4e-111 406.0 268 73.1
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 7.1e-109 398.3 330 62.4
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 1.6e-108 397.1 268 70.1
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 7.9e-108 394.8 274 72.3
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 5.6e-106 388.7 282 66.0
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 1.4e-104 384.0 316 60.1
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 5.3e-104 382.1 285 67.7
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 5.3e-104 382.1 332 62.0
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 1.5e-103 380.6 291 65.6
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 2.3e-99 366.7 298 62.1
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 7.4e-98 361.7 250 72.0
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.6e-97 360.5 349 52.7
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 1.2e-92 344.4 370 50.5
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 3.9e-91 339.3 316 53.2
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.1e-90 337.8 321 53.3
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 3.3e-90 336.3 341 54.8
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 1.8e-88 330.5 332 52.1
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 7.9e-84 315.1 216 72.7
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 1.0e-78 298.1 234 70.1
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 1.7e-78 297.4 220 60.9
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 7.9e-76 288.5 240 60.0
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 1.4e-75 287.7 267 56.2
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 1.3e-73 281.2 207 65.2
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 3.6e-68 263.1 171 70.8
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 1.4e-67 261.2 264 56.8
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 2.3e-67 260.4 209 64.6
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 5.7e-66 255.8 224 59.8
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 2.6e-63 246.9 173 71.7
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 3.6e-60 236.5 243 51.4
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 9.7e-58 228.4 119 86.6
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 2.1e-52 210.7 224 53.1
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 9.2e-40 168.7 315 32.4
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 1.6e-39 167.9 303 34.7
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 5.6e-37 159.5 149 51.0
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 4.0e-35 153.3 93 74.2
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 9.2e-32 142.1 312 32.7
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 2.1e-28 131.0 84 72.6
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 6.0e-23 112.8 98 49.0
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 3.4e-18 97.1 95 47.4
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 8.3e-17 92.4 81 67.9
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 6.2e-12 76.3 189 28.6
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 1.1e-11 75.5 131 39.7


User provided reference genes

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