Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36763 Brassica carinata HOM05D004155 ORTHO05D004837 6.1e-135 484.2 249 100.0
C09p59610 Brassica napus HOM05D004155 ORTHO05D004837 6.5e-129 464.2 249 96.4
BcaC04g18780 Brassica carinata HOM05D004155 ORTHO05D004837 7.2e-128 460.7 249 95.6
BolC9t58800H Brassica oleracea HOM05D004155 ORTHO05D004837 9.4e-128 460.3 255 94.9
A10p21850 Brassica napus HOM05D004155 ORTHO05D004837 1.6e-127 459.5 249 96.0
BraA10t44245Z Brassica rapa HOM05D004155 ORTHO05D004837 2.7e-127 458.8 249 95.6
Thhalv10014511m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 1.3e-124 449.9 249 94.0
Sp6g26670 Schrenkiella parvula HOM05D004155 ORTHO05D004837 3.7e-124 448.4 249 94.0
AL6G28640 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 1.0e-121 440.3 249 92.4
AT5G17550 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 1.3e-121 439.9 249 92.4
Carub.0006s1579 Capsella rubella HOM05D004155 ORTHO05D004837 3.0e-118 428.7 249 90.4
CARHR195630 Cardamine hirsuta HOM05D004155 ORTHO05D004837 3.7e-116 421.8 247 89.9
Aa31LG11G12130 Aethionema arabicum HOM05D004155 ORTHO05D004837 2.8e-108 395.6 249 83.1
Sp3g02480 Schrenkiella parvula HOM05D004155 ORTHO05D004837 2.7e-106 389.0 248 82.7
CARHR077510 Cardamine hirsuta HOM05D004155 ORTHO05D004837 1.7e-105 386.3 252 79.8
THA.LOC104802903 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 4.3e-104 381.7 250 81.2
AL3G13170 Arabidopsis lyrata HOM05D004155 ORTHO05D004837 1.2e-103 380.2 249 79.5
Aa31LG5G14010 Aethionema arabicum HOM05D004155 ORTHO05D004837 1.6e-103 379.8 249 80.7
BraA03t12501Z Brassica rapa HOM05D004155 ORTHO05D004837 4.7e-103 378.3 251 80.5
Carub.0003s0263 Capsella rubella HOM05D004155 ORTHO05D004837 1.0e-102 377.1 250 80.4
AT3G03490 Arabidopsis thaliana HOM05D004155 ORTHO05D004837 8.9e-102 374.0 253 78.7
THA.LOC104820827 Tarenaya hassleriana HOM05D004155 ORTHO05D004837 4.4e-101 371.7 249 78.7
BcaC01g04400 Brassica carinata HOM05D004155 ORTHO05D004837 5.7e-101 371.3 249 79.1
C03p40540 Brassica napus HOM05D004155 ORTHO05D004837 5.7e-101 371.3 249 79.1
BolC3t16319H Brassica oleracea HOM05D004155 ORTHO05D004837 5.7e-101 371.3 249 79.1
A03p33290 Brassica napus HOM05D004155 ORTHO05D004837 4.9e-100 368.2 249 78.3
BcaB04g19367 Brassica carinata HOM05D004155 ORTHO05D004837 8.3e-100 367.5 249 78.3
Gohir.A08G170500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 1.9e-91 339.7 248 70.6
Gohir.D08G188700 Gossypium hirsutum HOM05D004155 ORTHO05D004837 4.1e-91 338.6 248 70.2
Thecc.03G251400 Theobroma cacao HOM05D004155 ORTHO05D004837 4.1e-91 338.6 248 71.8
Gorai.004G198700 Gossypium raimondii HOM05D004155 ORTHO05D004837 1.2e-90 337.0 248 69.8
Duzib068G1244 Durio zibethinus HOM05D004155 ORTHO05D004837 2.7e-90 335.9 247 69.6
Aqoxy5G03883 Aquilegia oxysepala HOM05D004155 ORTHO05D004837 2.3e-89 332.8 248 68.5
MD06G1058700 Malus domestica HOM05D004155 ORTHO05D004837 3.0e-89 332.4 248 70.6
Duzib136G0003 Durio zibethinus HOM05D004155 ORTHO05D004837 5.0e-89 331.6 248 69.0
Potri.003G077000 Populus trichocarpa HOM05D004155 ORTHO05D004837 5.0e-89 331.6 253 68.8
Atru.chr9.1312 Acer truncatum HOM05D004155 ORTHO05D004837 8.6e-89 330.9 252 68.3
Hma1.2p1_0316F.1_g123160 Hydrangea macrophylla HOM05D004155 ORTHO05D004837 3.3e-88 328.9 249 69.1
Prupe.5G069700 Prunus persica HOM05D004155 ORTHO05D004837 5.6e-88 328.2 245 69.8
GSVIVG01001328001 Vitis vinifera HOM05D004155 ORTHO05D004837 5.6e-88 328.2 247 69.2
Gohir.D12G219500 Gossypium hirsutum HOM05D004155 ORTHO05D004837 7.3e-88 327.8 247 67.2
COL.COLO4_37174 Corchorus olitorius HOM05D004155 ORTHO05D004837 1.2e-87 327.0 266 66.5
Gohir.A12G217000 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.1e-87 326.2 247 66.8
Haze_07913 Corylus avellana HOM05D004155 ORTHO05D004837 2.8e-87 325.9 250 68.0
CsaV3_3G002720 Cucumis sativus L. HOM05D004155 ORTHO05D004837 3.6e-87 325.5 244 68.4
Gorai.008G235200 Gossypium raimondii HOM05D004155 ORTHO05D004837 3.6e-87 325.5 247 66.8
Manes.01G080600 Manihot esculenta HOM05D004155 ORTHO05D004837 8.1e-87 324.3 251 67.3
Ca_21966_v3 Cicer arietinum L. HOM05D004155 ORTHO05D004837 1.1e-86 323.9 245 67.8
MELO3C013940.2 Cucumis melo HOM05D004155 ORTHO05D004837 1.1e-86 323.9 246 67.9
Cfa012719 Carpinus fangiana HOM05D004155 ORTHO05D004837 1.8e-86 323.2 248 67.7
TWI81G0233 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 1.8e-86 323.2 254 68.5
QL12p012142 Quercus lobata HOM05D004155 ORTHO05D004837 6.8e-86 321.2 244 68.0
ClCG10G002690 Citrullus lanatus HOM05D004155 ORTHO05D004837 8.9e-86 320.9 245 67.3
Ciclev10021960m.g Citrus clementina HOM05D004155 ORTHO05D004837 8.9e-86 320.9 245 67.8
CiPaw.12G052800 Carya illinoinensis HOM05D004155 ORTHO05D004837 1.5e-85 320.1 252 67.1
TWI60G0516 Tripterygium wilfordii HOM05D004155 ORTHO05D004837 2.6e-85 319.3 254 68.5
TAR374G0168 Trochodendron aralioides HOM05D004155 ORTHO05D004837 3.4e-85 318.9 247 67.6
TAR374G0401 Trochodendron aralioides HOM05D004155 ORTHO05D004837 3.4e-85 318.9 244 67.2
Manes.02G039600 Manihot esculenta HOM05D004155 ORTHO05D004837 4.4e-85 318.5 249 65.9
Actinidia22301 Actinidia chinensis HOM05D004155 ORTHO05D004837 9.9e-85 317.4 245 67.3
Medtr4g100930 Medicago truncatula HOM05D004155 ORTHO05D004837 1.7e-84 316.6 251 64.9
Glyma.05G059400 Glycine max HOM05D004155 ORTHO05D004837 2.2e-84 316.2 243 67.1
Glyma.17G141800 Glycine max HOM05D004155 ORTHO05D004837 2.9e-84 315.8 244 66.8
Lj2A217G31 Lonicera japonica HOM05D004155 ORTHO05D004837 2.9e-84 315.8 245 65.7
Sed0004864 Sechium edule HOM05D004155 ORTHO05D004837 8.3e-84 314.3 246 67.1
Phvul.003G220600 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 1.1e-83 313.9 249 66.7
Potri.001G157900 Populus trichocarpa HOM05D004155 ORTHO05D004837 1.9e-83 313.2 255 64.7
CSS0005110 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 3.2e-83 312.4 244 67.2
CSS0021878 Camellia sinensis var. sinensis HOM05D004155 ORTHO05D004837 3.2e-83 312.4 244 67.2
Lj4g0023659 Lotus japonicus HOM05D004155 ORTHO05D004837 3.2e-83 312.4 252 64.7
CANSAT21G0249 Cannabis sativa HOM05D004155 ORTHO05D004837 2.1e-82 309.7 250 63.2
Cc08_g12420 Coffea canephora HOM05D004155 ORTHO05D004837 2.1e-82 309.7 244 64.8
Duzib084G0799 Durio zibethinus HOM05D004155 ORTHO05D004837 2.1e-82 309.7 248 66.5
Eucgr.I02746 Eucalyptus grandis HOM05D004155 ORTHO05D004837 2.1e-82 309.7 255 63.9
VMungo0251G3701 Vigna mungo HOM05D004155 ORTHO05D004837 2.1e-82 309.7 247 65.6
Nn6g33959 Nelumbo nucifera HOM05D004155 ORTHO05D004837 4.6e-82 308.5 249 64.7
Sc01g0008440 Simmondsia chinensis HOM05D004155 ORTHO05D004837 6.0e-82 308.1 253 65.6
Sopen06g020840 Solanum pennellii HOM05D004155 ORTHO05D004837 7.8e-82 307.8 253 64.4
PGSC0003DMG400011880 Solanum tuberosum HOM05D004155 ORTHO05D004837 1.3e-81 307.0 255 64.3
TPR.G11991 Trifolium pratense HOM05D004155 ORTHO05D004837 1.3e-81 307.0 248 64.9
DCAR_006831 Daucus carota HOM05D004155 ORTHO05D004837 1.7e-81 306.6 247 64.0
Solyc06g060720.3 Solanum lycopersicum HOM05D004155 ORTHO05D004837 2.3e-81 306.2 253 64.0
Lalb_Chr16g0386681 Lupinus albus HOM05D004155 ORTHO05D004837 6.6e-81 304.7 255 63.9
EL10Ac9g21736 Beta vulgaris HOM05D004155 ORTHO05D004837 1.5e-80 303.5 252 61.9
Oeu026407.1 Olea europaea HOM05D004155 ORTHO05D004837 1.5e-80 303.5 251 63.3
Psat4g072240 Pisum sativum HOM05D004155 ORTHO05D004837 1.9e-80 303.1 251 63.7
FvH4_5g18890 Fragaria vesca HOM05D004155 ORTHO05D004837 4.3e-80 302.0 247 65.2
FAN08G3385 Fragaria x ananassa HOM05D004155 ORTHO05D004837 4.3e-80 302.0 247 65.6
CAN.G1058.24 Capsicum annuum HOM05D004155 ORTHO05D004837 5.6e-80 301.6 253 64.0
FAN18G2873 Fragaria x ananassa HOM05D004155 ORTHO05D004837 5.6e-80 301.6 247 65.2
FAN18G3217 Fragaria x ananassa HOM05D004155 ORTHO05D004837 5.6e-80 301.6 247 65.2
FAN18G4261 Fragaria x ananassa HOM05D004155 ORTHO05D004837 5.6e-80 301.6 247 65.2
Lalb_Chr09g0330111 Lupinus albus HOM05D004155 ORTHO05D004837 5.6e-80 301.6 251 64.5
RcHm_v2.0_Chr7g0203271 Rosa chinensis HOM05D004155 ORTHO05D004837 7.3e-80 301.2 246 65.0
PSO782G0374 Papaver somniferum HOM05D004155 ORTHO05D004837 2.1e-79 299.7 255 63.9
PGR142G3296 Punica granatum HOM05D004155 ORTHO05D004837 2.1e-79 299.7 246 63.4
FAN04G2128 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.8e-79 299.3 247 65.2
PSO063G2044 Papaver somniferum HOM05D004155 ORTHO05D004837 3.6e-79 298.9 251 63.7
FAN13G1725 Fragaria x ananassa HOM05D004155 ORTHO05D004837 2.4e-78 296.2 246 64.6
Nitab4.5_0005960g0040 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.4e-78 296.2 256 63.7
PGSC0003DMG400004812 Solanum tuberosum HOM05D004155 ORTHO05D004837 6.8e-78 294.7 256 62.5
MSTRG.25524 Avicennia marina HOM05D004155 ORTHO05D004837 2.0e-77 293.1 255 62.4
Sabra03G0047400 Salix brachista HOM05D004155 ORTHO05D004837 7.6e-77 291.2 313 54.3
Oeu040215.1 Olea europaea HOM05D004155 ORTHO05D004837 1.7e-76 290.0 239 65.3
CAN.G62.43 Capsicum annuum HOM05D004155 ORTHO05D004837 3.8e-76 288.9 251 62.2
SGA_v2.0_scaffold146G36157 Striga asiatica HOM05D004155 ORTHO05D004837 4.9e-76 288.5 252 62.3
arahy.Tifrunner.gnm1.ann1.FN76PE Arachis hypogaea HOM05D004155 ORTHO05D004837 6.4e-76 288.1 249 63.9
MSTRG.12099 Avicennia marina HOM05D004155 ORTHO05D004837 6.4e-76 288.1 252 62.7
DCAR_008491 Daucus carota HOM05D004155 ORTHO05D004837 8.4e-76 287.7 246 60.6
TAR375G0135 Trochodendron aralioides HOM05D004155 ORTHO05D004837 1.1e-75 287.3 229 63.8
arahy.Tifrunner.gnm1.ann1.9Q5ZL0 Arachis hypogaea HOM05D004155 ORTHO05D004837 3.2e-75 285.8 244 65.2
Dinv21638 Davidia involucrata HOM05D004155 ORTHO05D004837 4.1e-75 285.4 223 65.0
HanXRQChr06g0164361 Helianthus annuus HOM05D004155 ORTHO05D004837 1.6e-74 283.5 253 60.9
Ah.11g040940 Amaranthus hybridus HOM05D004155 ORTHO05D004837 6.0e-74 281.6 239 63.2
HanXRQChr03g0088551 Helianthus annuus HOM05D004155 ORTHO05D004837 6.0e-74 281.6 232 64.7
Ah.11g040960 Amaranthus hybridus HOM05D004155 ORTHO05D004837 7.8e-74 281.2 239 63.2
Lsat_1_v5_gn_6_91040 Lactuca sativa HOM05D004155 ORTHO05D004837 5.1e-73 278.5 241 60.2
SGA_v2.0_scaffold120G32880 Striga asiatica HOM05D004155 ORTHO05D004837 5.1e-73 278.5 238 61.8
Migut.A00944 Erythranthe guttata HOM05D004155 ORTHO05D004837 2.8e-71 272.7 238 61.3
Sabra01G0133600 Salix brachista HOM05D004155 ORTHO05D004837 3.6e-71 272.3 321 50.2
MBI04_g09499_MAGBIO Magnolia biondii HOM05D004155 ORTHO05D004837 1.1e-70 270.8 267 56.9
ECA240G3289 Erigeron canadensis HOM05D004155 ORTHO05D004837 2.4e-70 269.6 254 58.3
SalBow5G4949 Salvia bowleyana HOM05D004155 ORTHO05D004837 3.1e-70 269.2 253 59.7
Nitab4.5_0000312g0050 Nicotiana tabacum HOM05D004155 ORTHO05D004837 2.6e-69 266.2 215 64.2
Nitab4.5_0001076g0090 Nicotiana tabacum HOM05D004155 ORTHO05D004837 1.3e-68 263.8 207 64.7
AUR62016725 Chenopodium quinoa HOM05D004155 ORTHO05D004837 6.4e-68 261.5 254 57.9
Nitab4.5_0000618g0060 Nicotiana tabacum HOM05D004155 ORTHO05D004837 8.4e-68 261.2 218 61.9
Ah.11g040910 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.9e-67 260.0 235 60.4
Peaxi162Scf00174g00143 Petunia axillaris HOM05D004155 ORTHO05D004837 2.4e-67 259.6 229 61.6
unitig_37.g12342 Utricularia gibba HOM05D004155 ORTHO05D004837 5.1e-65 251.9 246 54.5
HPP92_007424 Vanilla planifolia HOM05D004155 ORTHO05D004837 1.5e-64 250.4 257 51.4
Rhsim02G0215900 Rhododendron simsii HOM05D004155 ORTHO05D004837 3.6e-63 245.7 316 46.8
CDE11G1226 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 1.1e-62 244.2 245 53.1
CDE09G1113 Ceratophyllum demersum HOM05D004155 ORTHO05D004837 6.9e-62 241.5 248 53.2
ATR0317G023 Amborella trichopoda HOM05D004155 ORTHO05D004837 2.0e-61 240.0 240 55.4
Ah.11g040970 Amaranthus hybridus HOM05D004155 ORTHO05D004837 1.2e-58 230.7 233 54.9
Phvul.003G220550 Phaseolus vulgaris HOM05D004155 ORTHO05D004837 1.6e-55 220.3 150 70.0
Nn1g00995 Nelumbo nucifera HOM05D004155 ORTHO05D004837 2.1e-55 219.9 239 52.7
Zm00001eb249680 Zea mays HOM05D004155 ORTHO05D004837 2.8e-55 219.5 244 49.6
Os02g0661000 Oryza sativa ssp. japonica HOM05D004155 ORTHO05D004837 6.2e-55 218.4 253 49.0
Actinidia13193 Actinidia chinensis HOM05D004155 ORTHO05D004837 9.0e-54 214.5 139 74.1
vmacro11263 Vaccinium macrocarpon HOM05D004155 ORTHO05D004837 2.9e-52 209.5 136 72.8
Gorai.003G171500 Gossypium raimondii HOM05D004155 ORTHO05D004837 9.3e-51 204.5 215 53.0
Gohir.D03G162900 Gossypium hirsutum HOM05D004155 ORTHO05D004837 2.7e-50 203.0 169 62.1
Gohir.A03G008100 Gossypium hirsutum HOM05D004155 ORTHO05D004837 3.9e-49 199.1 169 60.9
Zm00001eb186660 Zea mays HOM05D004155 ORTHO05D004837 1.1e-48 197.6 244 47.1
Pp3c2_16800 Physcomitrium patens HOM05D004155 ORTHO05D004837 2.0e-45 186.8 268 44.0
Mapoly0045s0092 Marchantia polymorpha HOM05D004155 ORTHO05D004837 2.2e-44 183.3 289 40.8
Cpa.g.sc43.156 Carica papaya HOM05D004155 ORTHO05D004837 7.1e-43 178.3 121 71.9
TPR.G37592 Trifolium pratense HOM05D004155 ORTHO05D004837 3.3e-40 169.5 117 70.9
Ah.11g040930 Amaranthus hybridus HOM05D004155 ORTHO05D004837 4.3e-40 169.1 203 50.7
Thhalv10015034m.g Eutrema salsugineum HOM05D004155 ORTHO05D004837 2.9e-36 156.4 95 86.3
Cpa.g.sc43.157 Carica papaya HOM05D004155 ORTHO05D004837 6.5e-36 155.2 144 66.0
CBR_g22421 Chara braunii HOM05D004155 ORTHO05D004837 7.4e-32 141.7 280 36.8
AagrBONN_evm.TU.Sc2ySwM_228.1233 Anthoceros agrestis HOM05D004155 ORTHO05D004837 5.3e-30 135.6 267 35.6
Actinidia14427 Actinidia chinensis HOM05D004155 ORTHO05D004837 7.9e-26 121.7 127 54.3
SMO340G0179 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 4.4e-24 115.9 88 60.2
SMO146G0254 Selaginella moellendorffii HOM05D004155 ORTHO05D004837 9.7e-24 114.8 95 58.9
TPR.G37609 Trifolium pratense HOM05D004155 ORTHO05D004837 1.3e-23 114.4 103 61.2
CAN.G1058.18 Capsicum annuum HOM05D002401 ORTHO05D007109 9.4e-19 98.2 69 65.2
PRCOL_00005614 Prasinoderma coloniale HOM05D004155 ORTHO05D004837 3.9e-17 92.8 110 37.3
PSO384G2334 Papaver somniferum HOM05D004155 ORTHO05D004837 1.1e-16 91.3 121 49.6
Cre02.g119000 Chlamydomonas reinhardtii HOM05D004155 ORTHO05D004837 2.6e-16 90.1 93 47.3
arahy.Tifrunner.gnm1.ann1.Z2VGSW Arachis hypogaea HOM05D004155 ORTHO05D004837 5.7e-16 89.0 79 60.8
arahy.Tifrunner.gnm1.ann1.BEL5CJ Arachis hypogaea HOM05D004155 ORTHO05D004837 2.4e-14 83.6 79 57.0
SEGI_17945 Sequoiadendron giganteum HOM05D004155 ORTHO05D004837 1.6e-10 70.9 137 40.9
Pp3c1_22650 Physcomitrium patens HOM05D004155 ORTHO05D004837 1.0e-09 68.2 81 44.4
ECA247G1153 Erigeron canadensis HOM05D004155 ORTHO05D004837 1.8e-09 67.4 97 49.5
PGSC0003DMG400045666 Solanum tuberosum HOM05D004155 ORTHO05D004837 3.0e-09 66.6 126 40.5
Cfa022446 Carpinus fangiana HOM05D004155 ORTHO05D126510 5.7e-08 62.4 152 28.9


User provided reference genes

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