Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36761 Brassica carinata HOM05D004773 ORTHO05D005943 7.6e-186 653.7 328 100.0
Sp6g26650 Schrenkiella parvula HOM05D004773 ORTHO05D005943 2.7e-167 592.0 328 90.9
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 1.7e-164 582.8 327 90.5
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 3.7e-164 581.6 327 90.2
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 3.7e-164 581.6 327 90.2
AL6G28660 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 2.4e-163 578.9 328 88.4
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 9.1e-163 577.0 327 90.8
Thhalv10014121m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 3.7e-156 555.1 329 87.2
AT5G17570 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 2.1e-151 539.3 309 87.4
Carub.0006s1581 Capsella rubella HOM05D004773 ORTHO05D005943 8.0e-151 537.3 308 87.3
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 4.0e-134 481.9 314 78.3
Aa31LG11G12090 Aethionema arabicum HOM05D004773 ORTHO05D005943 6.4e-132 474.6 310 79.4
Ciclev10032178m.g Citrus clementina HOM05D004773 ORTHO05D005943 5.6e-128 461.5 313 73.2
CARHR195610 Cardamine hirsuta HOM05D004773 ORTHO05D005943 3.1e-126 455.7 265 87.2
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 4.4e-125 451.8 312 71.8
QL09p005927 Quercus lobata HOM05D004773 ORTHO05D005943 4.9e-124 448.4 313 71.2
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 1.9e-123 446.4 306 72.2
CiPaw.05G210200 Carya illinoinensis HOM05D004773 ORTHO05D005943 1.9e-123 446.4 310 71.6
Duzib128G1941 Durio zibethinus HOM05D004773 ORTHO05D005943 5.4e-123 444.9 312 71.5
Cfa016123 Carpinus fangiana HOM05D004773 ORTHO05D005943 2.7e-122 442.6 313 70.6
Atru.chr2.1725 Acer truncatum HOM05D004773 ORTHO05D005943 7.8e-122 441.0 311 70.4
Haze_00339 Corylus avellana HOM05D004773 ORTHO05D005943 3.0e-121 439.1 310 69.7
Gohir.D11G235500 Gossypium hirsutum HOM05D004773 ORTHO05D005943 8.6e-121 437.6 307 68.7
Lj2g0008141 Lotus japonicus HOM05D004773 ORTHO05D005943 8.6e-121 437.6 309 72.5
Gorai.007G248200 Gossypium raimondii HOM05D004773 ORTHO05D005943 1.5e-120 436.8 307 68.7
MD15G1141100 Malus domestica HOM05D004773 ORTHO05D005943 1.5e-120 436.8 300 72.0
arahy.Tifrunner.gnm1.ann1.WJU3K5 Arachis hypogaea HOM05D004773 ORTHO05D005943 2.5e-120 436.0 309 69.9
Manes.08G158200 Manihot esculenta HOM05D004773 ORTHO05D005943 3.3e-120 435.6 310 69.7
Psat1g096800 Pisum sativum HOM05D004773 ORTHO05D005943 5.6e-120 434.9 306 71.2
Medtr6g033025 Medicago truncatula HOM05D004773 ORTHO05D005943 1.2e-119 433.7 309 69.3
Hund21271 Selenicereus undatus HOM05D004773 ORTHO05D005943 1.2e-119 433.7 308 69.2
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 3.6e-119 432.2 308 69.8
Ca_04503_v3 Cicer arietinum L. HOM05D004773 ORTHO05D005943 6.2e-119 431.4 311 70.1
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.1e-118 430.6 311 68.8
TWI32G1059 Tripterygium wilfordii HOM05D004773 ORTHO05D005943 1.1e-118 430.6 311 69.8
Lalb_Chr06g0173871 Lupinus albus HOM05D004773 ORTHO05D005943 1.8e-118 429.9 307 69.7
Actinidia11804 Actinidia chinensis HOM05D004773 ORTHO05D005943 6.8e-118 427.9 309 68.6
vmacro15870 Vaccinium macrocarpon HOM05D004773 ORTHO05D005943 4.4e-117 425.2 306 68.6
Lj1P1212T41 Lonicera japonica HOM05D004773 ORTHO05D005943 9.8e-117 424.1 306 68.3
CsaV3_3G010040 Cucumis sativus L. HOM05D004773 ORTHO05D005943 1.3e-116 423.7 305 69.8
Rhsim02G0120400 Rhododendron simsii HOM05D000873 ORTHO05D002948 3.7e-116 422.2 309 68.0
MELO3C006226.2 Cucumis melo HOM05D004773 ORTHO05D005943 1.1e-115 420.6 305 69.5
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 2.4e-115 419.5 302 69.9
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 7.1e-115 417.9 305 68.9
Aqoxy5G04203 Aquilegia oxysepala HOM05D004773 ORTHO05D005943 9.2e-115 417.5 300 68.3
Sed0007971 Sechium edule HOM05D004773 ORTHO05D005943 4.6e-114 415.2 304 68.4
MBI04_g12483_MAGBIO Magnolia biondii HOM05D004773 ORTHO05D005943 6.0e-114 414.8 310 66.5
Nn2g15176 Nelumbo nucifera HOM05D004773 ORTHO05D005943 1.0e-113 414.1 310 65.8
Hma1.2p1_0144F.1_g064840 Hydrangea macrophylla HOM05D004773 ORTHO05D005943 6.6e-113 411.4 309 66.7
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 6.6e-113 411.4 314 65.9
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 1.1e-112 410.6 306 65.7
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 1.1e-112 410.6 309 66.0
ECA234G3816 Erigeron canadensis HOM05D004773 ORTHO05D005943 1.5e-112 410.2 306 67.3
Prupe.7G272000 Prunus persica HOM05D004773 ORTHO05D005943 3.3e-112 409.1 301 69.4
Nitab4.5_0003676g0020 Nicotiana tabacum HOM05D004773 ORTHO05D005943 4.3e-112 408.7 338 61.2
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 4.3e-112 408.7 309 65.4
Solyc02g078980.3 Solanum lycopersicum HOM05D004773 ORTHO05D005943 4.3e-112 408.7 309 65.7
Cc02_g12570 Coffea canephora HOM05D004773 ORTHO05D005943 1.6e-111 406.8 304 66.1
Nitab4.5_0005399g0010 Nicotiana tabacum HOM05D004773 ORTHO05D005943 6.2e-111 404.8 334 61.1
Sopen02g023790 Solanum pennellii HOM05D004773 ORTHO05D005943 2.3e-110 402.9 307 65.1
PGSC0003DMG400022363 Solanum tuberosum HOM05D004773 ORTHO05D005943 5.2e-110 401.7 309 65.0
ClCG05G002600 Citrullus lanatus HOM05D004773 ORTHO05D005943 6.8e-110 401.4 353 60.6
ATR0620G003 Amborella trichopoda HOM05D004773 ORTHO05D005943 2.0e-109 399.8 306 63.7
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 2.9e-108 396.0 312 62.5
CANSAT01G2664 Cannabis sativa HOM05D004773 ORTHO05D005943 4.9e-108 395.2 302 65.9
HanXRQChr17g0555701 Helianthus annuus HOM05D004773 ORTHO05D005943 4.9e-108 395.2 306 63.7
CDE07G0301 Ceratophyllum demersum HOM05D004773 ORTHO05D005943 6.4e-108 394.8 308 63.6
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 3.2e-107 392.5 306 64.7
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 4.1e-107 392.1 306 64.4
PSO063G3794 Papaver somniferum HOM05D004773 ORTHO05D005943 7.1e-107 391.3 309 64.7
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 9.2e-107 391.0 307 63.2
CAN.G1181.18 Capsicum annuum HOM05D004773 ORTHO05D005943 2.1e-106 389.8 307 63.8
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 2.1e-106 389.8 309 64.1
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 3.5e-106 389.0 305 64.9
Lsat_1_v5_gn_4_57340 Lactuca sativa HOM05D004773 ORTHO05D005943 6.0e-106 388.3 307 62.5
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 2.3e-105 386.3 292 66.4
Glyma.16G151100 Glycine max HOM05D004773 ORTHO05D005943 3.0e-105 386.0 287 67.6
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 3.0e-105 386.0 305 62.6
PGR102G2546 Punica granatum HOM05D004773 ORTHO05D005943 1.2e-103 380.6 300 64.3
Phvul.004G078000 Phaseolus vulgaris HOM05D004773 ORTHO05D005943 8.1e-103 377.9 273 68.9
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.4e-102 377.1 302 65.6
arahy.Tifrunner.gnm1.ann1.KNV4WG Arachis hypogaea HOM05D004773 ORTHO05D005943 5.2e-102 375.2 309 62.1
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.2e-102 375.2 302 65.2
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 8.9e-102 374.4 302 65.6
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 1.2e-101 374.0 302 65.2
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.0e-101 373.2 302 65.9
Carub.0003s0264 Capsella rubella HOM05D004773 ORTHO05D005943 3.4e-101 372.5 309 61.8
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.4e-101 372.1 301 65.1
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.4e-101 372.1 301 65.1
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.8e-101 371.7 302 64.9
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.8e-101 371.7 302 64.9
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 7.6e-101 371.3 302 65.2
AL3G12620 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.3e-100 370.5 306 62.4
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 4.9e-100 368.6 305 60.0
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 4.9e-100 368.6 305 60.7
Eucgr.F01964 Eucalyptus grandis HOM05D004773 ORTHO05D005943 6.4e-100 368.2 310 61.0
Gohir.A11G222000 Gossypium hirsutum HOM05D004773 ORTHO05D005943 2.4e-99 366.3 231 74.9
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 3.2e-99 365.9 306 59.8
Aa31LG5G14030 Aethionema arabicum HOM05D004773 ORTHO05D005943 5.4e-99 365.2 309 59.9
ECA234G0571 Erigeron canadensis HOM05D000140 ORTHO05D000087 5.4e-99 365.2 305 60.0
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 3.5e-98 362.5 310 59.7
A06p26410 Brassica napus HOM05D004773 ORTHO05D005943 1.7e-97 360.1 306 58.8
BNapus_Darmor_BZH_scaffold_78p00160 Brassica napus HOM05D004773 ORTHO05D005943 1.7e-97 360.1 306 58.8
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 8.7e-97 357.8 301 64.1
HPP92_001439 Vanilla planifolia HOM05D004773 ORTHO05D005943 1.5e-96 357.1 308 58.4
BNapus_Darmor_BZH_scaffold_162p00180 Brassica napus HOM05D004773 ORTHO05D005943 2.5e-96 356.3 307 58.6
BolC1t05828H Brassica oleracea HOM05D004773 ORTHO05D005943 2.5e-96 356.3 307 58.6
BraA01t04577Z Brassica rapa HOM05D004773 ORTHO05D005943 5.6e-96 355.1 308 58.4
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 1.3e-95 354.0 308 57.1
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 4.0e-94 349.0 309 56.3
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 6.9e-94 348.2 306 57.5
AUR62014585 Chenopodium quinoa HOM05D004773 ORTHO05D005943 5.8e-93 345.1 309 58.9
AUR62012595 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.9e-92 342.8 231 70.1
TPR.G6097 Trifolium pratense HOM05D004773 ORTHO05D005943 2.9e-92 342.8 309 59.9
SHI39094 Sapria himalayana HOM05D004773 ORTHO05D005943 1.1e-91 340.9 350 50.6
Gohir.A13G158600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.7e-89 333.6 308 53.9
Gohir.D13G163600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 5.1e-89 332.0 308 53.2
Pp3c12_11300 Physcomitrium patens HOM05D004773 ORTHO05D005943 5.6e-88 328.6 311 52.1
BcaC09g47749 Brassica carinata HOM05D004773 ORTHO05D005943 1.8e-86 323.6 319 52.7
SMO367G0365 Selaginella moellendorffii HOM05D004773 ORTHO05D005943 1.5e-85 320.5 305 52.1
Gorai.013G199600 Gossypium raimondii HOM05D004773 ORTHO05D005943 3.4e-85 319.3 308 51.9
PSO063G1994 Papaver somniferum HOM05D004773 ORTHO05D005943 8.4e-84 314.7 307 52.1
AagrBONN_evm.TU.Sc2ySwM_362.2127 Anthoceros agrestis HOM05D004773 ORTHO05D005943 4.6e-82 308.9 323 49.2
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.3e-81 306.6 206 73.8
Mapoly0004s0110 Marchantia polymorpha HOM05D004773 ORTHO05D005943 8.7e-81 304.7 310 50.3
CBR_g32162 Chara braunii HOM05D004773 ORTHO05D001111 1.5e-80 303.9 311 51.8
Dinv40507 Davidia involucrata HOM05D004773 ORTHO05D005943 5.6e-80 302.0 306 55.9
AT3G03500 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 1.1e-78 297.7 196 70.9
PSO782G1422 Papaver somniferum HOM05D004773 ORTHO05D005943 5.3e-78 295.4 182 75.8
Thhalv10021316m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 1.9e-75 287.0 259 57.5
AUR62014597 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.4e-70 270.8 223 60.5
unitig_37.g12340 Utricularia gibba HOM05D004773 ORTHO05D005943 6.9e-54 215.3 149 65.8
VMungo0464G1467 Vigna mungo HOM05D004773 ORTHO05D005943 2.6e-53 213.4 170 60.0
Sp3g02490 Schrenkiella parvula HOM05D004773 ORTHO05D005943 1.7e-52 210.7 344 40.7
VMungo0464G0773 Vigna mungo HOM05D004773 ORTHO05D005943 1.2e-50 204.5 167 67.1
COL.COLO4_31150 Corchorus olitorius HOM05D004773 ORTHO05D005943 2.1e-50 203.8 144 63.2
COL.COLO4_31152 Corchorus olitorius HOM05D007715 ORTHO05D009760 1.1e-46 191.4 203 53.2
RcHm_v2.0_Chr3g0466941 Rosa chinensis HOM05D004773 ORTHO05D005943 1.6e-37 161.0 157 58.0
CAN.G1247.2 Capsicum annuum HOM05D004773 ORTHO05D005943 1.8e-33 147.5 246 37.0
SEGI_00738 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 8.0e-26 122.1 135 54.1
PRCOL_00005876 Prasinoderma coloniale HOM05D004773 ORTHO05D005943 1.5e-24 117.9 234 35.5
HPP92_010162 Vanilla planifolia HOM05D004773 ORTHO05D005943 7.5e-24 115.5 77 62.3
MCO10G115 Micromonas commoda HOM05D004773 ORTHO05D005943 1.8e-22 110.9 229 30.1
Cre17.g717200 Chlamydomonas reinhardtii HOM05D004773 ORTHO05D005943 2.4e-22 110.5 279 29.4
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 2.3e-17 94.0 222 28.4
Nn2g15177 Nelumbo nucifera HOM05D004773 ORTHO05D005943 2.3e-17 94.0 103 53.4
AL6G10940 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 5.7e-16 89.4 71 57.7
TPR.G35071 Trifolium pratense HOM05D004773 ORTHO05D005943 7.5e-16 89.0 52 78.8
AUR62014598 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.8e-14 84.3 91 53.8
Glyma.16G150900 Glycine max HOM05D004773 ORTHO05D005943 2.0e-13 80.9 91 53.8
PGSC0003DMG400004239 Solanum tuberosum HOM05D004773 ORTHO05D005943 1.7e-12 77.8 51 60.8
AL3G13200 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.9e-11 74.3 49 65.3
Pp3c8_2710 Physcomitrium patens HOM05D004773 ORTHO05D005943 1.2e-08 65.1 94 34.0
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 2.6e-08 63.9 253 28.1
SEGI_31644 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 7.5e-08 62.4 48 56.2
Thecc.05G106400 Theobroma cacao HOM05D005131 ORTHO05D006645 1.7e-07 61.2 298 24.8
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 2.2e-07 60.8 169 30.2
Nitab4.5_0012238g0010 Nicotiana tabacum HOM05D005131 ORTHO05D006645 3.7e-07 60.1 225 27.6
Thhalv10010578m.g Eutrema salsugineum HOM05D005131 ORTHO05D006645 1.1e-06 58.5 306 23.9
Glyma.09G113200 Glycine max HOM05D004773 ORTHO05D005943 4.1e-06 56.6 50 46.0
AL3G12640 Arabidopsis lyrata HOM05D006461 ORTHO05D008199 5.4e-06 56.2 57 52.6
AL5G33050 Arabidopsis lyrata HOM05D005131 ORTHO05D006645 5.4e-06 56.2 306 23.9
Nitab4.5_0000121g0080 Nicotiana tabacum HOM05D005131 ORTHO05D006645 5.4e-06 56.2 215 27.4
Duzib128G0735 Durio zibethinus HOM05D005131 ORTHO05D006645 7.0e-06 55.8 299 24.4
AL3G12680 Arabidopsis lyrata HOM05D000403 ORTHO05D000350 9.2e-06 55.5 39 69.2
AT3G52390 Arabidopsis thaliana HOM05D005131 ORTHO05D006645 9.2e-06 55.5 306 23.2


User provided reference genes

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