Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36753 Brassica carinata HOM05D006927 ORTHO05D009065 2.9e-85 318.5 161 100.0
Sp6g26550 Schrenkiella parvula HOM05D006927 ORTHO05D009065 1.2e-35 153.7 110 71.8
Thhalv10014137m.g Eutrema salsugineum HOM05D006927 ORTHO05D009065 1.6e-35 153.3 110 72.7
Carub.0006s1591 Capsella rubella HOM05D006927 ORTHO05D009065 6.0e-35 151.4 110 70.9
BcaC03g13532 Brassica carinata HOM05D006927 ORTHO05D009065 8.7e-34 147.5 111 71.2
Aa31LG11G11960 Aethionema arabicum HOM05D006927 ORTHO05D009065 9.7e-33 144.1 109 66.1
AL6G28760 Arabidopsis lyrata HOM05D006927 ORTHO05D009065 2.8e-32 142.5 111 67.6
C02p09230 Brassica napus HOM05D006927 ORTHO05D009065 3.7e-32 142.1 108 71.3
A02p04400 Brassica napus HOM05D006927 ORTHO05D009065 1.2e-30 137.1 108 69.4
CARHR195510 Cardamine hirsuta HOM05D006927 ORTHO05D009065 1.3e-29 133.7 110 67.3
AT5G17670 Arabidopsis thaliana HOM05D006927 ORTHO05D009065 2.9e-29 132.5 109 67.0
THA.LOC104820815 Tarenaya hassleriana HOM05D006927 ORTHO05D009065 1.1e-28 130.6 136 53.7
Os02g0129900 Oryza sativa ssp. japonica HOM05D006927 ORTHO05D009065 3.9e-26 122.1 136 50.0
CsaV3_6G006390 Cucumis sativus L. HOM05D006927 ORTHO05D009065 1.2e-22 110.5 108 52.8
Duzib177G0162 Durio zibethinus HOM05D006927 ORTHO05D009065 1.2e-22 110.5 107 54.2
QL04p053394 Quercus lobata HOM05D006927 ORTHO05D009065 1.2e-22 110.5 107 56.1
Zm00001eb208940 Zea mays HOM05D006927 ORTHO05D009065 1.2e-22 110.5 108 51.9
HanXRQChr01g0018481 Helianthus annuus HOM05D006927 ORTHO05D009065 1.5e-22 110.2 136 43.4
RcHm_v2.0_Chr1g0340711 Rosa chinensis HOM05D006927 ORTHO05D009065 2.0e-22 109.8 134 47.0
Thecc.05G234500 Theobroma cacao HOM05D006927 ORTHO05D009065 2.0e-22 109.8 134 47.8
Migut.B01420 Erythranthe guttata HOM05D006927 ORTHO05D009065 4.5e-22 108.6 138 47.1
Rhsim07G0047700 Rhododendron simsii HOM05D006927 ORTHO05D009065 4.5e-22 108.6 137 47.4
ATR0568G108 Amborella trichopoda HOM05D006927 ORTHO05D009065 5.9e-22 108.2 135 44.4
FAN03G0521 Fragaria x ananassa HOM05D006927 ORTHO05D009065 5.9e-22 108.2 134 46.3
FAN10G1940 Fragaria x ananassa HOM05D006927 ORTHO05D009065 5.9e-22 108.2 134 45.5
Prupe.2G106800 Prunus persica HOM05D006927 ORTHO05D009065 5.9e-22 108.2 134 47.0
FvH4_7g08340 Fragaria vesca HOM05D006927 ORTHO05D009065 1.0e-21 107.5 134 46.3
PGR083G0610 Punica granatum HOM05D006927 ORTHO05D009065 1.0e-21 107.5 107 53.3
GSVIVG01019324001 Vitis vinifera HOM05D006927 ORTHO05D009065 1.0e-21 107.5 134 45.5
MELO3C022480.2 Cucumis melo HOM05D006927 ORTHO05D009065 1.7e-21 106.7 108 50.9
SGA_v2.0_scaffold98G29375 Striga asiatica HOM05D006927 ORTHO05D009065 1.7e-21 106.7 135 45.2
DCAR_001906 Daucus carota HOM05D006927 ORTHO05D009065 3.8e-21 105.5 109 51.4
Eucgr.D01080 Eucalyptus grandis HOM05D006927 ORTHO05D009065 3.8e-21 105.5 134 44.8
Gorai.007G250200 Gossypium raimondii HOM05D006927 ORTHO05D009065 3.8e-21 105.5 107 50.5
TWI34G1327 Tripterygium wilfordii HOM05D006927 ORTHO05D009065 5.0e-21 105.1 110 51.8
Cpa.g.sc73.27 Carica papaya HOM05D006927 ORTHO05D009065 6.5e-21 104.8 135 43.7
FAN06G3009 Fragaria x ananassa HOM05D006927 ORTHO05D009065 6.5e-21 104.8 104 53.8
MD07G1081500 Malus domestica HOM05D006927 ORTHO05D009065 6.5e-21 104.8 135 45.9
Manes.09G133500 Manihot esculenta HOM05D006927 ORTHO05D009065 6.5e-21 104.8 135 43.7
TPR.G38566 Trifolium pratense HOM05D006927 ORTHO05D009065 6.5e-21 104.8 134 46.3
HPP92_025548 Vanilla planifolia HOM05D006927 ORTHO05D009065 8.5e-21 104.4 135 43.0
CSS0031880 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 1.1e-20 104.0 136 44.9
CSS0044270 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 1.1e-20 104.0 136 44.9
Ca_15418_v3 Cicer arietinum L. HOM05D006927 ORTHO05D009065 1.1e-20 104.0 134 44.0
Lsat_1_v5_gn_1_89341 Lactuca sativa HOM05D006927 ORTHO05D009065 1.1e-20 104.0 136 42.6
Potri.013G070700 Populus trichocarpa HOM05D006927 ORTHO05D009065 1.1e-20 104.0 135 42.2
Medtr3g118320 Medicago truncatula HOM05D006927 ORTHO05D009065 1.4e-20 103.6 107 52.3
SalBow5G1207 Salvia bowleyana HOM05D006927 ORTHO05D009065 1.4e-20 103.6 136 41.2
Sc11g0005590 Simmondsia chinensis HOM05D006927 ORTHO05D009065 1.9e-20 103.2 141 44.7
Sabra13G0061600 Salix brachista HOM05D006927 ORTHO05D009065 3.2e-20 102.4 136 43.4
ClCG06G000620 Citrullus lanatus HOM05D006927 ORTHO05D009065 4.2e-20 102.1 108 49.1
Haze_15787 Corylus avellana HOM05D006927 ORTHO05D009065 4.2e-20 102.1 134 44.0
Glyma.06G001500 Glycine max HOM05D006927 ORTHO05D009065 4.2e-20 102.1 138 45.7
TAR629G3441 Trochodendron aralioides HOM05D006927 ORTHO05D009065 7.2e-20 101.3 133 43.6
arahy.Tifrunner.gnm1.ann1.A7PVHI Arachis hypogaea HOM05D006927 ORTHO05D009065 9.4e-20 100.9 135 43.0
Ciclev10032190m.g Citrus clementina HOM05D006927 ORTHO05D009065 9.4e-20 100.9 135 45.9
Gohir.A11G224222 Gossypium hirsutum HOM05D006927 ORTHO05D009065 9.4e-20 100.9 107 49.5
Aqoxy1G00986 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 1.2e-19 100.5 120 45.8
Dinv43961 Davidia involucrata HOM05D006927 ORTHO05D009065 1.2e-19 100.5 134 44.0
Sed0018978 Sechium edule HOM05D006927 ORTHO05D009065 1.2e-19 100.5 108 48.1
Peaxi162Scf00907g00025 Petunia axillaris HOM05D006927 ORTHO05D009065 1.6e-19 100.1 109 48.6
VMungo0251G3349 Vigna mungo HOM05D006927 ORTHO05D009065 1.6e-19 100.1 107 46.7
arahy.Tifrunner.gnm1.ann1.DTN3WJ Arachis hypogaea HOM05D006927 ORTHO05D009065 2.1e-19 99.8 135 40.7
ECA248G1152 Erigeron canadensis HOM05D006927 ORTHO05D009065 2.1e-19 99.8 136 41.2
Lj1g0006598 Lotus japonicus HOM05D006927 ORTHO05D009065 2.7e-19 99.4 134 40.3
PGSC0003DMG400031110 Solanum tuberosum HOM05D006927 ORTHO05D009065 3.6e-19 99.0 136 39.7
Ah.16g104050 Amaranthus hybridus HOM05D006927 ORTHO05D009065 6.1e-19 98.2 107 51.4
AagrBONN_evm.TU.Sc2ySwM_228.4179 Anthoceros agrestis HOM05D006927 ORTHO05D009065 7.9e-19 97.8 114 44.7
Nitab4.5_0000792g0130 Nicotiana tabacum HOM05D006927 ORTHO05D009065 7.9e-19 97.8 109 46.8
unitig_26.g8846 Utricularia gibba HOM05D006927 ORTHO05D009065 7.9e-19 97.8 55 78.2
Actinidia31733 Actinidia chinensis HOM05D006927 ORTHO05D009065 1.0e-18 97.4 134 43.3
Nitab4.5_0006785g0060 Nicotiana tabacum HOM05D006927 ORTHO05D009065 1.0e-18 97.4 109 46.8
Solyc01g081480.3 Solanum lycopersicum HOM05D006927 ORTHO05D009065 1.0e-18 97.4 109 45.0
CAN.G992.25 Capsicum annuum HOM05D006927 ORTHO05D009065 1.4e-18 97.1 136 40.4
COL.COLO4_21417 Corchorus olitorius HOM05D006927 ORTHO05D009065 1.4e-18 97.1 109 50.5
Lj9A617T58 Lonicera japonica HOM05D006927 ORTHO05D009065 1.8e-18 96.7 108 50.0
MBI04_g06278_MAGBIO Magnolia biondii HOM05D006927 ORTHO05D009065 2.3e-18 96.3 134 41.8
Sopen01g033040 Solanum pennellii HOM05D006927 ORTHO05D009065 8.8e-18 94.4 136 39.0
Cc02_g26470 Coffea canephora HOM05D006927 ORTHO05D009065 1.5e-17 93.6 136 41.9
Pp3c20_10810 Physcomitrium patens HOM05D006927 ORTHO05D009065 1.5e-17 93.6 117 46.2
CDE02G0279 Ceratophyllum demersum HOM05D006927 ORTHO05D009065 2.0e-17 93.2 134 40.3
PSO675G5316 Papaver somniferum HOM05D006927 ORTHO05D009065 2.0e-17 93.2 119 42.9
Phvul.002G317100 Phaseolus vulgaris HOM05D006927 ORTHO05D009065 2.0e-17 93.2 139 39.6
CANSAT25G2771 Cannabis sativa HOM05D006927 ORTHO05D009065 2.6e-17 92.8 64 65.6
Mapoly0110s0034 Marchantia polymorpha HOM05D006927 ORTHO05D009065 5.7e-17 91.7 111 45.9
Atru.chr2.1634 Acer truncatum HOM05D006927 ORTHO05D009065 1.3e-16 90.5 160 37.5
Lalb_Chr08g0246751 Lupinus albus HOM05D006927 ORTHO05D009065 2.2e-16 89.7 107 43.0
MD02G1231900 Malus domestica HOM05D006927 ORTHO05D009065 2.8e-16 89.4 134 41.0
SMO141G0137 Selaginella moellendorffii HOM05D006927 ORTHO05D009065 6.9e-15 84.7 55 63.6
SEGI_38351 Sequoiadendron giganteum HOM05D006927 ORTHO05D009065 9.1e-15 84.3 64 59.4
FAN01G0804 Fragaria x ananassa HOM05D006927 ORTHO05D009065 1.3e-13 80.5 94 47.9
vmacro13598 Vaccinium macrocarpon HOM05D006927 ORTHO05D009065 1.3e-13 80.5 152 36.2
C09p59490 Brassica napus HOM05D000005 ORTHO05D040849 2.9e-13 79.3 73 61.6
Thecc.05G234900 Theobroma cacao HOM05D006927 ORTHO05D009065 4.2e-12 75.5 40 82.5
Aqoxy116s007 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 5.2e-10 68.6 98 40.8
Cre07.g313550 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D009065 4.4e-09 65.5 54 51.9
MCO09G674 Micromonas commoda HOM05D006927 ORTHO05D009065 9.7e-09 64.3 115 31.3
PRCOL_00002784 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 2.8e-08 62.8 63 49.2


User provided reference genes

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