Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36735 Brassica carinata HOM05D006906 ORTHO05D008578 1.1e-54 216.5 111 100.0
C09p59250 Brassica napus HOM05D006906 ORTHO05D008578 1.9e-51 205.7 111 92.8
BolC9t58765H Brassica oleracea HOM05D006906 ORTHO05D008578 2.4e-51 205.3 111 93.7
BcaC04g18752 Brassica carinata HOM05D006906 ORTHO05D008578 2.7e-50 201.8 111 92.8
A10p21600 Brassica napus HOM05D006906 ORTHO05D008578 3.5e-50 201.4 111 92.8
BraA10t44222Z Brassica rapa HOM05D006906 ORTHO05D008578 7.8e-50 200.3 111 91.9
Thhalv10015071m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 1.0e-49 199.9 109 92.7
Sp6g26380 Schrenkiella parvula HOM05D006906 ORTHO05D008578 2.1e-47 192.2 114 91.2
BcaB01g05160 Brassica carinata HOM05D006906 ORTHO05D008578 4.7e-47 191.0 115 88.7
BolC3t13482H Brassica oleracea HOM05D006906 ORTHO05D008578 4.7e-47 191.0 115 88.7
CARHR195300 Cardamine hirsuta HOM05D006906 ORTHO05D008578 1.4e-46 189.5 109 87.2
AL6G28970 Arabidopsis lyrata HOM05D006906 ORTHO05D008578 2.4e-46 188.7 109 89.0
BcaB01g04920 Brassica carinata HOM05D006906 ORTHO05D008578 2.4e-46 188.7 115 87.0
C03p09940 Brassica napus HOM05D006906 ORTHO05D008578 2.4e-46 188.7 113 88.5
BraA03t10177Z Brassica rapa HOM05D006906 ORTHO05D008578 3.1e-46 188.3 114 87.7
A02p04550 Brassica napus HOM05D006906 ORTHO05D008578 3.4e-45 184.9 106 86.8
Carub.0006s1610 Capsella rubella HOM05D006906 ORTHO05D008578 3.4e-45 184.9 110 88.2
AT5G17870 Arabidopsis thaliana HOM05D006906 ORTHO05D008578 5.8e-45 184.1 109 87.2
BraA02t05416Z Brassica rapa HOM05D006906 ORTHO05D008578 2.2e-44 182.2 106 86.8
BcaC03g13555 Brassica carinata HOM05D006906 ORTHO05D008578 8.4e-44 180.3 111 85.6
BolC2t06848H Brassica oleracea HOM05D006906 ORTHO05D008578 3.2e-43 178.3 111 83.8
BcaC04g18751 Brassica carinata HOM05D006906 ORTHO05D008578 5.1e-41 171.0 111 85.6
C09p59230 Brassica napus HOM05D006906 ORTHO05D008578 5.1e-41 171.0 111 85.6
BolC9t58763H Brassica oleracea HOM05D006906 ORTHO05D008578 2.9e-36 155.2 92 88.0
Aa31LG11G11710 Aethionema arabicum HOM05D006906 ORTHO05D008578 5.1e-33 144.4 107 72.9
A03p08530 Brassica napus HOM05D006906 ORTHO05D008578 2.8e-31 138.7 115 70.4
BcaB05g23287 Brassica carinata HOM05D006906 ORTHO05D008578 2.1e-26 122.5 111 66.7
THA.LOC104806946 Tarenaya hassleriana HOM05D006906 ORTHO05D008578 1.8e-25 119.4 106 61.3
Manes.18G052450 Manihot esculenta HOM05D006906 ORTHO05D008578 1.5e-24 116.3 114 57.0
CSS0004987 Camellia sinensis var. sinensis HOM05D006906 ORTHO05D008578 4.3e-24 114.8 99 61.6
Potri.002G112500 Populus trichocarpa HOM05D006906 ORTHO05D008578 7.4e-24 114.0 98 61.2
Prupe.1G543500 Prunus persica HOM05D006906 ORTHO05D008578 1.6e-23 112.8 109 56.0
Cfa020715 Carpinus fangiana HOM05D006906 ORTHO05D008578 4.8e-23 111.3 101 60.4
Thhalv10009816m.g Eutrema salsugineum HOM05D006906 ORTHO05D008578 6.2e-23 110.9 73 76.7
Rhsim07G0215600 Rhododendron simsii HOM05D006906 ORTHO05D008578 1.1e-22 110.2 106 58.5
Actinidia19594 Actinidia chinensis HOM05D006906 ORTHO05D008578 1.4e-22 109.8 92 60.9
Haze_19024 Corylus avellana HOM05D006906 ORTHO05D008578 1.4e-22 109.8 106 54.7
MD08G1211600 Malus domestica HOM05D006906 ORTHO05D008578 1.4e-22 109.8 113 56.6
Sabra02G0088700 Salix brachista HOM05D006906 ORTHO05D008578 1.4e-22 109.8 117 55.6
Ah.05g166860 Amaranthus hybridus HOM05D006906 ORTHO05D008578 1.8e-22 109.4 109 56.0
EL10Ac1g02326 Beta vulgaris HOM05D006906 ORTHO05D008578 1.8e-22 109.4 91 62.6
Dinv01221 Davidia involucrata HOM05D006906 ORTHO05D008578 5.3e-22 107.8 108 57.4
TAR628G1359 Trochodendron aralioides HOM05D006906 ORTHO05D008578 5.3e-22 107.8 105 50.5
CANSAT01G2303 Cannabis sativa HOM05D006906 ORTHO05D008578 6.9e-22 107.5 106 59.4
CiPaw.15G153800 Carya illinoinensis HOM05D006906 ORTHO05D008578 9.0e-22 107.1 105 55.2
RcHm_v2.0_Chr7g0232161 Rosa chinensis HOM05D006906 ORTHO05D008578 9.0e-22 107.1 88 64.8
Hma1.2p1_1068F.1_g254010 Hydrangea macrophylla HOM05D006906 ORTHO05D008578 1.2e-21 106.7 107 57.0
TWI56G0746 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 3.4e-21 105.1 79 64.6
vmacro04612 Vaccinium macrocarpon HOM05D006906 ORTHO05D008578 3.4e-21 105.1 115 50.4
MD15G1394500 Malus domestica HOM05D006906 ORTHO05D008578 5.8e-21 104.4 113 54.0
Eucgr.F00111 Eucalyptus grandis HOM05D006906 ORTHO05D008578 7.6e-21 104.0 86 60.5
SGA_v2.0_scaffold152G36871 Striga asiatica HOM05D006906 ORTHO05D008578 7.6e-21 104.0 105 55.2
QL12p040639 Quercus lobata HOM05D006906 ORTHO05D008578 1.3e-20 103.2 121 51.2
Aqoxy6G01513 Aquilegia oxysepala HOM05D006906 ORTHO05D008578 1.7e-20 102.8 107 55.1
Sc26g0004280 Simmondsia chinensis HOM05D006906 ORTHO05D008578 1.7e-20 102.8 94 60.6
AUR62034964 Chenopodium quinoa HOM05D006906 ORTHO05D008578 3.8e-20 101.7 91 54.9
Atru.chr13.910 Acer truncatum HOM05D006906 ORTHO05D008578 4.9e-20 101.3 105 52.4
ClCG11G014950 Citrullus lanatus HOM05D006906 ORTHO05D008578 6.5e-20 100.9 98 55.1
Duzib116G0588 Durio zibethinus HOM05D006906 ORTHO05D008578 6.5e-20 100.9 74 63.5
HanXRQChr16g0510751 Helianthus annuus HOM05D006906 ORTHO05D008578 6.5e-20 100.9 83 60.2
HanXRQChr16g0510761 Helianthus annuus HOM05D006906 ORTHO05D008578 6.5e-20 100.9 83 60.2
Cpa.g.sc160.12 Carica papaya HOM05D006906 ORTHO05D008578 8.4e-20 100.5 103 54.4
Sed0015154 Sechium edule HOM05D006906 ORTHO05D008578 8.4e-20 100.5 99 53.5
Ciclev10002778m.g Citrus clementina HOM05D006906 ORTHO05D008578 1.1e-19 100.1 111 53.2
FvH4_5g33440 Fragaria vesca HOM05D006906 ORTHO05D008578 1.1e-19 100.1 70 71.4
FAN08G0950 Fragaria x ananassa HOM05D006906 ORTHO05D008578 1.1e-19 100.1 70 71.4
FAN18G0347 Fragaria x ananassa HOM05D006906 ORTHO05D008578 1.1e-19 100.1 70 71.4
PGR031G1810 Punica granatum HOM05D006906 ORTHO05D008578 1.1e-19 100.1 98 57.1
Thecc.08G080900 Theobroma cacao HOM05D006906 ORTHO05D008578 1.1e-19 100.1 98 51.0
MELO3C003483.2 Cucumis melo HOM05D006906 ORTHO05D008578 1.4e-19 99.8 91 57.1
MBI16_g41120_MAGBIO Magnolia biondii HOM05D006906 ORTHO05D008578 2.5e-19 99.0 55 80.0
Duzib116G0218 Durio zibethinus HOM05D006906 ORTHO05D008578 3.2e-19 98.6 85 57.6
Prupe.3G080900 Prunus persica HOM05D006906 ORTHO05D008578 3.2e-19 98.6 70 67.1
CDE01G0046 Ceratophyllum demersum HOM05D006906 ORTHO05D008578 7.1e-19 97.4 48 89.6
Lsat_1_v5_gn_6_108161 Lactuca sativa HOM05D006906 ORTHO05D008578 7.1e-19 97.4 112 49.1
Duzib093G2206 Durio zibethinus HOM05D006906 ORTHO05D008578 9.3e-19 97.1 94 53.2
Gohir.A05G213900 Gossypium hirsutum HOM05D006906 ORTHO05D008578 1.2e-18 96.7 93 53.8
MSTRG.17420 Avicennia marina HOM05D006906 ORTHO05D008578 1.6e-18 96.3 104 56.7
COL.COLO4_35364 Corchorus olitorius HOM05D006906 ORTHO05D008578 1.6e-18 96.3 69 66.7
Gorai.009G224100 Gossypium raimondii HOM05D006906 ORTHO05D008578 2.1e-18 95.9 93 53.8
Solyc04g077130.1 Solanum lycopersicum HOM05D006906 ORTHO05D008578 3.5e-18 95.1 109 51.4
AUR62035774 Chenopodium quinoa HOM05D006906 ORTHO05D008578 4.6e-18 94.7 93 51.6
Phvul.009G113500 Phaseolus vulgaris HOM05D006906 ORTHO05D008578 4.6e-18 94.7 99 53.5
Glyma.06G089700 Glycine max HOM05D006906 ORTHO05D008578 7.9e-18 94.0 98 54.1
Gohir.D05G217300 Gossypium hirsutum HOM05D006906 ORTHO05D008578 7.9e-18 94.0 93 52.7
PGSC0003DMG400004936 Solanum tuberosum HOM05D006906 ORTHO05D008578 7.9e-18 94.0 109 51.4
CAN.G416.50 Capsicum annuum HOM05D006906 ORTHO05D008578 1.3e-17 93.2 113 48.7
DCAR_012832 Daucus carota HOM05D006906 ORTHO05D008578 1.3e-17 93.2 109 52.3
Sopen04g030750 Solanum pennellii HOM05D006906 ORTHO05D008578 2.3e-17 92.4 104 50.0
TWI12G0785 Tripterygium wilfordii HOM05D006906 ORTHO05D008578 3.0e-17 92.0 115 46.1
Os11g0550800 Oryza sativa ssp. japonica HOM05D006906 ORTHO05D008578 6.7e-17 90.9 69 65.2
Psat1g221800 Pisum sativum HOM05D006906 ORTHO05D008578 6.7e-17 90.9 82 59.8
PSO675G4379 Papaver somniferum HOM05D006906 ORTHO05D008578 1.1e-16 90.1 92 53.3
TPR.G12407 Trifolium pratense HOM05D006906 ORTHO05D008578 1.1e-16 90.1 89 55.1
PSO541G5790 Papaver somniferum HOM05D006906 ORTHO05D008578 1.9e-16 89.4 92 54.3
Peaxi162Scf00628g00053 Petunia axillaris HOM05D006906 ORTHO05D008578 1.9e-16 89.4 65 64.6
ECA246G4410 Erigeron canadensis HOM05D006906 ORTHO05D008578 3.3e-16 88.6 120 45.8
Nn5g30714 Nelumbo nucifera HOM05D006906 ORTHO05D008578 4.3e-16 88.2 90 56.7
Nitab4.5_0002415g0040 Nicotiana tabacum HOM05D006906 ORTHO05D008578 5.7e-16 87.8 118 46.6
Prupe.8G111300 Prunus persica HOM05D006906 ORTHO05D008578 5.7e-16 87.8 62 67.7
Medtr3g110640 Medicago truncatula HOM05D006906 ORTHO05D008578 9.7e-16 87.0 99 51.5
Nitab4.5_0001614g0100 Nicotiana tabacum HOM05D006906 ORTHO05D008578 1.6e-15 86.3 64 62.5
ATR0767G231 Amborella trichopoda HOM05D006906 ORTHO05D008578 2.8e-15 85.5 47 76.6
SalBow2G0068 Salvia bowleyana HOM05D006906 ORTHO05D008578 8.2e-15 84.0 83 54.2
unitig_21.g20623 Utricularia gibba HOM05D006906 ORTHO05D008578 1.8e-14 82.8 86 53.5
Migut.N02816 Erythranthe guttata HOM05D006906 ORTHO05D008578 2.6e-13 79.0 82 56.1
Manes.05G185700 Manihot esculenta HOM05D006906 ORTHO05D008578 1.9e-11 72.8 118 44.1
CBR_g48804 Chara braunii HOM05D006906 ORTHO05D008578 1.2e-10 70.1 86 44.2
HPP92_027718 Vanilla planifolia HOM05D006906 ORTHO05D008578 1.2e-10 70.1 58 63.8
HPP92_027715 Vanilla planifolia HOM05D006906 ORTHO05D008578 3.6e-10 68.6 58 62.1
Mapoly0090s0093 Marchantia polymorpha HOM05D006906 ORTHO05D008578 6.7e-09 64.3 93 44.1
Pp3c3_11690 Physcomitrium patens HOM05D006906 ORTHO05D008578 3.3e-08 62.0 56 58.9
SEGI_12109 Sequoiadendron giganteum HOM05D006906 ORTHO05D008578 2.2e-07 59.3 45 64.4


User provided reference genes

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