Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36668 Brassica carinata HOM05D005582 ORTHO05D007028 3.1e-78 295.0 149 100.0
BcaB08g36665 Brassica carinata HOM05D005582 ORTHO05D007028 4.1e-78 294.7 148 100.0
BraA10t44167Z Brassica rapa HOM05D005582 ORTHO05D007028 2.1e-74 282.3 148 95.3
BcaC04g18671 Brassica carinata HOM05D005582 ORTHO05D007028 1.0e-73 280.0 148 94.6
C09p57960 Brassica napus HOM05D005582 ORTHO05D007028 1.0e-73 280.0 148 94.6
BolC9t58663H Brassica oleracea HOM05D005582 ORTHO05D007028 1.0e-73 280.0 148 94.6
A10p21030 Brassica napus HOM05D005582 ORTHO05D007028 4.0e-73 278.1 148 93.9
Sp6g25800 Schrenkiella parvula HOM05D005582 ORTHO05D007028 6.5e-68 260.8 148 88.5
CARHR194490 Cardamine hirsuta HOM05D005582 ORTHO05D007028 1.7e-63 246.1 148 85.8
Thhalv10012423m.g Eutrema salsugineum HOM05D005582 ORTHO05D007028 4.9e-63 244.6 148 85.8
AL6G29800 Arabidopsis lyrata HOM05D005582 ORTHO05D007028 7.8e-61 237.3 148 81.1
AT5G18525 Arabidopsis thaliana HOM05D005582 ORTHO05D007028 2.5e-59 232.3 148 81.1
Aa31LG11G11190 Aethionema arabicum HOM05D005582 ORTHO05D007028 3.3e-59 231.9 148 79.7
Carub.0006s1680 Capsella rubella HOM05D005582 ORTHO05D007028 3.0e-57 225.3 148 78.4
THA.LOC104818852 Tarenaya hassleriana HOM05D005582 ORTHO05D007028 9.9e-40 167.2 148 62.2
CiPaw.02G071000 Carya illinoinensis HOM05D005582 ORTHO05D007028 6.9e-25 117.9 149 48.3
Atru.chr11.54 Acer truncatum HOM05D005582 ORTHO05D007028 1.5e-24 116.7 151 47.7
Haze_00795 Corylus avellana HOM05D005582 ORTHO05D007028 2.6e-24 115.9 149 49.7
Thecc.04G310500 Theobroma cacao HOM05D005582 ORTHO05D007028 1.3e-23 113.6 151 49.7
Cpa.g.sc146.39 Carica papaya HOM05D005582 ORTHO05D007028 2.2e-23 112.8 151 47.0
Cfa015717 Carpinus fangiana HOM05D005582 ORTHO05D007028 2.2e-23 112.8 149 49.0
MD13G1143700 Malus domestica HOM05D005582 ORTHO05D007028 6.4e-23 111.3 150 47.3
COL.COLO4_34544 Corchorus olitorius HOM05D005582 ORTHO05D007028 1.1e-22 110.5 151 45.7
QL06p013845 Quercus lobata HOM05D005582 ORTHO05D007028 1.4e-22 110.2 149 46.3
QL93p1872_0012 Quercus lobata HOM05D005582 ORTHO05D007028 1.4e-22 110.2 149 46.3
Manes.15G004000 Manihot esculenta HOM05D005582 ORTHO05D007028 1.9e-22 109.8 148 48.6
Rhsim04G0247200 Rhododendron simsii HOM05D005582 ORTHO05D007028 4.2e-22 108.6 151 45.7
Ciclev10004134m.g Citrus clementina HOM05D005582 ORTHO05D007028 7.1e-22 107.8 157 49.7
RcHm_v2.0_Chr4g0426871 Rosa chinensis HOM05D005582 ORTHO05D007028 6.0e-21 104.8 150 46.0
Potri.010G153300 Populus trichocarpa HOM05D005582 ORTHO05D007028 7.8e-21 104.4 149 47.0
Dinv29525 Davidia involucrata HOM05D005582 ORTHO05D007028 2.3e-20 102.8 152 46.1
Duzib151G1162 Durio zibethinus HOM05D005582 ORTHO05D007028 5.1e-20 101.7 150 45.3
Gohir.A09G067200 Gossypium hirsutum HOM05D005582 ORTHO05D007028 6.6e-20 101.3 152 43.4
Sabra10G0117900 Salix brachista HOM05D005582 ORTHO05D007028 8.7e-20 100.9 149 45.0
Gorai.006G081300 Gossypium raimondii HOM05D005582 ORTHO05D007028 1.1e-19 100.5 151 43.0
FvH4_4g21250 Fragaria vesca HOM05D005582 ORTHO05D007028 1.5e-19 100.1 153 44.4
FAN07G0038 Fragaria x ananassa HOM05D005582 ORTHO05D007028 1.9e-19 99.8 150 44.0
FAN12G2136 Fragaria x ananassa HOM05D005582 ORTHO05D007028 2.5e-19 99.4 150 43.3
Prupe.1G108200 Prunus persica HOM05D005582 ORTHO05D007028 4.3e-19 98.6 150 44.7
Sed0007110 Sechium edule HOM05D005582 ORTHO05D007028 7.3e-19 97.8 148 45.9
Lj3C839G18 Lonicera japonica HOM05D005582 ORTHO05D007028 9.6e-19 97.4 148 45.9
CSS0025323 Camellia sinensis var. sinensis HOM05D005582 ORTHO05D007028 4.8e-18 95.1 152 43.4
Gohir.D09G066800 Gossypium hirsutum HOM05D005582 ORTHO05D007028 6.2e-18 94.7 151 43.7
vmacro08001 Vaccinium macrocarpon HOM05D005582 ORTHO05D007028 6.2e-18 94.7 150 40.7
CANSAT01G1159 Cannabis sativa HOM05D005582 ORTHO05D007028 1.4e-17 93.6 153 41.8
Eucgr.B02209 Eucalyptus grandis HOM05D005582 ORTHO05D007028 1.4e-17 93.6 153 44.4
Phvul.007G062300 Phaseolus vulgaris HOM05D005582 ORTHO05D007028 9.0e-17 90.9 152 40.1
CsaV3_6G000150 Cucumis sativus L. HOM05D005582 ORTHO05D007028 1.5e-16 90.1 148 42.6
Lalb_Chr06g0160761 Lupinus albus HOM05D005582 ORTHO05D007028 3.4e-16 89.0 148 39.2
PSO170G3214 Papaver somniferum HOM05D005582 ORTHO05D007028 3.4e-16 89.0 150 44.7
Nitab4.5_0004665g0020 Nicotiana tabacum HOM05D005582 ORTHO05D007028 4.5e-16 88.6 154 42.2
arahy.Tifrunner.gnm1.ann1.6ZCT8S Arachis hypogaea HOM05D005582 ORTHO05D007028 5.8e-16 88.2 148 39.9
CAN.G484.83 Capsicum annuum HOM05D005582 ORTHO05D007028 1.3e-15 87.0 151 39.1
Sopen12g033750 Solanum pennellii HOM05D005582 ORTHO05D007028 1.3e-15 87.0 152 39.5
Nitab4.5_0000895g0160 Nicotiana tabacum HOM05D005582 ORTHO05D007028 1.7e-15 86.7 154 41.6
MELO3C021237.2 Cucumis melo HOM05D005582 ORTHO05D007028 2.9e-15 85.9 148 41.9
Glyma.10G243400 Glycine max HOM05D005582 ORTHO05D007028 4.9e-15 85.1 156 38.5
Glyma.20G150800 Glycine max HOM05D005582 ORTHO05D007028 6.4e-15 84.7 152 38.2
PGR031G2985 Punica granatum HOM05D005582 ORTHO05D007028 6.4e-15 84.7 156 39.1
arahy.Tifrunner.gnm1.ann1.ZZ97E1 Arachis hypogaea HOM05D005582 ORTHO05D007028 8.4e-15 84.3 154 38.3
VMungo0720G3059 Vigna mungo HOM05D005582 ORTHO05D007028 8.4e-15 84.3 152 37.5
ClCG06G004260 Citrullus lanatus HOM05D005582 ORTHO05D007028 1.4e-14 83.6 148 41.9
Lj5g0009067 Lotus japonicus HOM05D005582 ORTHO05D007028 2.4e-14 82.8 152 38.2
EL10Ac3g06266 Beta vulgaris HOM05D005582 ORTHO05D007028 3.2e-14 82.4 146 36.3
Nn4g25411 Nelumbo nucifera HOM05D005582 ORTHO05D007028 9.3e-14 80.9 152 42.1
TWI53G0357 Tripterygium wilfordii HOM05D005582 ORTHO05D007028 1.2e-13 80.5 149 42.3
Cc03_g00260 Coffea canephora HOM05D005582 ORTHO05D007028 1.6e-13 80.1 156 39.7
Psat6g203520 Pisum sativum HOM05D005582 ORTHO05D007028 1.6e-13 80.1 152 37.5
CDE02G3337 Ceratophyllum demersum HOM05D005582 ORTHO05D007028 2.1e-13 79.7 96 50.0
AUR62029987 Chenopodium quinoa HOM05D005582 ORTHO05D007028 2.7e-13 79.3 151 38.4
MSTRG.19398 Avicennia marina HOM05D005582 ORTHO05D007028 3.5e-13 79.0 151 36.4
Ca_10845_v3 Cicer arietinum L. HOM05D005582 ORTHO05D007028 3.5e-13 79.0 144 38.9
Ca_10846_v3 Cicer arietinum L. HOM05D005582 ORTHO05D007028 3.5e-13 79.0 144 38.9
Aqoxy5G02775 Aquilegia oxysepala HOM05D005582 ORTHO05D007028 7.9e-13 77.8 151 36.4
TPR.G26104 Trifolium pratense HOM05D005582 ORTHO05D007028 7.9e-13 77.8 144 37.5
AUR62002565 Chenopodium quinoa HOM05D005582 ORTHO05D007028 1.0e-12 77.4 154 35.1
ATR0796G139 Amborella trichopoda HOM05D005582 ORTHO05D007028 1.8e-12 76.6 158 37.3
Medtr1g102710 Medicago truncatula HOM05D005582 ORTHO05D007028 3.0e-12 75.9 142 38.7
SGA_v2.0_scaffold227G43203 Striga asiatica HOM05D005582 ORTHO05D007028 8.7e-12 74.3 155 36.1
Ah.07g203770 Amaranthus hybridus HOM05D005582 ORTHO05D007028 1.1e-11 73.9 146 36.3
HanXRQChr05g0148391 Helianthus annuus HOM05D005582 ORTHO05D007028 1.5e-11 73.6 148 35.8
Sc25g0001750 Simmondsia chinensis HOM05D005582 ORTHO05D007028 3.3e-11 72.4 147 38.1
Hund12246 Selenicereus undatus HOM05D005582 ORTHO05D007028 5.6e-11 71.6 148 36.5
ECA246G0223 Erigeron canadensis HOM05D005582 ORTHO05D007028 1.3e-10 70.5 148 36.5
Migut.N00012 Erythranthe guttata HOM05D005582 ORTHO05D007028 1.6e-10 70.1 151 37.7
Lsat_1_v5_gn_6_117861 Lactuca sativa HOM05D001037 ORTHO05D007028 2.8e-10 69.3 150 39.3
DCAR_023392 Daucus carota HOM05D005582 ORTHO05D007028 3.7e-10 68.9 154 37.0
SalBow5G3991 Salvia bowleyana HOM05D005582 ORTHO05D007028 4.8e-10 68.6 150 36.7
HPP92_015254 Vanilla planifolia HOM05D005582 ORTHO05D007028 4.8e-10 68.6 166 33.7
GSVIVG01017603001 Vitis vinifera HOM05D005582 ORTHO05D007028 4.8e-10 68.6 152 36.8
Peaxi162Scf01194g00137 Petunia axillaris HOM05D005582 ORTHO05D007028 6.2e-10 68.2 151 35.1
GSVIVG01017662001 Vitis vinifera HOM05D005582 ORTHO05D007028 2.4e-09 66.2 152 36.2
SEGI_34586 Sequoiadendron giganteum HOM05D005582 ORTHO05D007028 5.3e-09 65.1 115 40.9
HPP92_010030 Vanilla planifolia HOM05D005582 ORTHO05D007028 5.3e-09 65.1 166 33.1
CSS0001073 Camellia sinensis var. sinensis HOM05D005582 ORTHO05D007028 6.9e-09 64.7 85 45.9
TAR362G1290 Trochodendron aralioides HOM05D005582 ORTHO05D007028 4.5e-08 62.0 38 76.3
unitig_26.g10616 Utricularia gibba HOM05D005582 ORTHO05D007028 7.6e-08 61.2 95 35.8
SEGI_12439 Sequoiadendron giganteum HOM05D005582 ORTHO05D007028 1.7e-07 60.1 48 60.4
SMO203G0100 Selaginella moellendorffii HOM05D005582 ORTHO05D007028 1.1e-06 57.4 61 47.5
Mapoly0075s0059 Marchantia polymorpha HOM05D005582 ORTHO05D007028 3.2e-06 55.8 140 32.1
TAR362G0682 Trochodendron aralioides HOM05D005582 ORTHO05D007028 3.2e-06 55.8 98 37.8


User provided reference genes

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