Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 1.7e-186 656.0 357 100.0
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 3.7e-178 628.2 324 96.3
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 3.7e-178 628.2 324 96.3
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 6.4e-178 627.5 324 96.3
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 8.3e-178 627.1 326 95.7
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 2.4e-177 625.5 362 95.0
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 2.4e-177 625.5 325 96.3
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 2.1e-176 622.5 325 96.0
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 4.6e-176 621.3 328 94.8
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 7.8e-176 620.5 328 94.5
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 3.0e-175 618.6 326 94.5
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 2.5e-174 615.5 326 94.2
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 1.2e-173 613.2 326 93.9
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 6.2e-173 610.9 326 93.6
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 6.2e-173 610.9 326 93.6
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 7.6e-171 604.0 326 92.3
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 1.2e-168 596.7 337 89.0
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 3.0e-167 592.0 318 93.4
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 4.4e-163 578.2 309 94.2
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 1.6e-160 569.7 327 86.5
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 3.9e-159 565.1 335 85.4
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 2.3e-151 539.3 326 81.0
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 3.9e-151 538.5 326 81.3
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 8.7e-151 537.3 326 81.0
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 1.9e-150 536.2 325 79.7
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 5.6e-150 534.6 306 85.6
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 1.3e-149 533.5 326 81.3
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 4.8e-149 531.6 332 80.4
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 6.2e-149 531.2 326 79.4
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 6.2e-149 531.2 326 79.4
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 6.9e-148 527.7 328 79.3
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 3.4e-147 525.4 324 79.3
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 3.4e-147 525.4 328 79.3
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 5.8e-147 524.6 326 79.8
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 7.6e-147 524.2 323 78.9
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 9.9e-147 523.9 321 80.7
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 2.2e-146 522.7 323 78.9
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 2.9e-146 522.3 324 79.6
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 2.9e-146 522.3 324 78.7
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 6.4e-146 521.2 326 80.4
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 6.4e-146 521.2 324 79.0
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 8.4e-146 520.8 340 77.6
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 8.4e-146 520.8 322 79.2
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 1.4e-145 520.0 322 79.5
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 1.9e-145 519.6 325 78.2
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 2.4e-145 519.2 323 78.3
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 7.1e-145 517.7 323 78.3
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 1.2e-144 516.9 326 78.2
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 2.7e-144 515.8 323 78.9
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 2.7e-144 515.8 323 79.9
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 6.0e-144 514.6 326 77.3
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 1.0e-143 513.8 323 78.3
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 1.0e-143 513.8 326 77.9
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.8e-143 513.1 323 78.3
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 1.1e-142 510.4 326 76.1
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 2.5e-142 509.2 324 78.4
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 3.3e-142 508.8 324 78.7
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 4.3e-142 508.4 323 78.6
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 8.1e-141 504.2 327 76.1
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 1.1e-140 503.8 329 75.7
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 1.8e-140 503.1 319 79.3
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 1.8e-140 503.1 325 77.5
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 2.4e-140 502.7 323 77.7
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 2.4e-140 502.7 323 76.2
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 2.4e-140 502.7 327 76.5
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 3.1e-140 502.3 325 76.0
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 4.0e-140 501.9 326 74.8
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 4.0e-140 501.9 327 76.1
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 6.9e-140 501.1 327 76.1
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 1.5e-139 500.0 304 79.3
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 2.0e-139 499.6 323 77.1
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 1.0e-138 497.3 293 82.6
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 2.2e-138 496.1 325 76.0
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 2.9e-138 495.7 324 75.3
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 6.5e-138 494.6 308 77.6
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 4.2e-137 491.9 331 73.4
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 4.2e-137 491.9 402 64.4
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 7.1e-137 491.1 330 73.6
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 7.1e-137 491.1 330 73.6
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 1.6e-136 490.0 326 75.5
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 6.0e-136 488.0 328 75.0
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 1.0e-135 487.3 308 76.9
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 1.0e-135 487.3 321 75.4
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 1.3e-135 486.9 366 67.2
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 1.8e-135 486.5 326 75.2
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 3.0e-135 485.7 327 74.6
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 6.7e-135 484.6 325 75.7
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 1.1e-134 483.8 326 73.0
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 1.5e-134 483.4 326 75.8
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 1.9e-134 483.0 318 75.8
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 4.3e-134 481.9 306 75.8
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 7.4e-134 481.1 291 80.4
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 1.3e-133 480.3 306 77.5
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 5.3e-132 474.9 284 79.2
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 6.5e-130 468.0 323 71.8
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 7.2e-129 464.5 326 72.1
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 9.3e-129 464.2 287 77.0
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 1.6e-128 463.4 268 83.2
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 2.3e-127 459.5 342 68.7
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 6.7e-127 458.0 310 71.9
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 1.6e-125 453.4 272 79.0
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 6.3e-125 451.4 323 70.6
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 8.5e-122 441.0 270 77.8
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 2.5e-121 439.5 292 74.7
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 4.6e-120 435.3 277 76.9
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 6.1e-120 434.9 318 72.0
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 3.0e-119 432.6 342 67.3
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 6.3e-117 424.9 286 71.0
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 1.5e-115 420.2 298 71.1
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 2.6e-115 419.5 316 68.7
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 2.2e-114 416.4 300 69.0
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 1.9e-113 413.3 283 68.9
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 3.6e-112 409.1 287 69.3
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 3.3e-110 402.5 259 76.4
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 2.0e-107 393.3 279 71.0
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 2.6e-107 392.9 270 73.0
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 8.0e-104 381.3 253 73.9
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 1.8e-100 370.2 278 68.0
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 1.1e-92 344.4 313 58.1
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 1.5e-89 334.0 228 73.2
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 2.4e-84 316.6 217 74.7
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 8.6e-82 308.1 216 73.1
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 1.7e-61 240.7 153 73.9
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 4.1e-60 236.1 139 79.9
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 3.5e-59 233.0 326 45.1
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 1.5e-57 227.6 139 78.4
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 5.6e-57 225.7 167 69.5
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 5.8e-54 215.7 148 75.0
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 8.4e-53 211.8 132 74.2
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 2.1e-48 197.2 108 84.3
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 2.6e-46 190.3 108 79.6
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 2.2e-37 160.6 272 41.2
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 3.5e-35 153.3 129 55.8
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 4.6e-35 152.9 308 34.1
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 6.7e-34 149.1 112 64.3
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 3.8e-29 133.3 117 58.1
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 2.1e-27 127.5 181 45.9
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 2.1e-24 117.5 86 67.4
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 8.2e-24 115.5 296 32.1
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 5.8e-22 109.4 71 73.2
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 1.0e-21 108.6 87 59.8
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 2.9e-21 107.1 91 64.8
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 4.9e-21 106.3 93 65.6
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 3.9e-18 96.7 53 90.6
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 2.8e-16 90.5 53 75.5
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 3.7e-16 90.1 78 55.1
DCAR_030597 Daucus carota HOM05D004860 ORTHO05D006366 1.8e-15 87.8 52 80.8
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 1.0e-13 82.0 53 75.5
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 3.0e-10 70.5 40 80.0
QL06p004359 Quercus lobata HOM05D004860 ORTHO05D337479 3.7e-08 63.5 54 63.0
HPP92_017189 Vanilla planifolia HOM05D004860 ORTHO05D006366 6.9e-07 59.3 31 87.1
BcaC04g22550 Brassica carinata HOM05D004619 ORTHO05D032420 1.2e-06 58.5 38 78.9
Cc04_g14790 Coffea canephora HOM05D004860 ORTHO05D006366 5.9e-06 56.2 29 79.3


User provided reference genes

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