Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36600 Brassica carinata HOM05D005666 ORTHO05D007183 0.0e+00 1390.6 702 100.0
BraA10t44118Z Brassica rapa HOM05D005666 ORTHO05D007183 0.0e+00 1309.7 702 94.4
A10p20490 Brassica napus HOM05D005666 ORTHO05D007183 0.0e+00 1290.8 702 93.3
BolC9t58577H Brassica oleracea HOM05D005666 ORTHO05D007183 0.0e+00 1290.0 702 93.4
C09p57110 Brassica napus HOM05D005666 ORTHO05D007183 0.0e+00 1288.1 702 93.6
BcaC04g18594 Brassica carinata HOM05D005666 ORTHO05D007183 0.0e+00 1280.4 702 93.2
Thhalv10012831m.g Eutrema salsugineum HOM05D005666 ORTHO05D007183 0.0e+00 1267.7 700 91.9
Sp6g25230 Schrenkiella parvula HOM05D005666 ORTHO05D007183 0.0e+00 1265.0 702 91.3
Carub.0006s1746 Capsella rubella HOM05D005666 ORTHO05D007183 0.0e+00 1228.0 702 88.2
AL6G30550 Arabidopsis lyrata HOM05D005666 ORTHO05D007183 0.0e+00 1227.6 697 88.8
AT5G19130 Arabidopsis thaliana HOM05D005666 ORTHO05D007183 0.0e+00 1224.5 693 88.6
Aa31LG11G15280 Aethionema arabicum HOM05D005666 ORTHO05D007183 0.0e+00 1136.3 708 81.6
BcaB05g23370 Brassica carinata HOM05D005666 ORTHO05D007183 3.5e-244 848.6 696 69.0
THA.LOC104824726 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 1.0e-240 837.0 694 64.8
QL02p074714 Quercus lobata HOM05D005666 ORTHO05D007183 9.8e-239 830.5 712 61.7
CARHR193820 Cardamine hirsuta HOM05D005666 ORTHO05D007183 8.3e-238 827.4 478 86.4
Atru.chr6.2394 Acer truncatum HOM05D005666 ORTHO05D007183 2.4e-237 825.9 720 60.8
Potri.001G345200 Populus trichocarpa HOM05D005666 ORTHO05D007183 7.7e-236 820.8 719 60.2
Sabra16G0224200 Salix brachista HOM05D005666 ORTHO05D007183 1.7e-235 819.7 717 60.3
MD09G1027000 Malus domestica HOM05D005666 ORTHO05D007183 4.2e-234 815.1 716 60.9
MD17G1027000 Malus domestica HOM05D005666 ORTHO05D007183 1.8e-232 809.7 706 61.0
CANSAT64G2468 Cannabis sativa HOM05D005666 ORTHO05D007183 5.7e-231 804.7 713 60.4
Cpa.g.sc130.81 Carica papaya HOM05D005666 ORTHO05D007183 2.8e-230 802.4 719 59.7
TWI56G0621 Tripterygium wilfordii HOM05D005666 ORTHO05D007183 3.7e-230 802.0 717 58.4
Gorai.012G064300 Gossypium raimondii HOM05D005666 ORTHO05D007183 2.7e-228 795.8 719 59.4
Hma1.2p1_0999F.1_g246210 Hydrangea macrophylla HOM05D005666 ORTHO05D007183 3.5e-228 795.4 699 60.5
Rhsim10G0213300 Rhododendron simsii HOM05D005666 ORTHO05D007183 1.0e-227 793.9 708 60.2
Gohir.D04G057600 Gossypium hirsutum HOM05D005666 ORTHO05D007183 1.3e-227 793.5 720 59.0
Manes.17G112200 Manihot esculenta HOM05D005666 ORTHO05D007183 2.3e-227 792.7 710 59.2
Actinidia35772 Actinidia chinensis HOM05D005666 ORTHO05D007183 1.1e-226 790.4 718 59.2
GSVIVG01032407001 Vitis vinifera HOM05D005666 ORTHO05D007183 1.5e-226 790.0 701 60.1
CsaV3_5G027130 Cucumis sativus L. HOM05D005666 ORTHO05D007183 4.3e-226 788.5 711 58.5
TAR371G0349 Trochodendron aralioides HOM05D005666 ORTHO05D007183 5.6e-226 788.1 714 58.8
Duzib147G1248 Durio zibethinus HOM05D005666 ORTHO05D007183 1.2e-225 786.9 726 58.5
vmacro18287 Vaccinium macrocarpon HOM05D005666 ORTHO05D007183 3.6e-225 785.4 701 60.3
MELO3C021580.2 Cucumis melo HOM05D005666 ORTHO05D007183 5.2e-224 781.6 710 58.2
ClCG09G019260 Citrullus lanatus HOM05D005666 ORTHO05D007183 2.0e-223 779.6 716 58.0
RcHm_v2.0_Chr2g0172791 Rosa chinensis HOM05D005666 ORTHO05D007183 1.7e-222 776.5 741 56.5
CiPaw.03G043800 Carya illinoinensis HOM05D005666 ORTHO05D007183 2.9e-222 775.8 716 57.1
PGR083G1531 Punica granatum HOM05D005666 ORTHO05D007183 2.9e-222 775.8 703 58.6
TPR.G14074 Trifolium pratense HOM05D005666 ORTHO05D007183 4.1e-221 771.9 700 57.6
Haze_10618 Corylus avellana HOM05D005666 ORTHO05D007183 7.0e-221 771.2 691 59.9
Ciclev10014455m.g Citrus clementina HOM05D005666 ORTHO05D007183 4.6e-220 768.5 695 58.8
Gohir.A05G355700 Gossypium hirsutum HOM05D005666 ORTHO05D007183 4.6e-220 768.5 703 58.9
Lalb_Chr13g0300491 Lupinus albus HOM05D005666 ORTHO05D007183 7.8e-220 767.7 698 56.9
Phvul.004G006900 Phaseolus vulgaris HOM05D005666 ORTHO05D007183 7.8e-220 767.7 706 57.6
Sed0018750 Sechium edule HOM05D005666 ORTHO05D007183 7.8e-220 767.7 710 56.9
Eucgr.L01920 Eucalyptus grandis HOM05D005666 ORTHO05D007183 1.3e-219 766.9 712 57.2
Lj2g0025454 Lotus japonicus HOM05D005666 ORTHO05D007183 1.3e-219 766.9 684 58.3
COL.COLO4_29116 Corchorus olitorius HOM05D005666 ORTHO05D007183 6.6e-219 764.6 749 57.0
ECA246G2761 Erigeron canadensis HOM05D005666 ORTHO05D007183 1.1e-218 763.8 700 58.0
arahy.Tifrunner.gnm1.ann1.XQUA9L Arachis hypogaea HOM05D005666 ORTHO05D007183 2.5e-218 762.7 701 56.9
FAN14G3607 Fragaria x ananassa HOM05D005666 ORTHO05D007183 3.3e-218 762.3 743 55.5
Glyma.05G003600 Glycine max HOM05D005666 ORTHO05D007183 1.6e-217 760.0 707 56.6
Lalb_Chr12g0199101 Lupinus albus HOM05D005666 ORTHO05D007183 1.6e-217 760.0 698 57.3
Migut.K01395 Erythranthe guttata HOM05D005666 ORTHO05D007183 2.8e-217 759.2 689 59.2
Sc03g0007440 Simmondsia chinensis HOM05D005666 ORTHO05D007183 1.1e-216 757.3 696 58.2
Medtr8g094170 Medicago truncatula HOM05D005666 ORTHO05D007183 1.4e-216 756.9 700 56.6
VMungo0464G0315 Vigna mungo HOM05D005666 ORTHO05D007183 1.4e-216 756.9 715 55.7
Rhsim08G0049000 Rhododendron simsii HOM05D005666 ORTHO05D007183 1.2e-215 753.8 690 59.7
Thecc.04G017300 Theobroma cacao HOM05D005666 ORTHO05D007183 3.4e-215 752.3 721 57.0
HanXRQChr15g0475291 Helianthus annuus HOM05D005666 ORTHO05D007183 4.4e-215 751.9 696 57.6
FAN09G4801 Fragaria x ananassa HOM05D005666 ORTHO05D007183 7.5e-215 751.1 743 54.6
Ca_04159_v3 Cicer arietinum L. HOM05D005666 ORTHO05D007183 8.3e-214 747.7 689 56.2
FAN05G0542 Fragaria x ananassa HOM05D005666 ORTHO05D007183 1.4e-213 746.9 758 54.7
FAN02G4175 Fragaria x ananassa HOM05D005666 ORTHO05D007183 1.2e-212 743.8 753 54.3
CAN.G1057.3 Capsicum annuum HOM05D005666 ORTHO05D007183 2.0e-212 743.0 708 55.4
AUR62026681 Chenopodium quinoa HOM05D005666 ORTHO05D007183 3.5e-212 742.3 720 55.0
SGA_v2.0_scaffold47G17503 Striga asiatica HOM05D005666 ORTHO05D007183 8.6e-211 737.6 704 57.1
Prupe.3G291700 Prunus persica HOM05D005666 ORTHO05D007183 2.5e-210 736.1 652 58.7
PSO017G6377 Papaver somniferum HOM05D005666 ORTHO05D007183 7.3e-210 734.6 700 56.7
PGSC0003DMG400006959 Solanum tuberosum HOM05D005666 ORTHO05D007183 7.3e-210 734.6 705 55.5
Sopen02g016930 Solanum pennellii HOM05D005666 ORTHO05D007183 4.7e-209 731.9 721 54.5
Cc07_g01670 Coffea canephora HOM05D005666 ORTHO05D007183 8.1e-209 731.1 711 56.1
DCAR_027499 Daucus carota HOM05D005666 ORTHO05D007183 1.8e-208 729.9 674 56.8
Nn3g16730 Nelumbo nucifera HOM05D005666 ORTHO05D007183 2.3e-208 729.6 700 57.6
SalBow7G2092 Salvia bowleyana HOM05D005666 ORTHO05D007183 1.2e-207 727.2 708 54.9
Nitab4.5_0008365g0020 Nicotiana tabacum HOM05D005666 ORTHO05D007183 2.6e-207 726.1 705 56.2
Lsat_1_v5_gn_0_47721 Lactuca sativa HOM05D005666 ORTHO05D007183 4.4e-207 725.3 666 57.5
PSO478G0823 Papaver somniferum HOM05D005666 ORTHO05D007183 5.8e-207 724.9 700 55.9
arahy.Tifrunner.gnm1.ann1.D3X7TW Arachis hypogaea HOM05D005666 ORTHO05D007183 2.2e-206 723.0 681 56.1
HanXRQChr17g0548481 Helianthus annuus HOM05D005666 ORTHO05D007183 1.4e-205 720.3 695 56.0
CSS0006540 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 7.1e-205 718.0 654 59.0
Aqoxy3G01199 Aquilegia oxysepala HOM05D005666 ORTHO05D007183 1.3e-203 713.8 724 53.9
Ah.05g168070 Amaranthus hybridus HOM05D005666 ORTHO05D007183 4.3e-202 708.8 709 53.5
Lju41A42G100 Lonicera japonica HOM05D005666 ORTHO05D007183 4.3e-202 708.8 613 59.9
Hund22837 Selenicereus undatus HOM05D005666 ORTHO05D007183 2.2e-198 696.4 715 53.0
FvH4_6g51190 Fragaria vesca HOM05D005666 ORTHO05D007183 4.9e-198 695.3 684 54.5
Nitab4.5_0002529g0030 Nicotiana tabacum HOM05D005666 ORTHO05D007183 1.6e-196 690.3 690 55.7
Glyma.19G004600 Glycine max HOM05D005666 ORTHO05D007183 3.6e-193 679.1 643 54.7
Solyc02g067820.4 Solanum lycopersicum HOM05D005666 ORTHO05D007183 6.2e-193 678.3 700 53.4
Hma1.2p1_0999F.1_g246220 Hydrangea macrophylla HOM05D005666 ORTHO05D007183 4.0e-192 675.6 595 60.5
MBI16_g31718_MAGBIO Magnolia biondii HOM05D005666 ORTHO05D007183 2.1e-188 663.3 707 53.2
Psat1g054440 Pisum sativum HOM05D005666 ORTHO05D007183 7.8e-188 661.4 602 56.8
Peaxi162Scf00080g00117 Petunia axillaris HOM05D005666 ORTHO05D007183 1.0e-187 661.0 688 53.2
Dinv33442 Davidia involucrata HOM05D005666 ORTHO05D007183 1.3e-187 660.6 654 55.4
DCAR_011253 Daucus carota HOM05D005666 ORTHO05D007183 1.1e-184 651.0 772 48.7
EL10Ac1g01578 Beta vulgaris HOM05D005666 ORTHO05D007183 1.8e-184 650.2 732 49.7
Oeu048621.1 Olea europaea HOM05D005666 ORTHO05D007183 1.2e-183 647.5 594 56.2
CDE05G2460 Ceratophyllum demersum HOM05D005666 ORTHO05D007183 3.4e-183 646.0 694 51.4
FAN05G2905 Fragaria x ananassa HOM05D005666 ORTHO05D007183 5.1e-179 632.1 639 56.0
Zm00001eb156580 Zea mays HOM05D005666 ORTHO05D007183 1.6e-177 627.1 706 48.7
HPP92_013793 Vanilla planifolia HOM05D005666 ORTHO05D007183 1.0e-171 607.8 693 50.9
CSS0011984 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 2.3e-171 606.7 598 57.0
unitig_747.g21863 Utricularia gibba HOM05D005666 ORTHO05D007183 3.7e-169 599.4 699 48.8
Eucgr.J02243 Eucalyptus grandis HOM05D005666 ORTHO05D007183 2.0e-167 593.6 515 59.0
ATR0686G164 Amborella trichopoda HOM05D005666 ORTHO05D007183 1.9e-157 560.5 606 50.8
CSS0008870 Camellia sinensis var. sinensis HOM05D005666 ORTHO05D007183 8.5e-142 508.4 419 63.7
Actinidia16943 Actinidia chinensis HOM05D005666 ORTHO05D007183 3.0e-139 500.0 631 47.9
vmacro06910 Vaccinium macrocarpon HOM05D005666 ORTHO05D007183 8.8e-139 498.4 532 53.9
AUR62040590 Chenopodium quinoa HOM05D005666 ORTHO05D007183 1.1e-128 464.9 426 56.6
Mapoly0008s0195 Marchantia polymorpha HOM05D005666 ORTHO05D007183 1.6e-116 424.5 744 38.3
AagrBONN_evm.TU.Sc2ySwM_344.4982 Anthoceros agrestis HOM05D005666 ORTHO05D007183 1.0e-107 395.2 773 35.1
SMO134G0274 Selaginella moellendorffii HOM05D005666 ORTHO05D007183 1.0e-102 378.6 712 36.4
THA.LOC109116951 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 2.1e-100 370.9 290 67.9
Pp3c22_6140 Physcomitrium patens HOM05D005666 ORTHO05D007183 2.3e-86 324.3 470 39.4
ATR0762G005 Amborella trichopoda HOM05D005666 ORTHO05D007183 3.5e-79 300.4 328 49.1
SEGI_39396 Sequoiadendron giganteum HOM05D005666 ORTHO05D007183 7.8e-79 299.3 327 48.6
ATR0919G001 Amborella trichopoda HOM05D005666 ORTHO05D007183 9.6e-61 239.2 219 55.3
SHI16418 Sapria himalayana HOM05D005666 ORTHO05D007183 9.0e-59 232.6 284 48.9
A02p05250 Brassica napus HOM05D005666 ORTHO05D007183 3.1e-51 207.6 306 44.8
SHI16416 Sapria himalayana HOM05D005666 ORTHO05D007183 1.5e-50 205.3 264 45.8
Os01g0682200 Oryza sativa ssp. japonica HOM05D005666 ORTHO05D007183 2.1e-47 194.9 251 42.6
CBR_g49194 Chara braunii HOM05D005666 ORTHO05D007183 2.2e-44 184.9 425 30.4
THA.LOC104820325 Tarenaya hassleriana HOM05D005666 ORTHO05D007183 1.0e-41 176.0 156 60.9
MCO10G117 Micromonas commoda HOM05D005666 ORTHO05D007183 1.8e-35 155.2 705 26.5
TPR.G20372 Trifolium pratense HOM05D005666 ORTHO05D007183 6.5e-33 146.7 156 50.6
Oeu030978.1 Olea europaea HOM05D005666 ORTHO05D007183 7.0e-27 126.7 122 54.1
BolC2t06938H Brassica oleracea HOM05D005666 ORTHO05D043081 2.1e-23 115.2 183 47.0
Oeu048620.1 Olea europaea HOM05D005666 ORTHO05D007183 2.4e-19 101.7 91 59.3
CiPaw.04G028500 Carya illinoinensis HOM05D005666 ORTHO05D007183 2.9e-17 94.7 62 77.4
FvH4_6g51172 Fragaria vesca HOM05D005666 ORTHO05D007183 5.9e-10 70.5 61 63.9
SEGI_03684 Sequoiadendron giganteum HOM05D005666 ORTHO05D007183 9.4e-08 63.2 90 42.2
Thecc.05G064500 Theobroma cacao HOM05D005666 ORTHO05D007183 1.6e-07 62.4 103 37.9


User provided reference genes

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