Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36584 Brassica carinata HOM05D005571 ORTHO05D006919 1.7e-109 399.4 220 100.0
C03p11000 Brassica napus HOM05D005571 ORTHO05D006919 3.7e-59 232.3 220 67.3
BcaB01g05139 Brassica carinata HOM05D005571 ORTHO05D006919 8.2e-59 231.1 220 66.8
BolC3t13569H Brassica oleracea HOM05D005571 ORTHO05D006919 3.1e-58 229.2 221 67.0
BcaB01g04868 Brassica carinata HOM05D005571 ORTHO05D006919 1.1e-55 220.7 227 64.3
A03p09420 Brassica napus HOM05D005571 ORTHO05D006919 1.9e-55 219.9 222 64.0
BraA03t10260Z Brassica rapa HOM05D005571 ORTHO05D006919 1.9e-55 219.9 222 64.0
Sp6g25100 Schrenkiella parvula HOM05D005571 ORTHO05D006919 5.5e-55 218.4 225 66.7
Thhalv10014687m.g Eutrema salsugineum HOM05D005571 ORTHO05D006919 3.0e-53 212.6 228 65.8
AL8G19260 Arabidopsis lyrata HOM05D005571 ORTHO05D006919 3.7e-51 205.7 227 59.9
AT5G42330 Arabidopsis thaliana HOM05D005571 ORTHO05D006919 6.5e-48 194.9 225 57.8
BcaC04g18579 Brassica carinata HOM05D005571 ORTHO05D006919 1.5e-47 193.7 225 58.7
C09p56960 Brassica napus HOM05D005571 ORTHO05D006919 1.5e-47 193.7 225 58.7
A10p20370 Brassica napus HOM05D005571 ORTHO05D006919 3.6e-46 189.1 222 56.3
BolC9t58559H Brassica oleracea HOM05D005571 ORTHO05D006919 1.4e-45 187.2 186 62.9
CARHR284960 Cardamine hirsuta HOM05D005571 ORTHO05D006919 5.2e-45 185.3 235 58.7
Carub.0008s0685 Capsella rubella HOM05D005571 ORTHO05D006919 2.0e-44 183.3 228 58.3
Aa31LG9G12460 Aethionema arabicum HOM05D005571 ORTHO05D006919 3.2e-39 166.0 228 52.6
BraA10t44107Z Brassica rapa HOM05D005571 ORTHO05D006919 1.5e-31 140.6 236 49.6
COL.COLO4_05218 Corchorus olitorius HOM05D005571 ORTHO05D006919 2.3e-29 133.3 223 48.4
THA.LOC104825425 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 4.0e-29 132.5 232 49.6
Ciclev10002509m.g Citrus clementina HOM05D005571 ORTHO05D006919 3.4e-28 129.4 217 44.7
Potri.005G250800 Populus trichocarpa HOM05D005571 ORTHO05D006919 8.3e-27 124.8 206 49.5
Thecc.08G059400 Theobroma cacao HOM05D005571 ORTHO05D006919 1.1e-26 124.4 228 45.2
Peaxi162Scf00893g00005 Petunia axillaris HOM05D005571 ORTHO05D006919 2.4e-26 123.2 220 42.3
BcaC03g13663 Brassica carinata HOM05D005571 ORTHO05D006919 3.1e-26 122.9 137 59.1
BNapus_Darmor_BZH_scaffold_38p02630 Brassica napus HOM05D005571 ORTHO05D006919 3.1e-26 122.9 137 59.1
CiPaw.07G138600 Carya illinoinensis HOM05D005571 ORTHO05D006919 9.2e-26 121.3 197 48.2
Nitab4.5_0000588g0080 Nicotiana tabacum HOM05D005571 ORTHO05D006919 1.6e-25 120.6 220 41.4
CAN.G311.116 Capsicum annuum HOM05D005571 ORTHO05D006919 2.0e-25 120.2 224 39.3
Sabra05G0194000 Salix brachista HOM05D005571 ORTHO05D006919 2.0e-25 120.2 204 48.0
vmacro21809 Vaccinium macrocarpon HOM05D005571 ORTHO05D006919 2.0e-25 120.2 195 48.7
A02p05480 Brassica napus HOM05D005571 ORTHO05D006919 2.7e-25 119.8 138 57.2
BraA02t05499Z Brassica rapa HOM05D005571 ORTHO05D006919 2.7e-25 119.8 138 57.2
ClCG08G009410 Citrullus lanatus HOM05D005571 ORTHO05D006919 4.5e-25 119.0 233 42.9
GSVIVG01008671001 Vitis vinifera HOM05D005571 ORTHO05D006919 1.0e-24 117.9 222 42.8
Sed0002015 Sechium edule HOM05D005571 ORTHO05D006919 2.9e-24 116.3 222 41.0
THA.LOC104813174 Tarenaya hassleriana HOM05D005571 ORTHO05D006919 3.8e-24 115.9 218 45.0
TWI56G1114 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 8.6e-24 114.8 216 45.4
Duzib116G0932 Durio zibethinus HOM05D005571 ORTHO05D006919 1.5e-23 114.0 217 43.8
Sopen04g035980 Solanum pennellii HOM05D005571 ORTHO05D006919 1.5e-23 114.0 233 40.3
PGR083G0609 Punica granatum HOM05D005571 ORTHO05D006919 1.9e-23 113.6 230 42.2
PGSC0003DMG400009903 Solanum tuberosum HOM05D005571 ORTHO05D006919 2.5e-23 113.2 207 42.0
Rhsim06G0007100 Rhododendron simsii HOM05D005571 ORTHO05D006919 5.6e-23 112.1 194 48.5
Haze_22782 Corylus avellana HOM05D005571 ORTHO05D006919 9.5e-23 111.3 230 43.0
MELO3C026535.2 Cucumis melo HOM05D005571 ORTHO05D006919 9.5e-23 111.3 232 40.1
Cfa014080 Carpinus fangiana HOM05D005571 ORTHO05D006919 2.1e-22 110.2 213 46.9
Oeu064631.1 Olea europaea HOM05D005571 ORTHO05D006919 3.6e-22 109.4 227 42.3
CsaV3_6G031520 Cucumis sativus L. HOM05D005571 ORTHO05D006919 4.7e-22 109.0 233 40.3
Actinidia17042 Actinidia chinensis HOM05D005571 ORTHO05D006919 6.1e-22 108.6 208 45.7
Manes.18G005301 Manihot esculenta HOM05D005571 ORTHO05D006919 6.1e-22 108.6 195 42.6
Gorai.005G113600 Gossypium raimondii HOM05D005571 ORTHO05D006919 8.0e-22 108.2 210 45.7
TWI12G0392 Tripterygium wilfordii HOM05D005571 ORTHO05D006919 1.4e-21 107.5 220 44.5
Gohir.D05G182600 Gossypium hirsutum HOM05D005571 ORTHO05D006919 2.3e-21 106.7 229 44.5
Gorai.009G187900 Gossypium raimondii HOM05D005571 ORTHO05D006919 2.3e-21 106.7 229 44.5
QL02p014184 Quercus lobata HOM05D005571 ORTHO05D006919 2.3e-21 106.7 215 40.9
CiPaw.08G073400 Carya illinoinensis HOM05D005571 ORTHO05D006919 3.0e-21 106.3 225 42.2
Gohir.A05G179400 Gossypium hirsutum HOM05D005571 ORTHO05D006919 4.0e-21 105.9 229 44.1
RcHm_v2.0_Chr6g0304291 Rosa chinensis HOM05D005571 ORTHO05D006919 4.0e-21 105.9 203 42.4
Actinidia15492 Actinidia chinensis HOM05D005571 ORTHO05D006919 5.2e-21 105.5 220 42.7
Gohir.D02G100200 Gossypium hirsutum HOM05D005571 ORTHO05D006919 5.2e-21 105.5 210 45.2
FvH4_2g37430 Fragaria vesca HOM05D005571 ORTHO05D006919 6.8e-21 105.1 208 40.4
Oeu035840.1 Olea europaea HOM05D005571 ORTHO05D006919 6.8e-21 105.1 192 41.7
MSTRG.24929 Avicennia marina HOM05D005571 ORTHO05D006919 8.9e-21 104.8 228 39.5
Duzib093G0863 Durio zibethinus HOM05D005571 ORTHO05D006919 1.2e-20 104.4 217 41.9
Aqoxy6G01708 Aquilegia oxysepala HOM05D005571 ORTHO05D006919 2.0e-20 103.6 231 42.0
Cc10_g00650 Coffea canephora HOM05D005571 ORTHO05D006919 2.6e-20 103.2 225 40.0
CSS0030992 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 7.5e-20 101.7 232 42.2
FAN27G2782 Fragaria x ananassa HOM05D005571 ORTHO05D006919 7.5e-20 101.7 208 39.9
Potri.002G010400 Populus trichocarpa HOM05D005571 ORTHO05D006919 7.5e-20 101.7 224 40.6
CSS0029462 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 9.8e-20 101.3 205 42.4
Migut.C00385 Erythranthe guttata HOM05D005571 ORTHO05D006919 9.8e-20 101.3 237 40.5
Sabra02G0007800 Salix brachista HOM05D005571 ORTHO05D006919 9.8e-20 101.3 223 40.8
Lj1g0015612 Lotus japonicus HOM05D005571 ORTHO05D006919 2.9e-19 99.8 200 43.5
Manes.05G133900 Manihot esculenta HOM05D005571 ORTHO05D006919 2.9e-19 99.8 214 37.4
Glyma.04G017800 Glycine max HOM05D005571 ORTHO05D006919 1.1e-18 97.8 220 40.9
Glyma.06G018100 Glycine max HOM05D005571 ORTHO05D006919 1.4e-18 97.4 220 40.0
Hma1.2p1_0157F.1_g069390 Hydrangea macrophylla HOM05D005571 ORTHO05D006919 1.8e-18 97.1 223 39.9
Atru.chr13.137 Acer truncatum HOM05D005571 ORTHO05D006919 2.4e-18 96.7 164 50.0
FAN20G2818 Fragaria x ananassa HOM05D005571 ORTHO05D006919 2.4e-18 96.7 208 38.9
Lj4A11T70 Lonicera japonica HOM05D005571 ORTHO05D006919 3.2e-18 96.3 205 42.4
TAR628G0603 Trochodendron aralioides HOM05D005571 ORTHO05D006919 5.4e-18 95.5 210 43.3
Dinv05532 Davidia involucrata HOM05D005571 ORTHO05D006919 1.6e-17 94.0 207 40.6
SalBow7G0698 Salvia bowleyana HOM05D005571 ORTHO05D006919 2.0e-17 93.6 232 38.4
CANSAT25G0564 Cannabis sativa HOM05D005571 ORTHO05D006919 2.7e-17 93.2 212 39.2
FAN15G1374 Fragaria x ananassa HOM05D005571 ORTHO05D006919 4.6e-17 92.4 208 38.9
SalBow5G5667 Salvia bowleyana HOM05D005571 ORTHO05D006919 4.6e-17 92.4 210 39.5
MSTRG.977 Avicennia marina HOM05D005571 ORTHO05D006919 7.8e-17 91.7 202 39.6
arahy.Tifrunner.gnm1.ann1.VC4QUA Arachis hypogaea HOM05D005571 ORTHO05D006919 1.3e-16 90.9 215 40.0
SGA_v2.0_scaffold133G34635 Striga asiatica HOM05D005571 ORTHO05D006919 1.7e-16 90.5 228 39.0
arahy.Tifrunner.gnm1.ann1.G9B5FS Arachis hypogaea HOM05D005571 ORTHO05D006919 3.0e-16 89.7 216 39.4
DCAR_009532 Daucus carota HOM05D005571 ORTHO05D006919 5.0e-16 89.0 231 38.1
VMungo1309G0957 Vigna mungo HOM05D005571 ORTHO05D006919 5.0e-16 89.0 225 39.1
Phvul.009G010900 Phaseolus vulgaris HOM05D005571 ORTHO05D006919 1.9e-15 87.0 225 39.6
Cfa012650 Carpinus fangiana HOM05D005571 ORTHO05D006919 2.5e-15 86.7 194 42.3
HanXRQChr14g0428071 Helianthus annuus HOM05D005571 ORTHO05D006919 4.3e-15 85.9 237 38.4
Hund01764 Selenicereus undatus HOM05D005571 ORTHO05D006919 7.3e-15 85.1 222 37.8
Sc02g0009100 Simmondsia chinensis HOM05D005571 ORTHO05D006919 2.1e-14 83.6 216 36.6
unitig_747.g21542 Utricularia gibba HOM05D005571 ORTHO05D006919 3.6e-14 82.8 238 35.7
MBI05_g43168_MAGBIO Magnolia biondii HOM05D005571 ORTHO05D006919 4.7e-14 82.4 220 37.7
CSS0039739 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 6.2e-14 82.0 202 39.1
TPR.G38112 Trifolium pratense HOM05D005571 ORTHO05D006919 8.0e-14 81.6 209 38.3
Medtr3g115300 Medicago truncatula HOM05D005571 ORTHO05D006919 1.4e-13 80.9 203 38.4
Nn6g31737 Nelumbo nucifera HOM05D005571 ORTHO05D006919 1.4e-13 80.9 195 37.9
Lsat_1_v5_gn_2_4041 Lactuca sativa HOM05D005571 ORTHO05D006919 6.8e-13 78.6 234 37.2
EL10Ac1g01953 Beta vulgaris HOM05D005571 ORTHO05D006919 8.9e-13 78.2 218 35.8
PSO675G2006 Papaver somniferum HOM05D005571 ORTHO05D006919 1.5e-12 77.4 228 34.6
CSS0038566 Camellia sinensis var. sinensis HOM05D005571 ORTHO05D006919 2.0e-12 77.0 142 44.4
Ca_15432_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 2.0e-12 77.0 125 44.0
Ca_15457_v3 Cicer arietinum L. HOM05D005571 ORTHO05D006919 2.0e-12 77.0 125 44.0
Ah.11g041150 Amaranthus hybridus HOM05D005571 ORTHO05D006919 3.4e-12 76.3 212 34.4
Lalb_Chr23g0265781 Lupinus albus HOM05D005571 ORTHO05D006919 7.5e-12 75.1 206 37.9
PSO541G4697 Papaver somniferum HOM05D005571 ORTHO05D006919 7.5e-12 75.1 229 33.2
Prupe.1G354300 Prunus persica HOM05D005571 ORTHO05D006919 9.8e-12 74.7 260 33.5
Hund05103 Selenicereus undatus HOM05D001348 ORTHO05D002788 1.3e-11 74.3 213 36.2
HanXRQChr06g0183961 Helianthus annuus HOM05D005571 ORTHO05D006919 2.2e-11 73.6 213 36.6
Psat0s2670g0120 Pisum sativum HOM05D005571 ORTHO05D006919 3.7e-11 72.8 237 32.5
Oeu000692.1 Olea europaea HOM05D005571 ORTHO05D006919 4.9e-11 72.4 223 34.5
Dinv31944 Davidia involucrata HOM05D005571 ORTHO05D006919 6.4e-11 72.0 205 38.5
Sabra11G0114300 Salix brachista HOM05D005571 ORTHO05D006919 6.4e-11 72.0 132 45.5
unitig_0.g2084 Utricularia gibba HOM05D005571 ORTHO05D006919 2.4e-10 70.1 195 35.9
AUR62040795 Chenopodium quinoa HOM05D005571 ORTHO05D006919 4.1e-10 69.3 220 33.2
ECA238G3324 Erigeron canadensis HOM05D005571 ORTHO05D007881 7.8e-09 65.1 161 43.5
SHI42933 Sapria himalayana HOM05D005571 ORTHO05D006919 1.1e-07 61.2 194 35.1
Cpa.g.c36471 Carica papaya HOM05D005571 ORTHO05D006919 1.5e-07 60.8 90 54.4
CDE04G0695 Ceratophyllum demersum HOM05D005571 ORTHO05D006919 1.2e-06 57.8 148 35.1


User provided reference genes

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