Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 5.3e-116 421.0 209 100.0
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 5.3e-100 367.9 209 88.0
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 1.6e-99 366.3 209 87.6
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 1.6e-99 366.3 209 87.1
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 1.6e-99 366.3 209 87.6
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 1.9e-97 359.4 209 86.6
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 4.2e-97 358.2 209 87.6
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 1.2e-96 356.7 223 81.6
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 3.6e-96 355.1 209 86.6
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 1.3e-93 346.7 220 82.3
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 5.3e-92 341.3 231 78.4
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 5.3e-92 341.3 218 81.7
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 1.1e-89 333.6 204 80.9
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 1.5e-89 333.2 209 80.9
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 4.2e-89 331.6 209 81.3
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 2.5e-81 305.8 188 81.4
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 2.1e-80 302.8 209 75.1
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 3.4e-78 295.4 208 73.6
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 7.8e-75 284.3 217 67.7
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 2.9e-74 282.3 199 77.4
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 1.2e-72 276.9 229 62.4
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 2.8e-72 275.8 229 62.4
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 1.0e-71 273.9 213 72.3
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 1.0e-71 273.9 213 72.3
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 2.3e-71 272.7 227 62.1
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 3.1e-71 272.3 228 62.3
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 3.1e-71 272.3 228 62.3
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 4.0e-71 271.9 228 61.8
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 1.2e-70 270.4 211 65.4
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 3.4e-70 268.9 225 62.2
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 3.4e-70 268.9 227 61.7
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 4.4e-70 268.5 220 65.9
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.7e-69 266.5 218 65.6
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 2.2e-69 266.2 218 65.6
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 8.3e-69 264.2 229 59.8
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 8.3e-69 264.2 226 61.9
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 1.1e-68 263.8 224 61.2
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 1.1e-68 263.8 227 60.8
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 1.1e-68 263.8 226 60.6
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 1.4e-68 263.5 223 60.1
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 1.4e-68 263.5 230 61.3
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 2.4e-68 262.7 229 60.3
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 3.2e-68 262.3 227 61.7
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 4.1e-68 261.9 218 64.2
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 5.4e-68 261.5 228 61.0
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 5.4e-68 261.5 223 61.0
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 5.4e-68 261.5 223 61.0
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 5.4e-68 261.5 220 61.8
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 1.2e-67 260.4 222 60.8
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 1.6e-67 260.0 226 60.2
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.7e-67 259.2 223 60.5
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 2.7e-67 259.2 229 61.1
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 2.7e-67 259.2 227 61.2
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 4.6e-67 258.5 223 60.5
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 1.3e-66 256.9 226 60.2
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.3e-66 256.9 224 60.7
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 1.7e-66 256.5 219 60.7
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 1.7e-66 256.5 209 67.5
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 3.0e-66 255.8 229 60.7
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 3.9e-66 255.4 227 60.4
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 6.6e-66 254.6 227 60.4
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 8.6e-66 254.2 216 61.1
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 8.6e-66 254.2 224 58.5
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 8.6e-66 254.2 226 58.8
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 1.1e-65 253.8 222 58.1
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 1.9e-65 253.1 228 61.0
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 3.3e-65 252.3 226 60.2
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 3.3e-65 252.3 226 58.4
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 4.3e-65 251.9 224 58.5
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 7.3e-65 251.1 223 57.4
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 7.3e-65 251.1 211 60.2
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 7.3e-65 251.1 225 58.7
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 9.5e-65 250.8 217 62.2
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 9.5e-65 250.8 227 58.6
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 2.1e-64 249.6 223 57.8
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 4.7e-64 248.4 222 59.5
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 1.1e-63 247.3 223 57.0
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.1e-63 247.3 229 58.1
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 2.3e-63 246.1 236 56.4
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 6.8e-63 244.6 225 57.8
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 8.9e-63 244.2 215 60.5
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 8.9e-63 244.2 215 62.3
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 1.5e-62 243.4 224 58.5
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 2.6e-62 242.7 222 58.6
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 5.8e-62 241.5 225 56.9
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 5.8e-62 241.5 217 59.9
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 7.5e-62 241.1 217 59.0
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 9.8e-62 240.7 232 55.6
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 9.8e-62 240.7 215 57.2
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 9.8e-62 240.7 216 60.6
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 6.4e-61 238.0 223 57.4
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 2.4e-60 236.1 219 55.7
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 3.2e-60 235.7 216 57.9
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 5.4e-60 235.0 224 54.5
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 7.0e-60 234.6 226 54.0
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 1.2e-59 233.8 205 58.0
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 1.6e-59 233.4 223 54.3
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 3.5e-59 232.3 232 53.9
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 7.8e-59 231.1 216 57.9
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 7.8e-59 231.1 209 58.9
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 7.8e-59 231.1 215 57.2
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.7e-58 229.9 216 56.9
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 3.0e-58 229.2 209 58.4
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 3.0e-58 229.2 209 58.4
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.1e-57 227.3 212 52.4
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 2.5e-57 226.1 219 55.7
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 3.3e-57 225.7 221 56.6
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 3.3e-57 225.7 210 56.7
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 4.3e-57 225.3 223 53.8
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 4.3e-57 225.3 221 56.6
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 4.3e-57 225.3 226 54.0
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 4.3e-57 225.3 215 54.9
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 4.3e-57 225.3 209 56.0
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 7.3e-57 224.6 210 57.6
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 4.7e-56 221.9 221 53.8
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 1.1e-55 220.7 215 55.8
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.4e-55 220.3 223 52.5
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 1.8e-55 219.9 209 57.4
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 1.8e-55 219.9 225 52.0
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 1.8e-55 219.9 215 54.9
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 1.8e-55 219.9 147 70.7
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 2.3e-55 219.5 215 54.9
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 3.1e-55 219.2 223 52.5
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 3.1e-55 219.2 215 54.4
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 3.1e-55 219.2 167 64.1
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 5.2e-55 218.4 207 55.6
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 8.9e-55 217.6 208 55.3
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 3.4e-54 215.7 242 50.0
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 5.8e-54 214.9 140 70.7
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 9.9e-54 214.2 227 51.1
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 7.1e-52 208.0 211 53.6
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 2.1e-51 206.5 200 53.5
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 4.6e-51 205.3 135 68.1
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 7.8e-51 204.5 218 51.8
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 7.8e-51 204.5 224 52.7
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 2.3e-50 203.0 184 58.2
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 3.0e-50 202.6 243 47.3
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 3.0e-50 202.6 222 51.8
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 1.1e-49 200.7 219 52.1
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 1.9e-49 199.9 207 49.8
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 1.9e-49 199.9 151 61.6
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 7.3e-49 198.0 194 55.2
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 9.5e-49 197.6 198 56.6
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 3.6e-48 195.7 213 51.2
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 4.7e-48 195.3 183 57.4
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 6.2e-48 194.9 136 66.9
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 8.1e-48 194.5 193 51.8
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 8.1e-48 194.5 213 50.2
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 8.9e-47 191.0 209 50.2
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 1.2e-46 190.7 213 49.3
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 4.4e-46 188.7 215 48.4
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 7.6e-46 188.0 182 53.3
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 7.6e-46 188.0 219 50.2
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 9.9e-46 187.6 161 55.9
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.7e-45 186.8 213 48.8
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 2.4e-44 183.0 211 48.3
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 9.2e-44 181.0 212 49.1
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 4.6e-43 178.7 127 64.6
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 1.3e-42 177.2 189 53.4
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 2.5e-41 172.9 223 46.2
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 3.3e-41 172.6 167 51.5
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 5.6e-41 171.8 216 50.0
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 1.3e-40 170.6 217 43.8
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 2.8e-40 169.5 123 62.6
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 6.2e-40 168.3 209 45.0
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 5.3e-39 165.2 160 51.9
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 3.4e-38 162.5 209 43.5
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 1.7e-37 160.2 118 60.2
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 2.9e-37 159.5 132 60.6
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 8.4e-37 157.9 216 47.2
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 1.2e-35 154.1 150 56.7
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 2.1e-35 153.3 160 48.8
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 1.7e-34 150.2 263 38.4
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 1.8e-31 140.2 82 73.2
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 4.9e-29 132.1 88 68.2
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 8.4e-29 131.3 63 98.4
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 8.1e-24 114.8 54 98.1
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 4.9e-21 105.5 52 94.2
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 1.2e-06 57.8 112 40.2
AT4G04330 Arabidopsis thaliana HOM05D007052 ORTHO05D008871 1.5e-06 57.4 134 31.3


User provided reference genes

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