Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36497 Brassica carinata HOM05D018745 ORTHO05D012464 2.4e-82 308.9 167 100.0
A10p19590 Brassica napus HOM05D018745 ORTHO05D012464 5.3e-26 121.7 179 48.0
BraA10t44034Z Brassica rapa HOM05D018745 ORTHO05D012464 1.2e-25 120.6 190 49.5
BolC9t58449H Brassica oleracea HOM05D018745 ORTHO05D012464 5.9e-25 118.2 194 47.9
BcaC04g19428 Brassica carinata HOM05D018745 ORTHO05D012464 7.7e-25 117.9 194 49.0
C09p55810 Brassica napus HOM05D018745 ORTHO05D012464 7.7e-25 117.9 194 47.9
Sp6g24050 Schrenkiella parvula HOM05D001268 ORTHO05D001577 1.4e-21 107.1 133 54.1
BNapus_Darmor_BZH_scaffold_38p01630 Brassica napus HOM05D001268 ORTHO05D012464 1.1e-20 104.0 174 47.1
Thhalv10015868m.g Eutrema salsugineum HOM05D001268 ORTHO05D012464 1.1e-20 104.0 192 46.4
A02p06210 Brassica napus HOM05D001268 ORTHO05D012464 1.3e-19 100.5 174 44.8
BraA02t05570Z Brassica rapa HOM05D001268 ORTHO05D012464 1.3e-19 100.5 174 44.8
BolC3t13631H Brassica oleracea HOM05D001268 ORTHO05D012464 1.4e-18 97.1 173 44.5
C03p11590 Brassica napus HOM05D001268 ORTHO05D012464 4.1e-18 95.5 173 43.9
BcaC03g13759 Brassica carinata HOM05D001268 ORTHO05D012464 7.0e-18 94.7 112 52.7
BolC2t07038H Brassica oleracea HOM05D001268 ORTHO05D012464 7.0e-18 94.7 112 52.7
A03p10070 Brassica napus HOM05D001268 ORTHO05D012464 1.2e-17 94.0 172 43.0
BraA03t10318Z Brassica rapa HOM05D001268 ORTHO05D012464 1.7e-16 90.1 173 42.2
AL6G31930 Arabidopsis lyrata HOM05D001268 ORTHO05D012464 8.5e-16 87.8 191 42.9
BcaB05g22850 Brassica carinata HOM05D001268 ORTHO05D012464 1.1e-15 87.4 113 53.1
AT5G20370 Arabidopsis thaliana HOM05D001268 ORTHO05D012464 1.6e-14 83.6 185 40.0
Carub.0006s1876 Capsella rubella HOM05D001268 ORTHO05D012464 4.0e-13 79.0 188 41.5
CARHR192470 Cardamine hirsuta HOM05D001268 ORTHO05D012464 1.5e-12 77.0 172 39.0
BcaNung02280 Brassica carinata HOM05D001268 ORTHO05D001577 5.9e-09 65.1 151 34.4
BolC7t44784H Brassica oleracea HOM05D001268 ORTHO05D001577 5.9e-09 65.1 151 34.4
C07p42550 Brassica napus HOM05D001268 ORTHO05D001577 1.0e-08 64.3 141 34.0
AT5G25280 Arabidopsis thaliana HOM05D001268 ORTHO05D001577 5.0e-08 62.0 126 34.9
THA.LOC104799741 Tarenaya hassleriana HOM05D001268 ORTHO05D001577 5.0e-08 62.0 155 36.8
Lalb_Chr22g0350761 Lupinus albus HOM05D001268 ORTHO05D001577 8.5e-08 61.2 115 40.9
A06p36000 Brassica napus HOM05D001268 ORTHO05D001577 1.1e-07 60.8 153 33.3
BraA06t26524Z Brassica rapa HOM05D001268 ORTHO05D001577 1.1e-07 60.8 153 33.3
arahy.Tifrunner.gnm1.ann1.F94VN9 Arachis hypogaea HOM05D001268 ORTHO05D001577 1.9e-07 60.1 132 32.6
arahy.Tifrunner.gnm1.ann1.J3NPFC Arachis hypogaea HOM05D001268 ORTHO05D001577 1.9e-07 60.1 132 32.6
BcaNung03211 Brassica carinata HOM05D001268 ORTHO05D001577 3.2e-07 59.3 155 32.9
Carub.0006s2310 Capsella rubella HOM05D001268 ORTHO05D001577 4.2e-07 58.9 131 33.6
BcaNung01910 Brassica carinata HOM05D001268 ORTHO05D001577 5.5e-07 58.5 158 32.9
Carub.0006s0959 Capsella rubella HOM05D001268 ORTHO05D001577 5.5e-07 58.5 154 32.5
AL6G36970 Arabidopsis lyrata HOM05D001268 ORTHO05D001577 9.4e-07 57.8 126 34.1
BcaB01g06319 Brassica carinata HOM05D001268 ORTHO05D001577 9.4e-07 57.8 131 33.6
C03p05600 Brassica napus HOM05D001268 ORTHO05D001577 9.4e-07 57.8 131 33.6
BolC3t13070H Brassica oleracea HOM05D001268 ORTHO05D001577 9.4e-07 57.8 131 33.6
BcaC03g13349 Brassica carinata HOM05D001268 ORTHO05D001577 1.2e-06 57.4 115 36.5
Sed0006914 Sechium edule HOM05D001268 ORTHO05D001577 1.2e-06 57.4 133 31.6
C02p04850 Brassica napus HOM05D001268 ORTHO05D001577 1.6e-06 57.0 109 38.5
AL6G21720 Arabidopsis lyrata HOM05D001268 ORTHO05D001577 2.1e-06 56.6 115 35.7
AT5G11090 Arabidopsis thaliana HOM05D001268 ORTHO05D001577 2.1e-06 56.6 115 35.7
BcaB04g19794 Brassica carinata HOM05D001268 ORTHO05D001577 2.1e-06 56.6 131 33.6
BcaNung05611 Brassica carinata HOM05D001268 ORTHO05D001577 2.1e-06 56.6 131 33.6
Sp2g22250 Schrenkiella parvula HOM05D001268 ORTHO05D001577 2.1e-06 56.6 153 33.3
Thecc.09G194200 Theobroma cacao HOM05D001268 ORTHO05D001577 2.1e-06 56.6 133 31.6
A02p00830 Brassica napus HOM05D001268 ORTHO05D001577 3.6e-06 55.8 109 37.6
A09p06220 Brassica napus HOM05D001268 ORTHO05D001577 3.6e-06 55.8 154 31.8
BolC2t06443H Brassica oleracea HOM05D001268 ORTHO05D001577 3.6e-06 55.8 109 37.6
BraA02t05066Z Brassica rapa HOM05D001268 ORTHO05D001577 3.6e-06 55.8 109 37.6
BraA09t36266Z Brassica rapa HOM05D001268 ORTHO05D001577 3.6e-06 55.8 154 31.8
CsaV3_2G032230 Cucumis sativus L. HOM05D001268 ORTHO05D001577 3.6e-06 55.8 163 34.4
Thhalv10004807m.g Eutrema salsugineum HOM05D001268 ORTHO05D001577 3.6e-06 55.8 153 32.0
Actinidia04235 Actinidia chinensis HOM05D001268 ORTHO05D001577 4.7e-06 55.5 128 32.0
Aa31LG3G16060 Aethionema arabicum HOM05D001268 ORTHO05D001577 4.7e-06 55.5 115 35.7
CARHR202210 Cardamine hirsuta HOM05D001268 ORTHO05D001577 4.7e-06 55.5 109 36.7
Gohir.D05G013700 Gossypium hirsutum HOM05D001268 ORTHO05D001577 4.7e-06 55.5 164 29.3
Gorai.009G013700 Gossypium raimondii HOM05D001268 ORTHO05D001577 4.7e-06 55.5 164 29.3
Lj3g0008933 Lotus japonicus HOM05D001268 ORTHO05D001577 4.7e-06 55.5 115 34.8
Nitab4.5_0002329g0150 Nicotiana tabacum HOM05D001268 ORTHO05D001577 4.7e-06 55.5 160 30.0
A03p04870 Brassica napus HOM05D001268 ORTHO05D001577 6.1e-06 55.1 124 33.9
BraA03t09826Z Brassica rapa HOM05D001268 ORTHO05D001577 6.1e-06 55.1 124 33.9
Gohir.A06G051500 Gossypium hirsutum HOM05D001268 ORTHO05D001577 6.1e-06 55.1 164 31.1
Gohir.D06G050700 Gossypium hirsutum HOM05D001268 ORTHO05D001577 6.1e-06 55.1 164 31.1
Solyc03g117290.1 Solanum lycopersicum HOM05D001268 ORTHO05D001577 8.0e-06 54.7 126 34.1
Sopen03g036180 Solanum pennellii HOM05D001268 ORTHO05D001577 8.0e-06 54.7 126 34.1


User provided reference genes

Program Settings