Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36482 Brassica carinata HOM05D001813 ORTHO05D008124 7.1e-78 293.9 152 100.0
A10p19010 Brassica napus HOM05D001813 ORTHO05D008124 1.9e-67 259.2 149 91.9
BraA10t43979Z Brassica rapa HOM05D001813 ORTHO05D008124 6.3e-66 254.2 149 90.6
C09p55020 Brassica napus HOM05D001813 ORTHO05D008124 1.4e-65 253.1 149 91.3
BolC9t58365H Brassica oleracea HOM05D001813 ORTHO05D008124 1.4e-65 253.1 149 91.3
BcaC04g19501 Brassica carinata HOM05D001813 ORTHO05D008124 6.9e-65 250.8 149 90.6
Carub.0006s1936 Capsella rubella HOM05D001813 ORTHO05D008124 3.0e-60 235.3 149 81.2
CARHR191810 Cardamine hirsuta HOM05D001813 ORTHO05D008124 1.1e-59 233.4 149 79.9
AL6G32610 Arabidopsis lyrata HOM05D001813 ORTHO05D008124 1.6e-58 229.6 149 79.2
Thhalv10013841m.g Eutrema salsugineum HOM05D001813 ORTHO05D008124 7.7e-56 220.7 149 75.8
AT5G21060 Arabidopsis thaliana HOM05D001813 ORTHO05D008124 1.3e-55 219.9 149 78.5
Sp6g23480 Schrenkiella parvula HOM05D001813 ORTHO05D008124 1.7e-55 219.5 149 77.9
THA.LOC104810965 Tarenaya hassleriana HOM05D001813 ORTHO05D008124 1.0e-52 210.3 149 72.5
Aa31LG1G13710 Aethionema arabicum HOM05D001813 ORTHO05D008124 2.4e-49 199.1 149 70.5
Duzib168G1187 Durio zibethinus HOM05D001813 ORTHO05D008124 3.4e-48 195.3 149 67.8
Thecc.09G336900 Theobroma cacao HOM05D001813 ORTHO05D008124 4.5e-48 194.9 149 69.1
Gohir.A03G035300 Gossypium hirsutum HOM05D001813 ORTHO05D008124 7.7e-48 194.1 149 67.8
Gohir.D03G132900 Gossypium hirsutum HOM05D001813 ORTHO05D008124 1.7e-47 193.0 149 67.1
Gorai.003G140000 Gossypium raimondii HOM05D001813 ORTHO05D008124 1.7e-47 193.0 149 67.1
Atru.chr3.2923 Acer truncatum HOM05D001813 ORTHO05D008124 2.2e-47 192.6 149 66.4
Cpa.g.sc103.70 Carica papaya HOM05D001813 ORTHO05D008124 1.1e-46 190.3 149 65.8
Ciclev10031821m.g Citrus clementina HOM05D001813 ORTHO05D008124 4.7e-45 184.9 149 65.8
Dinv05236 Davidia involucrata HOM05D001813 ORTHO05D008124 4.7e-45 184.9 147 65.3
Sabra04G0133000 Salix brachista HOM05D001813 ORTHO05D008124 6.1e-45 184.5 149 64.4
Ciclev10033902m.g Citrus clementina HOM05D001813 ORTHO05D008124 7.9e-45 184.1 149 65.1
Potri.004G196200 Populus trichocarpa HOM05D001813 ORTHO05D008124 7.9e-45 184.1 149 64.4
CSS0030952 Camellia sinensis var. sinensis HOM05D001813 ORTHO05D008124 1.0e-44 183.7 148 62.8
MD11G1179300 Malus domestica HOM05D001813 ORTHO05D008124 1.8e-44 183.0 148 64.2
Nn7g37283 Nelumbo nucifera HOM05D001813 ORTHO05D008124 1.8e-44 183.0 152 63.8
PGR119G1182 Punica granatum HOM05D001813 ORTHO05D008124 2.3e-44 182.6 149 65.1
RcHm_v2.0_Chr5g0049661 Rosa chinensis HOM05D001813 ORTHO05D008124 3.0e-44 182.2 148 65.5
HPP92_018006 Vanilla planifolia HOM05D001813 ORTHO05D008124 8.8e-44 180.6 149 61.1
FAN21G3701 Fragaria x ananassa HOM05D001813 ORTHO05D008124 1.5e-43 179.9 150 64.7
Actinidia07014 Actinidia chinensis HOM05D001813 ORTHO05D008124 2.0e-43 179.5 149 61.7
Prupe.5G009800 Prunus persica HOM05D001813 ORTHO05D008124 7.4e-43 177.6 148 61.5
CiPaw.13G120200 Carya illinoinensis HOM05D001813 ORTHO05D008124 9.7e-43 177.2 149 62.4
GSVIVG01037466001 Vitis vinifera HOM05D001813 ORTHO05D008124 1.3e-42 176.8 149 63.8
Manes.04G055488 Manihot esculenta HOM05D001813 ORTHO05D008124 1.7e-42 176.4 149 62.4
PGSC0003DMG400027401 Solanum tuberosum HOM05D001813 ORTHO05D008124 2.8e-42 175.6 146 65.8
Solyc11g072010.3 Solanum lycopersicum HOM05D001813 ORTHO05D008124 3.7e-42 175.3 146 64.4
FAN16G2170 Fragaria x ananassa HOM05D001813 ORTHO05D008124 4.8e-42 174.9 150 63.3
Sed0003336 Sechium edule HOM05D001813 ORTHO05D008124 4.8e-42 174.9 149 61.1
Sopen11g029670 Solanum pennellii HOM05D001813 ORTHO05D008124 4.8e-42 174.9 146 64.4
FAN11G0469 Fragaria x ananassa HOM05D001813 ORTHO05D008124 1.1e-41 173.7 150 63.3
FAN25G0391 Fragaria x ananassa HOM05D001813 ORTHO05D008124 1.1e-41 173.7 150 62.0
CsaV3_1G042050 Cucumis sativus L. HOM05D001813 ORTHO05D008124 1.4e-41 173.3 149 62.4
TAR623G0200 Trochodendron aralioides HOM05D001813 ORTHO05D008124 1.8e-41 172.9 147 61.2
FvH4_3g27120 Fragaria vesca HOM05D001813 ORTHO05D008124 3.1e-41 172.2 148 63.5
Cc01_g07600 Coffea canephora HOM05D001813 ORTHO05D008124 4.1e-41 171.8 149 60.4
Sc06g0006200 Simmondsia chinensis HOM05D001813 ORTHO05D008124 5.3e-41 171.4 149 59.7
Lj2A924G26 Lonicera japonica HOM05D001813 ORTHO05D008124 7.0e-41 171.0 163 59.5
TWI31G1397 Tripterygium wilfordii HOM05D001813 ORTHO05D008124 7.0e-41 171.0 149 60.4
Glyma.20G053200 Glycine max HOM05D001813 ORTHO05D008124 1.2e-40 170.2 149 61.1
Lalb_Chr02g0158501 Lupinus albus HOM05D001813 ORTHO05D008124 1.2e-40 170.2 149 59.7
Lj2C922G2 Lonicera japonica HOM05D001813 ORTHO05D008124 2.6e-40 169.1 163 58.9
PSO675G1710 Papaver somniferum HOM05D001813 ORTHO05D008124 2.6e-40 169.1 150 56.7
QL01p020357 Quercus lobata HOM05D001813 ORTHO05D008124 2.6e-40 169.1 149 59.1
CAN.G280.22 Capsicum annuum HOM05D001813 ORTHO05D008124 5.9e-40 167.9 146 62.3
Rhsim13G0201100 Rhododendron simsii HOM05D001813 ORTHO05D008124 5.9e-40 167.9 149 57.7
MBI19_g40249_MAGBIO Magnolia biondii HOM05D001813 ORTHO05D008124 7.7e-40 167.5 139 62.6
MBI19_g32309_MAGBIO Magnolia biondii HOM05D001813 ORTHO05D008124 2.9e-39 165.6 139 61.9
SHI04312 Sapria himalayana HOM05D001813 ORTHO05D008124 2.9e-39 165.6 164 56.1
TPR.G19398 Trifolium pratense HOM05D001813 ORTHO05D008124 3.8e-39 165.2 149 57.7
Lj6g0025568 Lotus japonicus HOM05D001813 ORTHO05D008124 8.5e-39 164.1 149 57.7
Os11g0128800 Oryza sativa ssp. japonica HOM05D001813 ORTHO05D008124 8.5e-39 164.1 143 58.0
EL10Ac7g16223 Beta vulgaris HOM05D001813 ORTHO05D008124 1.5e-38 163.3 150 61.3
DCAR_002126 Daucus carota HOM05D001813 ORTHO05D008124 1.9e-38 162.9 141 61.0
Os12g0125400 Oryza sativa ssp. japonica HOM05D001813 ORTHO05D008124 3.2e-38 162.2 143 57.3
Phvul.L003537 Phaseolus vulgaris HOM05D001813 ORTHO05D008124 3.2e-38 162.2 149 56.4
Psat5g109280 Pisum sativum HOM05D001813 ORTHO05D008124 4.2e-38 161.8 149 56.4
Eucgr.J00623 Eucalyptus grandis HOM05D001813 ORTHO05D008124 5.5e-38 161.4 150 60.0
Zm00001eb405410 Zea mays HOM05D001813 ORTHO05D008124 9.4e-38 160.6 143 58.0
arahy.Tifrunner.gnm1.ann1.876Z5Z Arachis hypogaea HOM05D001813 ORTHO05D008124 2.1e-37 159.5 149 57.7
arahy.Tifrunner.gnm1.ann1.TY5MIX Arachis hypogaea HOM05D001813 ORTHO05D008124 2.1e-37 159.5 149 57.7
Ca_16236_v3 Cicer arietinum L. HOM05D001813 ORTHO05D008124 2.7e-37 159.1 149 56.4
VMungo0540G0768 Vigna mungo HOM05D001813 ORTHO05D008124 2.7e-37 159.1 141 58.9
Medtr3g079330 Medicago truncatula HOM05D001813 ORTHO05D008124 3.6e-37 158.7 149 56.4
SGA_v2.0_scaffold79G25520 Striga asiatica HOM05D001813 ORTHO05D008124 8.0e-37 157.5 149 56.4
AUR62020171 Chenopodium quinoa HOM05D001813 ORTHO05D008124 5.2e-36 154.8 150 57.3
HanXRQChr03g0084001 Helianthus annuus HOM05D001813 ORTHO05D008124 5.2e-36 154.8 149 56.4
AUR62001609 Chenopodium quinoa HOM05D001813 ORTHO05D008124 6.7e-36 154.5 150 57.3
Hund18828 Selenicereus undatus HOM05D001813 ORTHO05D008124 8.8e-36 154.1 150 58.0
Nitab4.5_0009952g0030 Nicotiana tabacum HOM05D001813 ORTHO05D008124 1.5e-35 153.3 149 56.4
MSTRG.17658 Avicennia marina HOM05D001813 ORTHO05D008124 1.3e-34 150.2 149 53.0
ECA240G4767 Erigeron canadensis HOM05D001813 ORTHO05D008124 1.3e-34 150.2 149 55.7
Migut.N02415 Erythranthe guttata HOM05D001813 ORTHO05D008124 4.8e-34 148.3 150 51.3
Lsat_1_v5_gn_6_79520 Lactuca sativa HOM05D001813 ORTHO05D008124 6.3e-34 147.9 149 54.4
unitig_699.g19161 Utricularia gibba HOM05D001813 ORTHO05D008124 2.4e-33 146.0 150 54.0
SalBow3G4352 Salvia bowleyana HOM05D001813 ORTHO05D008124 5.9e-32 141.4 159 48.4
ATR0068G110 Amborella trichopoda HOM05D001813 ORTHO05D008124 1.3e-31 140.2 149 51.7
COL.COLO4_18373 Corchorus olitorius HOM05D001813 ORTHO05D008124 1.3e-31 140.2 116 64.7
CSS0034856 Camellia sinensis var. sinensis HOM05D001813 ORTHO05D008124 4.2e-30 135.2 116 61.2
ClCG03G014190 Citrullus lanatus HOM05D001813 ORTHO05D008124 7.2e-30 134.4 146 51.4
HPP92_026681 Vanilla planifolia HOM05D001813 ORTHO05D008124 2.7e-29 132.5 114 59.6
CSS0034171 Camellia sinensis var. sinensis HOM05D001813 ORTHO05D008124 1.7e-26 123.2 116 55.2
Nitab4.5_0002567g0070 Nicotiana tabacum HOM05D001813 ORTHO05D008124 5.4e-25 118.2 149 45.0
Peaxi162Scf00217g01216 Petunia axillaris HOM05D001813 ORTHO05D008124 2.0e-24 116.3 149 45.6
vmacro04107 Vaccinium macrocarpon HOM05D001813 ORTHO05D008124 4.5e-24 115.2 117 53.8
Haze_23659 Corylus avellana HOM05D001813 ORTHO05D008124 5.0e-23 111.7 114 56.1
CSS0028925 Camellia sinensis var. sinensis HOM05D001813 ORTHO05D008124 5.7e-19 98.2 116 48.3
SMO364G0184 Selaginella moellendorffii HOM05D001813 ORTHO05D008124 5.7e-19 98.2 149 39.6
CBR_g24080 Chara braunii HOM05D001813 ORTHO05D008124 3.7e-18 95.5 162 40.7
MELO3C029399.2 Cucumis melo HOM05D001813 ORTHO05D008124 8.3e-18 94.4 93 53.8
Ah.08g222780 Amaranthus hybridus HOM05D001813 ORTHO05D008124 1.1e-17 94.0 91 54.9
AagrBONN_evm.TU.Sc2ySwM_228.5806 Anthoceros agrestis HOM05D001813 ORTHO05D008124 1.1e-14 84.0 153 38.6
SMO112G0109 Selaginella moellendorffii HOM05D001813 ORTHO05D008124 1.2e-13 80.5 160 36.9
Oeu032072.1 Olea europaea HOM05D001813 ORTHO05D008124 2.0e-08 63.2 40 72.5
Ah.08g222770 Amaranthus hybridus HOM05D001813 ORTHO05D008124 3.3e-06 55.8 40 65.0
vmacro04108 Vaccinium macrocarpon HOM05D001813 ORTHO05D008124 3.3e-06 55.8 39 66.7


User provided reference genes

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