Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36469 Brassica carinata HOM05D006390 ORTHO05D007899 1.6e-141 506.1 263 100.0
BraA10t43960Z Brassica rapa HOM05D006390 ORTHO05D007899 2.5e-86 322.8 267 71.2
A10p18800 Brassica napus HOM05D006390 ORTHO05D007899 2.7e-85 319.3 225 78.7
BraA03t10358Z Brassica rapa HOM05D006390 ORTHO05D007899 2.2e-79 299.7 229 73.8
A03p10460 Brassica napus HOM05D006390 ORTHO05D007899 3.8e-79 298.9 229 73.8
Carub.0006s1956 Capsella rubella HOM05D006390 ORTHO05D007899 5.0e-79 298.5 229 73.4
AL6G32880 Arabidopsis lyrata HOM05D006390 ORTHO05D007899 1.9e-78 296.6 242 69.8
C03p12030 Brassica napus HOM05D006390 ORTHO05D007899 3.2e-78 295.8 229 72.5
Thhalv10014336m.g Eutrema salsugineum HOM05D006390 ORTHO05D007899 4.2e-78 295.4 229 72.5
BolC3t13674H Brassica oleracea HOM05D006390 ORTHO05D007899 9.4e-78 294.3 229 72.1
C09p54820 Brassica napus HOM05D006390 ORTHO05D007899 3.6e-77 292.4 267 66.3
Sp6g23270 Schrenkiella parvula HOM05D006390 ORTHO05D007899 4.7e-77 292.0 229 72.9
BolC9t58342H Brassica oleracea HOM05D006390 ORTHO05D007899 8.0e-77 291.2 267 65.9
AT5G21920 Arabidopsis thaliana HOM05D006390 ORTHO05D007899 2.3e-76 289.7 229 70.7
BcaB01g04755 Brassica carinata HOM05D006390 ORTHO05D007899 1.3e-74 283.9 229 71.2
Aa31LG1G13500 Aethionema arabicum HOM05D006390 ORTHO05D007899 3.4e-59 232.6 199 65.3
THA.LOC104799578 Tarenaya hassleriana HOM05D006390 ORTHO05D007899 2.7e-56 223.0 212 62.3
CARHR191620 Cardamine hirsuta HOM05D006390 ORTHO05D007899 1.3e-50 204.1 138 80.4
ClCG08G009850 Citrullus lanatus HOM05D006390 ORTHO05D007899 3.0e-39 166.4 229 49.3
Manes.03G053300 Manihot esculenta HOM05D006390 ORTHO05D007899 1.9e-38 163.7 235 47.7
Ciclev10009264m.g Citrus clementina HOM05D006390 ORTHO05D007899 4.3e-38 162.5 232 49.1
COL.COLO4_21143 Corchorus olitorius HOM05D006390 ORTHO05D007899 4.3e-38 162.5 245 46.5
MELO3C011488.2 Cucumis melo HOM05D006390 ORTHO05D007899 9.5e-38 161.4 226 48.2
Atru.chr7.1843 Acer truncatum HOM05D006390 ORTHO05D007899 1.2e-37 161.0 246 48.4
CsaV3_6G031930 Cucumis sativus L. HOM05D006390 ORTHO05D007899 1.2e-37 161.0 230 47.0
Manes.16G085900 Manihot esculenta HOM05D006390 ORTHO05D007899 1.6e-37 160.6 238 47.1
ClCG08G009800 Citrullus lanatus HOM05D006390 ORTHO05D007899 2.8e-37 159.8 238 45.4
Thecc.09G063800 Theobroma cacao HOM05D006390 ORTHO05D007899 4.7e-37 159.1 235 47.7
Cpa.g.sc126.20 Carica papaya HOM05D006390 ORTHO05D007899 6.2e-37 158.7 220 46.4
Rhsim13G0219900 Rhododendron simsii HOM05D006390 ORTHO05D007899 1.8e-36 157.1 241 45.6
Sopen08g017090 Solanum pennellii HOM05D006390 ORTHO05D007899 3.1e-36 156.4 233 49.4
TAR383G0302 Trochodendron aralioides HOM05D006390 ORTHO05D007899 4.0e-36 156.0 231 47.2
Potri.006G220400 Populus trichocarpa HOM05D006390 ORTHO05D007899 6.8e-36 155.2 243 46.9
Peaxi162Scf00486g01019 Petunia axillaris HOM05D006390 ORTHO05D007899 8.9e-36 154.8 238 49.6
Solyc08g061630.3 Solanum lycopersicum HOM05D006390 ORTHO05D007899 8.9e-36 154.8 233 48.9
GSVIVG01035473001 Vitis vinifera HOM05D006390 ORTHO05D007899 1.5e-35 154.1 229 47.2
Dinv22938 Davidia involucrata HOM05D006390 ORTHO05D007899 2.0e-35 153.7 252 42.1
Nn8g38656 Nelumbo nucifera HOM05D006390 ORTHO05D007899 2.0e-35 153.7 231 46.3
Glyma.04G056000 Glycine max HOM05D006390 ORTHO05D007899 3.4e-35 152.9 191 51.3
Gohir.D07G019200 Gossypium hirsutum HOM05D006390 ORTHO05D007899 4.4e-35 152.5 228 49.1
Cfa017867 Carpinus fangiana HOM05D006390 ORTHO05D007899 5.8e-35 152.1 237 44.3
Haze_18300 Corylus avellana HOM05D006390 ORTHO05D007899 5.8e-35 152.1 237 44.3
Hma1.2p1_0836F.1_g225960 Hydrangea macrophylla HOM05D006390 ORTHO05D007899 7.6e-35 151.8 248 44.4
Sed0001574 Sechium edule HOM05D006390 ORTHO05D007899 9.9e-35 151.4 229 47.2
VMungo1309G2672 Vigna mungo HOM05D006390 ORTHO05D007899 9.9e-35 151.4 198 48.5
AUR62020590 Chenopodium quinoa HOM05D006390 ORTHO05D007899 1.7e-34 150.6 245 44.5
Cc08_g01110 Coffea canephora HOM05D006390 ORTHO05D007899 1.7e-34 150.6 215 47.0
Gohir.A07G019400 Gossypium hirsutum HOM05D006390 ORTHO05D007899 2.2e-34 150.2 236 47.9
Sabra06G0170200 Salix brachista HOM05D006390 ORTHO05D007899 2.2e-34 150.2 244 45.5
CANSAT25G0657 Cannabis sativa HOM05D006390 ORTHO05D007899 2.9e-34 149.8 205 50.2
Actinidia25689 Actinidia chinensis HOM05D006390 ORTHO05D007899 3.8e-34 149.4 236 44.5
CSS0002038 Camellia sinensis var. sinensis HOM05D006390 ORTHO05D007899 3.8e-34 149.4 202 48.0
Sc09g0010120 Simmondsia chinensis HOM05D006390 ORTHO05D007899 3.8e-34 149.4 183 51.9
Glyma.06G056200 Glycine max HOM05D006390 ORTHO05D007899 4.9e-34 149.1 210 47.6
PSO063G4734 Papaver somniferum HOM05D006390 ORTHO05D007899 4.9e-34 149.1 231 45.9
Nitab4.5_0008422g0020 Nicotiana tabacum HOM05D006390 ORTHO05D007899 8.4e-34 148.3 224 49.1
Phvul.009G082300 Phaseolus vulgaris HOM05D006390 ORTHO05D007899 8.4e-34 148.3 197 49.2
Gorai.001G019900 Gossypium raimondii HOM05D006390 ORTHO05D007899 1.1e-33 147.9 229 48.9
AUR62009077 Chenopodium quinoa HOM05D006390 ORTHO05D007899 1.4e-33 147.5 245 44.5
MD15G1049500 Malus domestica HOM05D006390 ORTHO05D007899 1.4e-33 147.5 258 44.6
QL02p017058 Quercus lobata HOM05D006390 ORTHO05D007899 1.4e-33 147.5 232 46.6
Duzib187G1133 Durio zibethinus HOM05D006390 ORTHO05D007899 1.9e-33 147.1 228 47.4
FvH4_2g30940 Fragaria vesca HOM05D006390 ORTHO05D007899 5.4e-33 145.6 221 44.8
Lj7A221T35 Lonicera japonica HOM05D006390 ORTHO05D007899 5.4e-33 145.6 200 46.5
PSO421G0578 Papaver somniferum HOM05D006390 ORTHO05D007899 7.1e-33 145.2 230 44.3
Lj1g0012601 Lotus japonicus HOM05D006390 ORTHO05D007899 1.2e-32 144.4 203 49.3
Hund19420 Selenicereus undatus HOM05D006390 ORTHO05D007899 2.1e-32 143.7 237 42.2
Aqoxy7G01041 Aquilegia oxysepala HOM05D006390 ORTHO05D007899 3.5e-32 142.9 243 44.4
PGSC0003DMG402018816 Solanum tuberosum HOM05D006390 ORTHO05D007899 3.5e-32 142.9 147 60.5
SGA_v2.0_scaffold64G21890 Striga asiatica HOM05D006390 ORTHO05D007899 3.5e-32 142.9 197 51.8
TWI63G0478 Tripterygium wilfordii HOM05D006390 ORTHO05D007899 3.5e-32 142.9 198 49.5
EL10Ac2g03777 Beta vulgaris HOM05D006390 ORTHO05D007899 6.0e-32 142.1 227 44.5
FAN24G3066 Fragaria x ananassa HOM05D006390 ORTHO05D007899 6.0e-32 142.1 226 44.7
Prupe.1G403800 Prunus persica HOM05D006390 ORTHO05D007899 7.8e-32 141.7 235 45.1
ECA234G3179 Erigeron canadensis HOM05D006390 ORTHO05D007899 1.0e-31 141.4 170 52.9
Migut.A00074 Erythranthe guttata HOM05D006390 ORTHO05D007899 1.0e-31 141.4 207 46.4
SalBow1G6552 Salvia bowleyana HOM05D006390 ORTHO05D007899 1.0e-31 141.4 240 44.6
RcHm_v2.0_Chr6g0311911 Rosa chinensis HOM05D006390 ORTHO05D007899 1.7e-31 140.6 236 43.6
CiPaw.15G091600 Carya illinoinensis HOM05D006390 ORTHO05D007899 3.0e-31 139.8 238 44.1
Nitab4.5_0000446g0130 Nicotiana tabacum HOM05D006390 ORTHO05D007899 3.0e-31 139.8 142 60.6
Ca_15833_v3 Cicer arietinum L. HOM05D006390 ORTHO05D007899 3.9e-31 139.4 191 48.7
Eucgr.C00730 Eucalyptus grandis HOM05D006390 ORTHO05D007899 3.9e-31 139.4 251 43.4
Lsat_1_v5_gn_5_79481 Lactuca sativa HOM05D006390 ORTHO05D007899 5.1e-31 139.0 238 43.3
Medtr3g105100 Medicago truncatula HOM05D006390 ORTHO05D007899 5.1e-31 139.0 195 46.2
Psat5g030440 Pisum sativum HOM05D006390 ORTHO05D007899 5.1e-31 139.0 181 48.6
CAN.G567.81 Capsicum annuum HOM05D006390 ORTHO05D007899 8.7e-31 138.3 198 51.5
vmacro04145 Vaccinium macrocarpon HOM05D006390 ORTHO05D007899 8.7e-31 138.3 190 47.9
FAN20G0978 Fragaria x ananassa HOM05D006390 ORTHO05D007899 1.1e-30 137.9 208 46.2
HanXRQChr10g0305261 Helianthus annuus HOM05D006390 ORTHO05D007899 1.5e-30 137.5 211 46.4
Lsat_1_v5_gn_7_58320 Lactuca sativa HOM05D006390 ORTHO05D007899 1.9e-30 137.1 236 42.4
Lalb_Chr08g0244791 Lupinus albus HOM05D006390 ORTHO05D007899 3.3e-30 136.3 210 47.1
PGR031G3115 Punica granatum HOM05D006390 ORTHO05D007899 5.6e-30 135.6 236 46.2
unitig_4.g30333 Utricularia gibba HOM05D006390 ORTHO05D007899 7.3e-30 135.2 199 45.7
Oeu022304.1 Olea europaea HOM05D006390 ORTHO05D007899 9.6e-30 134.8 129 61.2
MBI13_g42819_MAGBIO Magnolia biondii HOM05D006390 ORTHO05D007899 1.2e-29 134.4 145 57.2
FAN27G3252 Fragaria x ananassa HOM05D006390 ORTHO05D007899 1.6e-29 134.0 190 48.9
SGA_v2.0_scaffold20G09157 Striga asiatica HOM05D006390 ORTHO05D007899 2.8e-29 133.3 232 43.1
HPP92_009411 Vanilla planifolia HOM05D006390 ORTHO05D007899 6.2e-29 132.1 146 57.5
SEGI_09813 Sequoiadendron giganteum HOM05D006390 ORTHO05D007899 1.4e-28 131.0 148 55.4
SEGI_33134 Sequoiadendron giganteum HOM05D006390 ORTHO05D007899 1.4e-28 131.0 148 55.4
ATR0598G016 Amborella trichopoda HOM05D006390 ORTHO05D007899 3.1e-28 129.8 179 48.0
Aqoxy7G01043 Aquilegia oxysepala HOM05D006390 ORTHO05D007899 3.1e-28 129.8 146 54.8
DCAR_001232 Daucus carota HOM05D006390 ORTHO05D007899 4.0e-28 129.4 158 54.4
Zm00001eb005830 Zea mays HOM05D006390 ORTHO05D007899 4.0e-28 129.4 147 55.1
arahy.Tifrunner.gnm1.ann1.J6KHV2 Arachis hypogaea HOM05D006390 ORTHO05D007899 5.2e-28 129.0 229 45.4
arahy.Tifrunner.gnm1.ann1.T21GIU Arachis hypogaea HOM05D006390 ORTHO05D007899 2.0e-27 127.1 229 45.0
Os03g0178200 Oryza sativa ssp. japonica HOM05D006390 ORTHO05D007899 3.4e-27 126.3 166 54.2
CBR_g19741 Chara braunii HOM05D006390 ORTHO05D007899 1.4e-25 120.9 126 54.0
Pp3c10_13690 Physcomitrium patens HOM05D006390 ORTHO05D007899 3.2e-25 119.8 103 59.2
Mapoly0050s0098 Marchantia polymorpha HOM05D006390 ORTHO05D007899 9.3e-25 118.2 131 52.7
Pp3c3_30150 Physcomitrium patens HOM05D006390 ORTHO05D007899 1.0e-23 114.8 103 56.3
MD08G1071700 Malus domestica HOM05D006390 ORTHO05D007899 2.3e-23 113.6 146 50.7
Cre12.g557050 Chlamydomonas reinhardtii HOM05D006390 ORTHO05D007899 1.9e-22 110.5 147 47.6
MCO11G319 Micromonas commoda HOM05D006390 ORTHO05D007899 2.1e-21 107.1 105 55.2
Psat1g041000 Pisum sativum HOM05D006390 ORTHO05D007899 2.8e-21 106.7 98 61.2
PRCOL_00002735 Prasinoderma coloniale HOM05D006390 ORTHO05D007899 1.8e-20 104.0 118 47.5
SMO172G0039 Selaginella moellendorffii HOM05D006390 ORTHO05D007899 3.4e-19 99.8 108 50.9
CARHR191610 Cardamine hirsuta HOM05D006390 ORTHO05D007899 8.4e-18 95.1 65 72.3
unitig_748.g8236 Utricularia gibba HOM05D006390 ORTHO05D007899 2.1e-16 90.5 158 42.4
TPR.G3559 Trifolium pratense HOM05D006390 ORTHO05D007899 3.0e-15 86.7 87 55.2
Gohir.A11G142100 Gossypium hirsutum HOM05D003967 ORTHO05D004531 6.0e-08 62.4 184 31.0
Pp3c14_5410 Physcomitrium patens HOM05D003967 ORTHO05D004531 1.3e-07 61.2 77 46.8
ClCG08G005430 Citrullus lanatus HOM05D006390 ORTHO05D007899 1.8e-07 60.8 43 69.8
Gohir.D11G148400 Gossypium hirsutum HOM05D003967 ORTHO05D004531 2.3e-07 60.5 184 30.4
Gorai.007G159100 Gossypium raimondii HOM05D003967 ORTHO05D004531 2.3e-07 60.5 184 30.4
Pp3c10_6170 Physcomitrium patens HOM05D003967 ORTHO05D004531 2.3e-07 60.5 77 45.5
Duzib211G0344 Durio zibethinus HOM05D003967 ORTHO05D004531 5.1e-07 59.3 177 28.2
Rhsim01G0072900 Rhododendron simsii HOM05D003967 ORTHO05D004531 1.1e-06 58.2 88 43.2
vmacro02812 Vaccinium macrocarpon HOM05D003967 ORTHO05D004531 1.1e-06 58.2 75 45.3
SMO361G0364 Selaginella moellendorffii HOM05D003967 ORTHO05D004531 1.5e-06 57.8 77 40.3
DCAR_003383 Daucus carota HOM05D003967 ORTHO05D004531 2.5e-06 57.0 100 42.0
Rhsim01G0073700 Rhododendron simsii HOM05D003967 ORTHO05D004531 2.5e-06 57.0 154 33.8
ATR0598G008 Amborella trichopoda HOM05D003967 ORTHO05D004531 3.3e-06 56.6 77 45.5
AagrBONN_evm.TU.Sc2ySwM_362.1274 Anthoceros agrestis HOM05D006390 ORTHO05D007899 3.3e-06 56.6 45 60.0
Aqoxy7G02205 Aquilegia oxysepala HOM05D003967 ORTHO05D004531 3.3e-06 56.6 77 45.5
MSTRG.17973 Avicennia marina HOM05D003967 ORTHO05D004531 3.3e-06 56.6 202 29.2
Lj2P1118T62 Lonicera japonica HOM05D003967 ORTHO05D004531 3.3e-06 56.6 90 41.1
CDE05G3051 Ceratophyllum demersum HOM05D004870 ORTHO05D006061 4.3e-06 56.2 124 37.1
MELO3C022654.2 Cucumis melo HOM05D003967 ORTHO05D004531 4.3e-06 56.2 95 42.1
Oeu003635.1 Olea europaea HOM05D003967 ORTHO05D004531 4.3e-06 56.2 203 31.5
TAR362G0123 Trochodendron aralioides HOM05D003967 ORTHO05D004531 4.3e-06 56.2 77 44.2
CsaV3_3G030630 Cucumis sativus L. HOM05D003967 ORTHO05D004531 5.6e-06 55.8 75 46.7
GSVIVG01037857001 Vitis vinifera HOM05D003967 ORTHO05D004531 5.6e-06 55.8 77 45.5
Cfa013303 Carpinus fangiana HOM05D003967 ORTHO05D004531 7.4e-06 55.5 77 45.5
CiPaw.13G054600 Carya illinoinensis HOM05D003967 ORTHO05D004531 7.4e-06 55.5 77 45.5
ClCG07G014610 Citrullus lanatus HOM05D003967 ORTHO05D004531 7.4e-06 55.5 77 45.5
Haze_21784 Corylus avellana HOM05D003967 ORTHO05D004531 7.4e-06 55.5 77 45.5
DCAR_022129 Daucus carota HOM05D003967 ORTHO05D004531 7.4e-06 55.5 96 41.7
Hma1.2p1_0161F.1_g071320 Hydrangea macrophylla HOM05D003967 ORTHO05D004531 7.4e-06 55.5 77 44.2
PSO824G0043 Papaver somniferum HOM05D003967 ORTHO05D004531 7.4e-06 55.5 77 44.2
PSO832G2093 Papaver somniferum HOM05D003967 ORTHO05D004531 7.4e-06 55.5 77 44.2
Potri.002G250200 Populus trichocarpa HOM05D003967 ORTHO05D004531 7.4e-06 55.5 77 45.5
QL08p061776 Quercus lobata HOM05D003967 ORTHO05D004531 7.4e-06 55.5 77 45.5
QL09p045921 Quercus lobata HOM05D003967 ORTHO05D004531 7.4e-06 55.5 77 45.5
QL09p045954 Quercus lobata HOM05D003967 ORTHO05D004531 7.4e-06 55.5 77 45.5
Sabra02G0190500 Salix brachista HOM05D003967 ORTHO05D004531 7.4e-06 55.5 77 45.5
Sed0026883 Sechium edule HOM05D003967 ORTHO05D004531 7.4e-06 55.5 77 45.5
Sc25g0005680 Simmondsia chinensis HOM05D003967 ORTHO05D004531 7.4e-06 55.5 77 44.2
TWI36G1715 Tripterygium wilfordii HOM05D003967 ORTHO05D004531 7.4e-06 55.5 77 45.5
TAR365G1067 Trochodendron aralioides HOM05D003967 ORTHO05D004531 7.4e-06 55.5 77 44.2
arahy.Tifrunner.gnm1.ann1.NYJU0L Arachis hypogaea HOM05D003967 ORTHO05D004531 9.6e-06 55.1 77 45.5
Carub.0007s1281 Capsella rubella HOM05D003967 ORTHO05D004531 9.6e-06 55.1 77 46.8
CARHR078570 Cardamine hirsuta HOM05D003967 ORTHO05D004531 9.6e-06 55.1 77 46.8
Ciclev10033520m.g Citrus clementina HOM05D003967 ORTHO05D004531 9.6e-06 55.1 77 45.5
Cc01_g16220 Coffea canephora HOM05D003967 ORTHO05D004531 9.6e-06 55.1 77 44.2
Duzib133G1035 Durio zibethinus HOM05D003967 ORTHO05D004531 9.6e-06 55.1 171 28.7
FAN02G3806 Fragaria x ananassa HOM05D003967 ORTHO05D004531 9.6e-06 55.1 77 45.5
FAN09G2378 Fragaria x ananassa HOM05D003967 ORTHO05D004531 9.6e-06 55.1 77 45.5
Gohir.D07G095000 Gossypium hirsutum HOM05D003967 ORTHO05D004531 9.6e-06 55.1 165 30.9
Gorai.001G102300 Gossypium raimondii HOM05D003967 ORTHO05D004531 9.6e-06 55.1 165 30.9
MD09G1163500 Malus domestica HOM05D003967 ORTHO05D004531 9.6e-06 55.1 77 45.5
MD17G1164100 Malus domestica HOM05D003967 ORTHO05D004531 9.6e-06 55.1 77 45.5
PGR031G2843 Punica granatum HOM05D003967 ORTHO05D004531 9.6e-06 55.1 77 45.5
Sp7g09800 Schrenkiella parvula HOM05D003967 ORTHO05D004531 9.6e-06 55.1 77 45.5
Sopen06g034500 Solanum pennellii HOM05D003967 ORTHO05D004531 9.6e-06 55.1 204 30.4


User provided reference genes

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