Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 1.3e-293 1012.3 509 100.0
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 5.2e-274 947.2 507 94.7
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 8.8e-274 946.4 507 94.7
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 8.8e-274 946.4 507 94.7
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 2.8e-267 924.9 507 93.1
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 1.4e-266 922.5 507 92.9
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 5.4e-263 910.6 506 91.7
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 1.9e-260 902.1 503 91.8
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 2.1e-259 898.7 507 90.7
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 1.8e-258 895.6 507 90.5
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 3.4e-257 891.3 507 89.9
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 1.3e-256 889.4 506 90.3
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 1.7e-256 889.0 506 89.3
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 5.4e-255 884.0 509 89.8
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 1.6e-254 882.5 506 89.1
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 4.6e-254 880.9 517 88.2
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 2.3e-253 878.6 506 88.7
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 2.3e-253 878.6 508 88.4
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 1.6e-251 872.5 506 87.2
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 2.1e-251 872.1 506 87.0
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 2.3e-250 868.6 506 87.2
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 4.9e-248 860.9 509 86.8
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 6.4e-248 860.5 498 88.2
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 5.1e-245 850.9 507 85.8
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 1.1e-244 849.7 511 85.3
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 1.1e-239 833.2 504 84.7
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 4.4e-233 811.2 506 80.6
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 1.3e-219 766.5 503 77.1
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 1.4e-218 763.1 543 74.4
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 2.0e-217 759.2 508 75.4
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 2.0e-217 759.2 499 76.6
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 1.9e-215 752.7 497 76.1
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 1.3e-213 746.5 509 74.3
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 5.1e-213 744.6 505 74.5
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 7.4e-212 740.7 500 75.2
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 1.6e-211 739.6 501 73.5
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 3.7e-211 738.4 507 73.8
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 4.8e-211 738.0 506 73.5
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 1.8e-210 736.1 502 73.3
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 1.8e-210 736.1 513 71.9
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 3.1e-210 735.3 503 74.2
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 5.3e-210 734.6 505 74.3
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 9.0e-210 733.8 500 74.4
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 5.8e-209 731.1 494 74.5
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 2.9e-208 728.8 501 73.1
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 2.9e-208 728.8 507 73.4
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 3.8e-208 728.4 497 74.6
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.9e-208 728.0 503 73.4
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 8.4e-208 727.2 501 72.9
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.4e-207 726.5 503 73.2
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.9e-207 726.1 505 71.9
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 1.9e-207 726.1 507 72.2
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 1.9e-207 726.1 507 72.4
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 1.9e-207 726.1 503 72.6
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 1.9e-207 726.1 502 74.3
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 4.2e-207 724.9 499 72.9
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 5.5e-207 724.5 501 72.7
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 7.1e-207 724.2 498 72.9
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 1.2e-206 723.4 504 73.2
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 2.1e-206 722.6 504 73.0
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.7e-206 722.2 503 73.2
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 6.0e-206 721.1 503 71.8
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 7.9e-206 720.7 508 71.7
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 1.3e-205 719.9 504 72.8
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 1.8e-205 719.5 494 72.5
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 3.0e-205 718.8 509 73.1
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 3.0e-205 718.8 509 73.1
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 6.7e-205 717.6 505 71.3
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 6.7e-205 717.6 505 71.3
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 1.1e-204 716.8 504 71.6
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 4.3e-204 714.9 510 71.2
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 7.4e-204 714.1 503 71.8
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 9.7e-204 713.8 492 72.8
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 2.2e-203 712.6 503 71.4
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 6.3e-203 711.1 506 73.1
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 8.2e-203 710.7 495 72.5
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 1.4e-202 709.9 522 69.9
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 3.1e-202 708.8 494 72.1
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 2.6e-201 705.7 503 70.8
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 3.4e-201 705.3 504 70.8
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 4.5e-201 704.9 514 70.0
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 1.0e-200 703.7 539 67.9
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 1.3e-200 703.4 501 70.3
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 2.2e-200 702.6 494 71.5
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 2.2e-200 702.6 490 71.8
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 2.9e-200 702.2 492 72.2
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 1.4e-199 699.9 502 70.3
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.8e-197 693.0 501 70.5
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 5.1e-197 691.4 529 68.8
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 1.1e-196 690.3 494 70.4
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 1.1e-196 690.3 494 70.4
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 1.5e-196 689.9 496 70.0
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 7.4e-196 687.6 496 69.4
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 2.8e-195 685.6 496 69.8
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 2.4e-194 682.6 498 68.9
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 3.4e-193 678.7 499 68.3
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 1.6e-190 669.8 489 69.1
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 2.1e-190 669.5 507 68.0
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 3.0e-189 665.6 502 68.3
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 8.8e-189 664.1 513 66.1
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 6.3e-187 657.9 502 67.7
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 2.0e-185 652.9 497 66.0
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 1.3e-184 650.2 508 66.1
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 3.2e-183 645.6 525 64.8
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 4.2e-183 645.2 468 69.7
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 4.2e-183 645.2 500 65.2
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 2.7e-182 642.5 498 66.5
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 1.0e-181 640.6 501 64.3
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 2.3e-181 639.4 482 67.4
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 2.0e-180 636.3 495 65.1
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 5.7e-180 634.8 509 66.6
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 5.7e-180 634.8 502 64.7
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 1.7e-179 633.3 581 59.4
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 2.8e-179 632.5 509 62.7
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 8.5e-176 620.9 508 65.0
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 7.2e-175 617.8 493 64.5
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 9.4e-175 617.5 516 60.1
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 1.2e-174 617.1 499 64.9
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 1.4e-173 613.6 500 65.4
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 1.4e-173 613.6 500 61.4
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 8.2e-171 604.4 499 62.3
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 1.2e-169 600.5 493 63.9
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.9e-168 595.9 401 74.1
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 8.5e-168 594.3 502 62.4
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 2.3e-165 586.3 378 81.2
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 4.1e-162 575.5 515 61.2
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 6.8e-157 558.1 382 74.3
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 1.2e-156 557.4 513 57.3
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 3.5e-153 545.8 488 58.6
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 7.8e-153 544.7 466 58.8
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 1.4e-149 533.9 357 74.5
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 2.6e-148 529.6 397 67.5
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 1.7e-147 526.9 314 86.6
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.7e-147 526.9 398 68.8
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 2.4e-146 523.1 548 54.0
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 8.0e-142 508.1 355 74.1
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 2.3e-141 506.5 376 71.3
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 2.0e-140 503.4 394 68.0
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 1.2e-129 467.6 366 66.9
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 6.6e-128 461.8 471 53.5
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.4e-117 427.6 409 58.2
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 4.0e-117 426.0 324 70.1
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.4e-114 416.8 282 73.4
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 1.6e-113 414.1 280 75.4
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 4.8e-110 402.5 268 75.7
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 3.3e-87 326.6 233 72.1
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 3.6e-81 306.6 251 66.5
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 3.7e-78 296.6 475 37.7
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.4e-74 284.6 197 74.1
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.5e-74 283.9 181 74.6
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 8.8e-72 275.4 207 70.0
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 2.6e-68 263.8 140 94.3
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 6.3e-62 242.7 200 62.0
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 5.7e-55 219.5 230 52.6
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 2.0e-52 211.1 134 76.1
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 1.3e-51 208.4 257 45.5
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 2.9e-51 207.2 153 70.6
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 5.5e-50 203.0 136 73.5
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 1.4e-45 188.3 136 69.1
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 2.4e-45 187.6 265 46.8
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 2.1e-41 174.5 114 72.8
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 6.1e-41 172.9 125 70.4
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 5.4e-37 159.8 114 69.3
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 8.6e-35 152.5 166 50.6
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 5.2e-32 143.3 103 68.0
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 5.2e-32 143.3 103 68.0
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 8.0e-25 119.4 69 81.2
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 6.8e-24 116.3 63 87.3
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 1.3e-22 112.1 63 82.5
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 2.9e-22 110.9 91 65.9
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 1.4e-21 108.6 106 55.7
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 2.4e-21 107.8 65 83.1
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 4.1e-21 107.1 72 69.4
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 7.1e-21 106.3 67 76.1
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 2.1e-20 104.8 65 80.0
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 6.0e-20 103.2 65 78.5
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 3.9e-19 100.5 65 81.5
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 1.6e-17 95.1 77 67.5
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 5.8e-15 86.7 185 34.1
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 1.3e-11 75.5 48 62.5
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 3.6e-09 67.4 48 68.8
BcaC03g13887 Brassica carinata HOM05D003643 ORTHO05D032482 4.0e-08 63.9 37 83.8
C02p10890 Brassica napus HOM05D003643 ORTHO05D032482 1.5e-07 62.0 36 83.3
BolC2t07159H Brassica oleracea HOM05D003643 ORTHO05D032482 1.5e-07 62.0 36 83.3
RcHm_v2.0_Chr5g0019801 Rosa chinensis HOM05D003643 ORTHO05D005001 1.5e-07 62.0 48 75.0


User provided reference genes

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