Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36412 Brassica carinata HOM05D007000 ORTHO05D009020 0.0e+00 1539.6 834 100.0
BraA10t43904Z Brassica rapa HOM05D007000 ORTHO05D009020 0.0e+00 1331.6 802 90.4
BolC9t58265H Brassica oleracea HOM05D007000 ORTHO05D009020 0.0e+00 1325.1 809 89.4
A10p18280 Brassica napus HOM05D007000 ORTHO05D009020 0.0e+00 1324.3 815 89.2
C09p53930 Brassica napus HOM05D007000 ORTHO05D009020 0.0e+00 1310.8 835 86.6
Sp6g22700 Schrenkiella parvula HOM05D007000 ORTHO05D009020 0.0e+00 1284.2 818 84.2
AL6G33670 Arabidopsis lyrata HOM05D007000 ORTHO05D009020 0.0e+00 1264.6 804 83.6
Thhalv10012645m.g Eutrema salsugineum HOM05D007000 ORTHO05D009020 0.0e+00 1256.1 826 81.6
CARHR190940 Cardamine hirsuta HOM05D007000 ORTHO05D009020 0.0e+00 1236.1 822 81.3
AT5G22640 Arabidopsis thaliana HOM05D007000 ORTHO05D009020 0.0e+00 1227.6 809 81.1
Carub.0006s2036 Capsella rubella HOM05D007000 ORTHO05D009020 0.0e+00 1165.2 726 83.7
Aa31LG1G12980 Aethionema arabicum HOM05D007000 ORTHO05D009020 0.0e+00 1103.6 814 74.3
QL01p013748 Quercus lobata HOM05D007000 ORTHO05D009020 4.5e-278 961.4 798 65.4
FAN21G0141 Fragaria x ananassa HOM05D007000 ORTHO05D009020 6.8e-274 947.6 806 63.4
FvH4_3g29910 Fragaria vesca HOM05D007000 ORTHO05D009020 8.9e-274 947.2 807 62.5
FAN11G3012 Fragaria x ananassa HOM05D007000 ORTHO05D009020 8.9e-274 947.2 807 62.5
Gohir.A07G107200 Gossypium hirsutum HOM05D007000 ORTHO05D009020 2.2e-272 942.6 792 64.9
Eucgr.J00424 Eucalyptus grandis HOM05D007000 ORTHO05D009020 2.8e-272 942.2 795 62.9
Prupe.6G118900 Prunus persica HOM05D007000 ORTHO05D009020 8.3e-272 940.6 802 62.2
Gohir.A07G107100 Gossypium hirsutum HOM05D007000 ORTHO05D009020 2.4e-271 939.1 788 64.2
RcHm_v2.0_Chr5g0055251 Rosa chinensis HOM05D007000 ORTHO05D009020 2.4e-271 939.1 811 61.9
MD03G1134600 Malus domestica HOM05D007000 ORTHO05D009020 5.4e-271 937.9 817 62.7
Potri.009G149100 Populus trichocarpa HOM05D007000 ORTHO05D009020 1.6e-270 936.4 815 60.5
GSVIVG01031401001 Vitis vinifera HOM05D007000 ORTHO05D009020 3.5e-270 935.3 805 63.6
Gorai.001G119400 Gossypium raimondii HOM05D007000 ORTHO05D009020 1.6e-267 926.4 794 64.0
Gohir.D07G111200 Gossypium hirsutum HOM05D007000 ORTHO05D009020 1.4e-266 923.3 789 64.1
Sabra09G0117700 Salix brachista HOM05D007000 ORTHO05D009020 3.1e-266 922.2 815 58.8
Sed0022610 Sechium edule HOM05D007000 ORTHO05D009020 4.0e-266 921.8 802 61.8
Gorai.001G119500 Gossypium raimondii HOM05D007000 ORTHO05D009020 6.8e-266 921.0 789 64.0
FAN16G1383 Fragaria x ananassa HOM05D007000 ORTHO05D009020 1.5e-265 919.8 822 60.7
ClCG02G021900 Citrullus lanatus HOM05D007000 ORTHO05D009020 8.3e-264 914.1 801 61.9
Duzib150G0107 Durio zibethinus HOM05D007000 ORTHO05D009020 1.4e-263 913.3 793 64.9
Dinv12525 Davidia involucrata HOM05D007000 ORTHO05D009020 1.2e-262 910.2 708 66.7
PGR119G0747 Punica granatum HOM05D007000 ORTHO05D009020 1.2e-262 910.2 810 62.1
CiPaw.14G103700 Carya illinoinensis HOM05D007000 ORTHO05D009020 6.0e-262 907.9 799 61.7
Solyc11g066870.3 Solanum lycopersicum HOM05D007000 ORTHO05D009020 6.2e-259 897.9 739 63.1
TWI75G0014 Tripterygium wilfordii HOM05D007000 ORTHO05D009020 3.1e-258 895.6 803 60.9
PGSC0003DMG400026534 Solanum tuberosum HOM05D007000 ORTHO05D009020 1.2e-257 893.6 740 62.3
Sopen11g026580 Solanum pennellii HOM05D007000 ORTHO05D009020 2.6e-257 892.5 756 61.9
CSS0049563 Camellia sinensis var. sinensis HOM05D007000 ORTHO05D009020 7.5e-257 891.0 577 73.8
CAN.G644.32 Capsicum annuum HOM05D007000 ORTHO05D009020 7.5e-257 891.0 779 59.4
MSTRG.18732 Avicennia marina HOM05D007000 ORTHO05D009020 9.8e-257 890.6 705 62.7
Nn6g35052 Nelumbo nucifera HOM05D007000 ORTHO05D009020 9.8e-257 890.6 787 62.0
Nitab4.5_0001453g0060 Nicotiana tabacum HOM05D007000 ORTHO05D009020 4.1e-255 885.2 680 66.6
Migut.D02336 Erythranthe guttata HOM05D007000 ORTHO05D009020 1.6e-254 883.2 681 64.5
Oeu050179.1 Olea europaea HOM05D007000 ORTHO05D009020 7.8e-254 880.9 750 62.0
Manes.04G009000 Manihot esculenta HOM05D007000 ORTHO05D009020 1.0e-253 880.6 806 61.3
COL.COLO4_19295 Corchorus olitorius HOM05D007000 ORTHO05D009020 1.1e-252 877.1 688 68.8
CANSAT54G2429 Cannabis sativa HOM05D007000 ORTHO05D009020 2.3e-250 869.4 787 57.1
Nitab4.5_0007303g0050 Nicotiana tabacum HOM05D007000 ORTHO05D009020 3.1e-250 869.0 724 62.8
TAR623G0382 Trochodendron aralioides HOM05D007000 ORTHO05D009020 3.1e-250 869.0 785 59.1
Cc01_g09830 Coffea canephora HOM05D007000 ORTHO05D009020 5.2e-250 868.2 731 61.0
Ciclev10027793m.g Citrus clementina HOM05D007000 ORTHO05D009020 5.4e-247 858.2 804 59.1
Sc12g0004140 Simmondsia chinensis HOM05D007000 ORTHO05D009020 1.2e-246 857.1 537 72.3
AUR62038302 Chenopodium quinoa HOM05D007000 ORTHO05D009020 7.8e-246 854.4 776 57.2
MELO3C021453.2 Cucumis melo HOM05D007000 ORTHO05D009020 7.8e-246 854.4 809 57.0
Lj3g0010220 Lotus japonicus HOM05D007000 ORTHO05D009020 1.0e-245 854.0 808 59.3
CsaV3_6G014720 Cucumis sativus L. HOM05D007000 ORTHO05D009020 3.1e-242 842.4 800 58.8
Lalb_Chr24g0395131 Lupinus albus HOM05D007000 ORTHO05D009020 1.2e-241 840.5 799 56.4
AUR62023939 Chenopodium quinoa HOM05D007000 ORTHO05D009020 2.0e-241 839.7 571 70.9
Glyma.13G319300 Glycine max HOM05D007000 ORTHO05D009020 8.4e-240 834.3 788 59.4
Phvul.005G127300 Phaseolus vulgaris HOM05D007000 ORTHO05D009020 6.0e-238 828.2 795 58.9
Glyma.12G181600 Glycine max HOM05D007000 ORTHO05D009020 9.6e-236 820.8 803 58.3
CDE02G4201 Ceratophyllum demersum HOM05D007000 ORTHO05D009020 1.4e-234 817.0 532 70.3
EL10Ac9g21077 Beta vulgaris HOM05D007000 ORTHO05D009020 3.4e-233 812.4 771 60.2
FAN16G0383 Fragaria x ananassa HOM05D007000 ORTHO05D009020 3.4e-233 812.4 886 53.7
Aqoxy1G00944 Aquilegia oxysepala HOM05D007000 ORTHO05D009020 5.8e-233 811.6 761 56.8
VMungo1080G1560 Vigna mungo HOM05D007000 ORTHO05D009020 5.8e-233 811.6 806 57.2
unitig_747.g21960 Utricularia gibba HOM05D007000 ORTHO05D009020 4.9e-232 808.5 690 62.8
PSO339G5428 Papaver somniferum HOM05D007000 ORTHO05D009020 1.2e-230 803.9 807 56.3
ECA238G2375 Erigeron canadensis HOM05D007000 ORTHO05D009020 2.8e-227 792.7 796 58.0
PSO063G0097 Papaver somniferum HOM05D007000 ORTHO05D009020 8.1e-227 791.2 806 56.3
HanXRQChr14g0451961 Helianthus annuus HOM05D007000 ORTHO05D009020 3.1e-226 789.3 797 56.7
Hund00783 Selenicereus undatus HOM05D007000 ORTHO05D009020 9.9e-225 784.3 808 56.4
DCAR_012163 Daucus carota HOM05D007000 ORTHO05D009020 1.3e-224 783.9 766 55.5
Ah.01g004600 Amaranthus hybridus HOM05D007000 ORTHO05D009020 1.7e-224 783.5 819 56.2
ATR0820G103 Amborella trichopoda HOM05D007000 ORTHO05D009020 6.0e-222 775.0 741 57.1
arahy.Tifrunner.gnm1.ann1.0Z9K9L Arachis hypogaea HOM05D007000 ORTHO05D009020 2.5e-220 769.6 878 53.1
Medtr2g084835 Medicago truncatula HOM05D007000 ORTHO05D009020 7.4e-220 768.1 790 51.9
arahy.Tifrunner.gnm1.ann1.K5NCJW Arachis hypogaea HOM05D007000 ORTHO05D009020 1.6e-219 766.9 885 52.3
SGA_v2.0_scaffold193G40708 Striga asiatica HOM05D007000 ORTHO05D009020 1.6e-219 766.9 700 60.9
Lsat_1_v5_gn_2_96400 Lactuca sativa HOM05D007000 ORTHO05D009020 3.1e-218 762.7 688 61.8
Ca_01679_v3 Cicer arietinum L. HOM05D007000 ORTHO05D009020 1.6e-214 750.4 793 54.4
Lj1A221T47 Lonicera japonica HOM05D007000 ORTHO05D009020 1.3e-213 747.3 717 57.2
TPR.G32364 Trifolium pratense HOM05D007000 ORTHO05D009020 2.8e-211 739.6 808 53.8
Psat5g254800 Pisum sativum HOM05D007000 ORTHO05D009020 1.3e-195 687.6 808 49.4
Thecc.09G291900 Theobroma cacao HOM05D007000 ORTHO05D009020 1.7e-184 650.6 611 59.7
Peaxi162Scf00789g00534 Petunia axillaris HOM05D007000 ORTHO05D009020 2.1e-166 590.5 509 61.3
Haze_23451 Corylus avellana HOM05D007000 ORTHO05D009020 1.4e-157 561.2 391 67.5
HPP92_011511 Vanilla planifolia HOM05D007000 ORTHO05D009020 6.2e-150 535.8 343 70.0
Pp3c14_2260 Physcomitrium patens HOM05D007000 ORTHO05D009020 4.0e-149 533.1 451 57.6
Mapoly0021s0145 Marchantia polymorpha HOM05D007000 ORTHO05D009020 1.6e-145 521.2 515 50.7
Actinidia37100 Actinidia chinensis HOM05D007000 ORTHO05D009020 1.6e-137 494.6 809 43.0
Gohir.D07G111100 Gossypium hirsutum HOM05D007000 ORTHO05D009020 1.7e-136 491.1 577 55.1
SEGI_23936 Sequoiadendron giganteum HOM05D007000 ORTHO05D009020 1.9e-135 487.6 662 44.7
HPP92_011563 Vanilla planifolia HOM05D007000 ORTHO05D009020 1.2e-126 458.4 261 77.4
Atru.chr3.3385 Acer truncatum HOM05D007000 ORTHO05D009020 4.0e-125 453.4 508 51.8
ScUNg0001440 Simmondsia chinensis HOM05D007000 ORTHO05D009020 4.3e-119 433.3 269 72.9
AagrBONN_evm.TU.Sc2ySwM_344.1665 Anthoceros agrestis HOM05D007000 ORTHO05D009020 4.6e-105 386.7 344 53.8
HPP92_011520 Vanilla planifolia HOM05D007000 ORTHO05D009020 1.3e-102 378.6 418 47.1
BcaC04g19594 Brassica carinata HOM05D007000 ORTHO05D009020 5.3e-101 373.2 183 95.1
Cpa.g.sc47.64 Carica papaya HOM05D007000 ORTHO05D009020 4.3e-95 353.6 344 52.9
Atru.chr3.3384 Acer truncatum HOM05D007000 ORTHO05D009020 5.9e-92 343.2 188 81.4
Peaxi162Scf00789g00535 Petunia axillaris HOM05D007000 ORTHO05D009020 6.9e-85 319.7 195 73.3
MD11G1157100 Malus domestica HOM05D007000 ORTHO05D009020 2.6e-84 317.8 436 52.8
Oeu050178.1 Olea europaea HOM05D007000 ORTHO05D009020 4.2e-74 283.9 378 50.5
Cpa.g.sc47.63 Carica papaya HOM05D007000 ORTHO05D009020 6.5e-51 206.8 300 55.3
TWI75G1888 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 5.4e-37 160.6 126 64.3
CBR_g22485 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-31 142.9 434 28.3
Actinidia35447 Actinidia chinensis HOM05D007000 ORTHO05D009020 1.3e-30 139.4 81 75.3
HPP92_011562 Vanilla planifolia HOM05D007000 ORTHO05D009020 8.3e-22 110.2 105 46.7
SEGI_03022 Sequoiadendron giganteum HOM05D007000 ORTHO05D009020 4.7e-17 94.4 72 52.8
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.4e-16 92.8 75 57.3


User provided reference genes

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