Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36333 Brassica carinata HOM05D002419 ORTHO05D008128 2.0e-95 352.4 176 100.0
A10p17550 Brassica napus HOM05D002419 ORTHO05D005441 2.0e-79 299.3 165 91.5
BraA10t43836Z Brassica rapa HOM05D002419 ORTHO05D005441 1.8e-77 292.7 165 89.7
BolC9t58170H Brassica oleracea HOM05D002419 ORTHO05D005441 3.1e-77 292.0 165 89.1
BcaC04g19693 Brassica carinata HOM05D002419 ORTHO05D008128 7.0e-77 290.8 163 90.2
C09p52960 Brassica napus HOM05D002419 ORTHO05D005441 1.0e-75 287.0 160 89.4
BraA03t10435Z Brassica rapa HOM05D002419 ORTHO05D008128 2.2e-75 285.8 167 86.2
A03p11220 Brassica napus HOM05D002419 ORTHO05D008128 3.2e-74 282.0 167 86.2
BolC3t13754H Brassica oleracea HOM05D002419 ORTHO05D005441 2.7e-73 278.9 169 83.4
Thhalv10014838m.g Eutrema salsugineum HOM05D002419 ORTHO05D008128 8.0e-73 277.3 163 84.0
CARHR274000 Cardamine hirsuta HOM05D002419 ORTHO05D008128 1.8e-72 276.2 167 84.4
Sp6g21940 Schrenkiella parvula HOM05D002419 ORTHO05D008128 6.8e-72 274.2 164 84.1
Carub.0008s2104 Capsella rubella HOM05D002419 ORTHO05D008128 7.5e-71 270.8 168 83.9
AT5G60335 Arabidopsis thaliana HOM05D002419 ORTHO05D008128 1.8e-69 266.2 168 82.1
AL8G36950 Arabidopsis lyrata HOM05D002419 ORTHO05D008128 2.9e-67 258.8 160 81.9
Aa31LG1G12400 Aethionema arabicum HOM05D002419 ORTHO05D005441 2.6e-63 245.7 168 74.4
THA.LOC104814842 Tarenaya hassleriana HOM05D002419 ORTHO05D008128 4.4e-63 245.0 159 76.7
QL01p037215 Quercus lobata HOM05D002419 ORTHO05D008128 1.0e-51 207.2 156 63.5
CiPaw.13G107000 Carya illinoinensis HOM05D002419 ORTHO05D008128 1.3e-51 206.8 142 70.4
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 1.1e-50 203.8 159 64.2
Duzib170G1173 Durio zibethinus HOM05D002419 ORTHO05D008128 3.3e-50 202.2 152 67.1
Atru.chr3.3691 Acer truncatum HOM05D002419 ORTHO05D008128 1.2e-49 200.3 169 58.0
Haze_23915 Corylus avellana HOM05D002419 ORTHO05D008128 1.2e-49 200.3 156 62.8
Cpa.g.sc139.69 Carica papaya HOM05D002419 ORTHO05D008128 2.1e-49 199.5 144 68.8
CSS0035547 Camellia sinensis var. sinensis HOM05D002419 ORTHO05D008128 3.6e-49 198.7 154 63.0
TWI75G1733 Tripterygium wilfordii HOM05D002419 ORTHO05D008128 4.7e-49 198.4 156 64.1
Gohir.D07G120700 Gossypium hirsutum HOM05D002419 ORTHO05D008128 2.3e-48 196.1 152 61.8
Gorai.001G129900 Gossypium raimondii HOM05D002419 ORTHO05D008128 5.2e-48 194.9 141 66.0
Actinidia03711 Actinidia chinensis HOM05D002419 ORTHO05D008128 6.8e-48 194.5 140 65.0
Manes.11G141200 Manihot esculenta HOM05D002419 ORTHO05D008128 1.2e-47 193.7 156 60.3
Thecc.09G260200 Theobroma cacao HOM05D002419 ORTHO05D008128 2.0e-47 193.0 139 67.6
Potri.006G133800 Populus trichocarpa HOM05D002419 ORTHO05D008128 4.4e-47 191.8 134 64.9
RcHm_v2.0_Chr5g0060661 Rosa chinensis HOM05D002419 ORTHO05D008128 9.8e-47 190.7 144 63.2
Sabra06G0105100 Salix brachista HOM05D002419 ORTHO05D008128 2.2e-46 189.5 159 57.9
COL.COLO4_32908 Corchorus olitorius HOM05D002419 ORTHO05D008128 2.9e-46 189.1 142 66.2
vmacro14413 Vaccinium macrocarpon HOM05D002419 ORTHO05D008128 2.9e-46 189.1 147 66.0
Gohir.A07G116300 Gossypium hirsutum HOM05D002419 ORTHO05D008128 6.4e-46 188.0 152 59.9
LjContig00564g0025850 Lotus japonicus HOM05D002419 ORTHO05D008128 6.4e-46 188.0 150 62.7
MD11G1129900 Malus domestica HOM05D002419 ORTHO05D008128 6.4e-46 188.0 156 59.6
FAN25G2109 Fragaria x ananassa HOM05D002419 ORTHO05D008128 8.3e-46 187.6 142 62.0
Solyc06g075000.3 Solanum lycopersicum HOM05D002419 ORTHO05D008128 1.1e-45 187.2 141 63.8
Sopen06g031430 Solanum pennellii HOM05D002419 ORTHO05D008128 1.1e-45 187.2 141 63.8
Rhsim01G0213200 Rhododendron simsii HOM05D002419 ORTHO05D008128 1.4e-45 186.8 154 63.6
CsaV3_6G021630 Cucumis sativus L. HOM05D002419 ORTHO05D008128 2.4e-45 186.0 140 62.1
FAN16G1578 Fragaria x ananassa HOM05D002419 ORTHO05D008128 2.4e-45 186.0 142 62.0
COL.COLO4_25247 Corchorus olitorius HOM05D002419 ORTHO05D008128 3.2e-45 185.7 142 66.2
Prupe.6G094800 Prunus persica HOM05D002419 ORTHO05D008128 4.1e-45 185.3 155 58.7
Lalb_Chr25g0283021 Lupinus albus HOM05D002419 ORTHO05D008128 9.2e-45 184.1 142 62.0
PGSC0003DMG400012002 Solanum tuberosum HOM05D002419 ORTHO05D008128 9.2e-45 184.1 141 63.1
Sabra03G0090700 Salix brachista HOM05D002419 ORTHO05D008128 1.2e-44 183.7 134 63.4
Lj2A1017T34 Lonicera japonica HOM05D002419 ORTHO05D008128 1.6e-44 183.3 140 64.3
Nitab4.5_0000106g0340 Nicotiana tabacum HOM05D002419 ORTHO05D008128 1.6e-44 183.3 140 63.6
Ca_06160_v3 Cicer arietinum L. HOM05D002419 ORTHO05D008128 2.0e-44 183.0 142 61.3
Glyma.14G041000 Glycine max HOM05D002419 ORTHO05D008128 2.0e-44 183.0 147 61.2
Medtr5g087960 Medicago truncatula HOM05D002419 ORTHO05D008128 2.7e-44 182.6 143 62.9
Dinv29347 Davidia involucrata HOM05D002419 ORTHO05D008128 3.5e-44 182.2 139 66.2
DCAR_006043 Daucus carota HOM05D002419 ORTHO05D008128 6.0e-44 181.4 139 61.2
CAN.G2109.1 Capsicum annuum HOM05D002419 ORTHO05D008128 7.8e-44 181.0 147 60.5
Rhsim01G0213400 Rhododendron simsii HOM05D002419 ORTHO05D008128 1.0e-43 180.6 154 61.7
arahy.Tifrunner.gnm1.ann1.AUHN72 Arachis hypogaea HOM05D002419 ORTHO05D008128 1.3e-43 180.3 139 61.9
Glyma.02G275000 Glycine max HOM05D002419 ORTHO05D008128 2.3e-43 179.5 145 60.7
Psat2g021880 Pisum sativum HOM05D002419 ORTHO05D008128 2.3e-43 179.5 144 61.1
PGR102G0399 Punica granatum HOM05D002419 ORTHO05D008128 3.0e-43 179.1 142 64.1
GSVIVG01025134001 Vitis vinifera HOM05D002419 ORTHO05D008128 3.0e-43 179.1 152 58.6
ClCG02G020940 Citrullus lanatus HOM05D002419 ORTHO05D008128 5.0e-43 178.3 141 58.9
AUR62027574 Chenopodium quinoa HOM05D002419 ORTHO05D008128 6.6e-43 177.9 143 62.2
Sc15g0001550 Simmondsia chinensis HOM05D002419 ORTHO05D008128 8.6e-43 177.6 134 64.2
ECA248G1487 Erigeron canadensis HOM05D002419 ORTHO05D008128 1.5e-42 176.8 153 58.2
CANSAT54G1052 Cannabis sativa HOM05D002419 ORTHO05D008128 3.3e-42 175.6 142 61.3
TPR.G11328 Trifolium pratense HOM05D002419 ORTHO05D008128 3.3e-42 175.6 144 57.6
Psat2g022480 Pisum sativum HOM05D002419 ORTHO05D008128 5.6e-42 174.9 144 60.4
VMungo0647G2488 Vigna mungo HOM05D002419 ORTHO05D008128 5.6e-42 174.9 145 59.3
EL10Ac8g19852 Beta vulgaris HOM05D002419 ORTHO05D008128 1.6e-41 173.3 154 57.8
Peaxi162Scf00029g01714 Petunia axillaris HOM05D002419 ORTHO05D008128 2.8e-41 172.6 151 58.3
PSO339G2915 Papaver somniferum HOM05D002419 ORTHO05D008128 4.7e-41 171.8 138 58.7
Cc01_g10710 Coffea canephora HOM05D002419 ORTHO05D008128 6.2e-41 171.4 138 61.6
SalBow7G0817 Salvia bowleyana HOM05D002419 ORTHO05D008128 6.2e-41 171.4 139 56.1
TPR.G11332 Trifolium pratense HOM05D002419 ORTHO05D008128 1.4e-40 170.2 144 59.0
Aqoxy6G01314 Aquilegia oxysepala HOM05D002419 ORTHO05D008128 1.8e-40 169.9 153 52.9
PSO801G0184 Papaver somniferum HOM05D002419 ORTHO05D008128 1.8e-40 169.9 138 58.7
Phvul.008G172000 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 4.0e-40 168.7 147 55.8
Oeu049265.1 Olea europaea HOM05D002419 ORTHO05D008128 5.2e-40 168.3 144 56.9
Phvul.008G206400 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 1.2e-39 167.2 143 57.3
Hund27375 Selenicereus undatus HOM05D002419 ORTHO05D008128 1.2e-39 167.2 146 55.5
Aqoxy2G01471 Aquilegia oxysepala HOM05D002419 ORTHO05D008128 1.5e-39 166.8 142 54.2
TAR633G0359 Trochodendron aralioides HOM05D002419 ORTHO05D008128 5.8e-39 164.9 150 56.0
arahy.Tifrunner.gnm1.ann1.2RF374 Arachis hypogaea HOM05D002419 ORTHO05D008128 9.9e-39 164.1 143 57.3
Lsat_1_v5_gn_1_63680 Lactuca sativa HOM05D002419 ORTHO05D008128 1.3e-38 163.7 138 55.8
HanXRQChr01g0019131 Helianthus annuus HOM05D002419 ORTHO05D008128 3.7e-38 162.2 136 57.4
SHI33804 Sapria himalayana HOM05D002419 ORTHO05D008128 3.7e-38 162.2 156 52.6
Nitab4.5_0000511g0130 Nicotiana tabacum HOM05D002419 ORTHO05D008128 6.4e-38 161.4 111 71.2
Migut.N02582 Erythranthe guttata HOM05D002419 ORTHO05D008128 1.4e-37 160.2 149 52.3
TAR636G2038 Trochodendron aralioides HOM05D002419 ORTHO05D008128 1.4e-37 160.2 141 56.7
MBI04_g27072_MAGBIO Magnolia biondii HOM05D002419 ORTHO05D008128 2.4e-37 159.5 172 51.2
Oeu009377.1 Olea europaea HOM05D002419 ORTHO05D008128 3.2e-37 159.1 144 54.2
TAR636G3373 Trochodendron aralioides HOM05D002419 ORTHO05D008128 3.2e-37 159.1 146 56.2
ATR0680G185 Amborella trichopoda HOM05D002419 ORTHO05D008128 7.1e-37 157.9 132 58.3
Lj2A891T18 Lonicera japonica HOM05D002419 ORTHO05D008128 9.2e-37 157.5 111 66.7
BcaB01g04653 Brassica carinata HOM05D002419 ORTHO05D008128 2.7e-36 156.0 89 86.5
Eucgr.B02468 Eucalyptus grandis HOM05D002419 ORTHO05D008128 4.6e-36 155.2 164 48.2
Oeu049264.1 Olea europaea HOM05D002419 ORTHO05D008128 5.1e-35 151.8 135 54.1
unitig_699.g19262 Utricularia gibba HOM05D001486 ORTHO05D003845 5.1e-35 151.8 138 50.7
FAN11G3570 Fragaria x ananassa HOM05D002273 ORTHO05D008128 1.1e-34 150.6 132 56.1
CDE09G0261 Ceratophyllum demersum HOM05D007330 ORTHO05D008128 1.9e-34 149.8 136 54.4
FvH4_3g33270 Fragaria vesca HOM05D002273 ORTHO05D008128 1.9e-34 149.8 132 56.8
SEGI_36576 Sequoiadendron giganteum HOM05D002419 ORTHO05D008128 2.5e-34 149.4 133 51.9
Ah.01g024490 Amaranthus hybridus HOM05D002419 ORTHO05D008128 7.3e-34 147.9 130 57.7
FAN21G3525 Fragaria x ananassa HOM05D002419 ORTHO05D008128 2.1e-33 146.4 101 66.3
HPP92_005092 Vanilla planifolia HOM05D002419 ORTHO05D008128 1.8e-32 143.3 134 55.2
Zm00001eb211510 Zea mays HOM05D002419 ORTHO05D008128 4.0e-32 142.1 171 43.9
SGA_v2.0_scaffold25G11093 Striga asiatica HOM05D002419 ORTHO05D008128 6.8e-32 141.4 148 49.3
MSTRG.17782 Avicennia marina HOM05D002419 ORTHO05D008128 3.4e-31 139.0 113 57.5
Phvul.008G171900 Phaseolus vulgaris HOM05D002419 ORTHO05D008128 2.1e-28 129.8 153 48.4
Pp3c27_1710 Physcomitrium patens HOM05D002419 ORTHO05D008128 3.3e-26 122.5 127 45.7
BcaB01g04652 Brassica carinata HOM05D000125 ORTHO05D008128 2.8e-25 119.4 79 77.2
CBR_g17117 Chara braunii HOM05D002419 ORTHO05D008128 1.4e-24 117.1 131 41.2
AUR62035785 Chenopodium quinoa HOM05D002419 ORTHO05D008128 1.5e-23 113.6 77 67.5
CARHR181070 Cardamine hirsuta HOM05D002419 ORTHO05D008128 5.8e-23 111.7 65 86.2
Mapoly0013s0067 Marchantia polymorpha HOM05D002419 ORTHO05D008128 1.7e-22 110.2 140 37.9
SMO356G0194 Selaginella moellendorffii HOM05D002419 ORTHO05D008128 8.4e-22 107.8 138 40.6
Zm00001eb088630 Zea mays HOM05D002419 ORTHO05D008128 1.4e-21 107.1 125 45.6
MELO3C025746.2 Cucumis melo HOM05D002419 ORTHO05D008128 3.2e-21 105.9 75 66.7
Sed0027804 Sechium edule HOM05D002419 ORTHO05D008128 3.9e-19 99.0 141 41.1
AagrBONN_evm.TU.Sc2ySwM_228.5883 Anthoceros agrestis HOM05D002419 ORTHO05D008128 9.6e-18 94.4 111 41.4
AagrBONN_evm.TU.Sc2ySwM_228.5888 Anthoceros agrestis HOM05D002419 ORTHO05D008128 9.9e-15 84.3 138 34.8
PRCOL_00002156 Prasinoderma coloniale HOM05D002419 ORTHO05D008128 2.9e-14 82.8 131 36.6
Cre12.g560100 Chlamydomonas reinhardtii HOM05D002419 ORTHO05D008128 3.2e-13 79.3 87 46.0
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 1.2e-12 77.4 89 47.2
MCO16G180 Micromonas commoda HOM05D002419 ORTHO05D008128 3.0e-11 72.8 76 47.4
Ciclev10029934m.g Citrus clementina HOM05D002419 ORTHO05D008128 6.9e-08 61.6 41 63.4


User provided reference genes

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