Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36328 Brassica carinata HOM05D005472 ORTHO05D005897 3.1e-78 295.0 149 100.0
BcaB03g12884 Brassica carinata HOM05D005472 ORTHO05D005897 3.5e-37 158.7 134 64.9
BcaB08g37342 Brassica carinata HOM05D005472 ORTHO05D005897 1.9e-35 152.9 79 97.5
BraA08t34891Z Brassica rapa HOM05D005472 ORTHO05D005897 1.9e-35 152.9 135 62.2
A08p29540 Brassica napus HOM05D005472 ORTHO05D005897 1.1e-33 147.1 134 61.2
Sp1g17770 Schrenkiella parvula HOM05D005472 ORTHO05D005897 6.4e-31 137.9 145 55.9
AL1G32710 Arabidopsis lyrata HOM05D005472 ORTHO05D005897 1.9e-30 136.3 135 55.6
Thhalv10008122m.g Eutrema salsugineum HOM05D005472 ORTHO05D005897 7.1e-30 134.4 138 55.8
BraA07t29336Z Brassica rapa HOM05D005472 ORTHO05D005897 9.2e-30 134.0 145 53.8
CARHR020470 Cardamine hirsuta HOM05D005472 ORTHO05D005897 2.1e-29 132.9 138 54.3
A07p16090 Brassica napus HOM05D005472 ORTHO05D005897 3.0e-28 129.0 146 51.4
C08p19880 Brassica napus HOM05D005472 ORTHO05D005897 3.9e-28 128.6 134 56.0
BolC8t49626H Brassica oleracea HOM05D005472 ORTHO05D005897 3.9e-28 128.6 134 56.0
AT1G19980 Arabidopsis thaliana HOM05D005472 ORTHO05D005897 6.6e-28 127.9 138 54.3
BcaC07g39015 Brassica carinata HOM05D005472 ORTHO05D005897 8.7e-28 127.5 134 56.0
Carub.0001s1951 Capsella rubella HOM05D005472 ORTHO05D005897 2.5e-27 125.9 134 51.5
BcaB03g14419 Brassica carinata HOM05D005472 ORTHO05D005897 4.7e-26 121.7 141 53.2
BolC7t42878H Brassica oleracea HOM05D005472 ORTHO05D005897 8.1e-26 120.9 134 51.5
THA.LOC104809508 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 1.9e-22 109.8 138 47.8
Aa31LG7G4450 Aethionema arabicum HOM05D005472 ORTHO05D005897 3.2e-22 109.0 142 47.9
BcaB03g14348 Brassica carinata HOM05D005472 ORTHO05D005897 5.4e-22 108.2 159 42.1
C07p23450 Brassica napus HOM05D005472 ORTHO05D005897 2.7e-21 105.9 166 43.4
THA.LOC104811410 Tarenaya hassleriana HOM05D005472 ORTHO05D005897 7.6e-16 87.8 136 42.6
Cpa.g.sc26.42 Carica papaya HOM05D005472 ORTHO05D005897 7.1e-14 81.3 149 35.6
Gohir.A05G186500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 9.3e-14 80.9 153 34.0
Gohir.D05G189400 Gossypium hirsutum HOM05D005472 ORTHO05D005897 2.1e-13 79.7 150 33.3
Gorai.009G194600 Gossypium raimondii HOM05D005472 ORTHO05D005897 2.7e-13 79.3 150 33.3
Atru.chr2.2949 Acer truncatum HOM05D005472 ORTHO05D005897 7.9e-13 77.8 133 37.6
Duzib116G0175 Durio zibethinus HOM05D005472 ORTHO05D005897 6.7e-12 74.7 148 34.5
Thecc.08G044600 Theobroma cacao HOM05D005472 ORTHO05D005897 1.9e-11 73.2 153 32.7
Atru.chr13.291 Acer truncatum HOM05D005472 ORTHO05D005897 9.6e-11 70.9 133 36.1
Gohir.A05G257000 Gossypium hirsutum HOM05D005472 ORTHO05D005897 9.6e-11 70.9 150 30.0
Gohir.D05G258500 Gossypium hirsutum HOM05D005472 ORTHO05D005897 3.7e-10 68.9 150 30.7
COL.COLO4_26145 Corchorus olitorius HOM05D005472 ORTHO05D005897 1.1e-09 67.4 145 33.8
Gorai.009G270000 Gossypium raimondii HOM05D005472 ORTHO05D005897 1.1e-09 67.4 150 30.0
Duzib041G0268 Durio zibethinus HOM05D005472 ORTHO05D005897 1.4e-09 67.0 152 32.9
Potri.005G239500 Populus trichocarpa HOM05D005472 ORTHO05D005897 1.4e-09 67.0 145 33.8
MELO3C003750.2 Cucumis melo HOM05D005472 ORTHO05D005897 1.8e-09 66.6 160 30.0
CsaV3_3G045880 Cucumis sativus L. HOM05D005472 ORTHO05D005897 1.8e-09 66.6 160 30.6
QL02p011634 Quercus lobata HOM05D005472 ORTHO05D005897 2.4e-09 66.2 62 50.0
Sabra05G0185100 Salix brachista HOM05D005472 ORTHO05D005897 4.0e-09 65.5 145 32.4
Haze_22634 Corylus avellana HOM05D005472 ORTHO05D005897 5.3e-09 65.1 141 33.3
Migut.C00835 Erythranthe guttata HOM05D005472 ORTHO05D005897 6.9e-09 64.7 142 31.0
ClCG05G018260 Citrullus lanatus HOM05D005472 ORTHO05D005897 2.0e-08 63.2 160 31.2
Manes.18G013500 Manihot esculenta HOM05D005472 ORTHO05D005897 2.0e-08 63.2 147 32.0
Manes.05G147400 Manihot esculenta HOM05D005472 ORTHO05D005897 2.6e-08 62.8 158 32.3
GSVIVG01009906001 Vitis vinifera HOM05D005472 ORTHO05D005897 2.6e-08 62.8 161 32.3
MSTRG.1192 Avicennia marina HOM05D005472 ORTHO05D005897 4.5e-08 62.0 146 30.8
CiPaw.08G066500 Carya illinoinensis HOM05D005472 ORTHO05D005897 4.5e-08 62.0 133 31.6
AUR62033908 Chenopodium quinoa HOM05D005472 ORTHO05D005897 4.5e-08 62.0 59 50.8
Oeu054693.1 Olea europaea HOM05D005472 ORTHO05D005897 4.5e-08 62.0 138 31.2
Prupe.1G365300 Prunus persica HOM05D005472 ORTHO05D005897 4.5e-08 62.0 151 32.5
Sed0019370 Sechium edule HOM05D005472 ORTHO05D005897 5.8e-08 61.6 58 53.4
CiPaw.07G149800 Carya illinoinensis HOM05D005472 ORTHO05D005897 7.6e-08 61.2 145 32.4
CAN.G311.30 Capsicum annuum HOM05D005472 ORTHO05D005897 9.9e-08 60.8 143 32.2
AUR62041912 Chenopodium quinoa HOM05D005472 ORTHO05D005897 9.9e-08 60.8 59 50.8
Ah.00g000180 Amaranthus hybridus HOM05D005472 ORTHO05D005897 1.3e-07 60.5 63 44.4
Potri.002G022200 Populus trichocarpa HOM05D005472 ORTHO05D005897 1.3e-07 60.5 148 33.8
Cfa013951 Carpinus fangiana HOM05D005472 ORTHO05D005897 2.9e-07 59.3 141 31.9
Os04g0117200 Oryza sativa ssp. japonica HOM05D005472 ORTHO05D005897 3.8e-07 58.9 62 46.8
FAN15G2782 Fragaria x ananassa HOM05D005472 ORTHO05D005897 4.9e-07 58.5 96 36.5
Ca_00891_v3 Cicer arietinum L. HOM05D005472 ORTHO05D005897 6.4e-07 58.2 58 48.3
DCAR_023016 Daucus carota HOM05D005472 ORTHO05D005897 6.4e-07 58.2 132 30.3
FvH4_2g38440 Fragaria vesca HOM05D005472 ORTHO05D005897 6.4e-07 58.2 96 35.4
Solyc04g081450.3 Solanum lycopersicum HOM05D005472 ORTHO05D005897 6.4e-07 58.2 143 29.4
Sopen04g035060 Solanum pennellii HOM05D005472 ORTHO05D005897 6.4e-07 58.2 143 29.4
FAN27G2825 Fragaria x ananassa HOM05D005472 ORTHO05D005897 8.4e-07 57.8 136 29.4
Nn1g05892 Nelumbo nucifera HOM05D005472 ORTHO05D005897 8.4e-07 57.8 161 29.2
TWI36G1185 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 8.4e-07 57.8 58 48.3
Lj4A797T57 Lonicera japonica HOM05D005472 ORTHO05D005897 1.4e-06 57.0 142 31.7
RcHm_v2.0_Chr6g0302861 Rosa chinensis HOM05D005472 ORTHO05D005897 1.4e-06 57.0 57 47.4
TWI12G0454 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 1.4e-06 57.0 58 46.6
PSO170G4377 Papaver somniferum HOM05D005472 ORTHO05D005897 1.9e-06 56.6 60 48.3
PGSC0003DMG400009864 Solanum tuberosum HOM05D005472 ORTHO05D005897 1.9e-06 56.6 143 28.7
Glyma.15G134600 Glycine max HOM05D005472 ORTHO05D005897 2.4e-06 56.2 62 45.2
VMungo0540G2141 Vigna mungo HOM05D005472 ORTHO05D005897 3.2e-06 55.8 58 48.3
Glyma.09G028700 Glycine max HOM05D005472 ORTHO05D005897 4.2e-06 55.5 62 43.5
Peaxi162Scf00438g00827 Petunia axillaris HOM05D005472 ORTHO05D005897 4.2e-06 55.5 129 28.7
Hund05189 Selenicereus undatus HOM05D005472 ORTHO05D005897 4.2e-06 55.5 74 40.5
Eucgr.F00587 Eucalyptus grandis HOM05D005472 ORTHO05D005897 5.5e-06 55.1 163 27.6
Lj6g0021117 Lotus japonicus HOM05D005472 ORTHO05D005897 5.5e-06 55.1 56 48.2
PSO700G0202 Papaver somniferum HOM05D005472 ORTHO05D005897 5.5e-06 55.1 68 44.1
Phvul.006G124300 Phaseolus vulgaris HOM05D005472 ORTHO05D005897 5.5e-06 55.1 62 43.5
SalBow7G1801 Salvia bowleyana HOM05D005472 ORTHO05D005897 5.5e-06 55.1 97 30.9
TPR.G15190 Trifolium pratense HOM05D005472 ORTHO05D005897 5.5e-06 55.1 57 45.6
TWI56G0716 Tripterygium wilfordii HOM05D005472 ORTHO05D005897 5.5e-06 55.1 56 50.0
FAN20G3206 Fragaria x ananassa HOM05D005472 ORTHO05D005897 7.1e-06 54.7 136 28.7
unitig_0.g2085 Utricularia gibba HOM05D005472 ORTHO05D005897 7.1e-06 54.7 143 28.7
PGR031G2834 Punica granatum HOM05D005472 ORTHO05D005897 9.3e-06 54.3 58 46.6


User provided reference genes

Program Settings