Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36300 Brassica carinata HOM05D012589 ORTHO05D006350 0.0e+00 1566.2 802 100.0
A10p16240 Brassica napus HOM05D012589 ORTHO05D024353 1.0e-103 382.1 646 43.5
BraA10t43705Z Brassica rapa HOM05D012589 ORTHO05D024353 1.0e-103 382.1 646 43.5
BolC9t57981H Brassica oleracea HOM05D012589 ORTHO05D024353 6.8e-103 379.4 646 43.0
C09p51180 Brassica napus HOM05D012589 ORTHO05D024353 6.4e-101 372.9 647 43.1
BolC3t13849H Brassica oleracea HOM05D005457 ORTHO05D006350 1.2e-96 358.6 656 41.5
A03p11920 Brassica napus HOM05D005457 ORTHO05D006350 2.3e-95 354.4 621 43.3
BcaB01g04624 Brassica carinata HOM05D005457 ORTHO05D006350 3.1e-79 300.8 653 38.4
BraA03t10504Z Brassica rapa HOM05D005457 ORTHO05D006350 2.1e-75 288.1 588 40.3
THA.LOC104799410 Tarenaya hassleriana HOM05D005457 ORTHO05D006350 1.3e-42 179.1 271 47.6
Lj3g0007084 Lotus japonicus HOM05D005457 ORTHO05D006350 4.8e-40 170.6 182 50.0
Gorai.003G125900 Gossypium raimondii HOM05D005457 ORTHO05D006350 1.1e-39 169.5 293 43.3
Ca_19579_v3 Cicer arietinum L. HOM05D005457 ORTHO05D006350 3.1e-39 167.9 182 48.9
BcaB08g36299 Brassica carinata HOM05D012589 ORTHO05D024353 5.3e-39 167.2 395 37.2
ClCG03G001030 Citrullus lanatus HOM05D005457 ORTHO05D006350 5.3e-39 167.2 193 48.2
Nn2g13569 Nelumbo nucifera HOM05D005457 ORTHO05D006350 5.3e-39 167.2 181 47.5
Sed0019872 Sechium edule HOM05D005457 ORTHO05D006350 5.3e-39 167.2 147 55.8
CsaV3_1G035890 Cucumis sativus L. HOM05D005457 ORTHO05D006350 9.0e-39 166.4 173 51.4
Glyma.09G228800 Glycine max HOM05D005457 ORTHO05D006350 9.0e-39 166.4 164 51.2
Gohir.A03G047700 Gossypium hirsutum HOM05D005457 ORTHO05D006350 9.0e-39 166.4 157 53.5
Thecc.09G309000 Theobroma cacao HOM05D005457 ORTHO05D006350 1.2e-38 166.0 187 49.2
arahy.Tifrunner.gnm1.ann1.L17SH6 Arachis hypogaea HOM05D005457 ORTHO05D006350 1.5e-38 165.6 185 47.0
arahy.Tifrunner.gnm1.ann1.U9UY67 Arachis hypogaea HOM05D005457 ORTHO05D006350 1.5e-38 165.6 185 47.0
FAN16G3594 Fragaria x ananassa HOM05D005457 ORTHO05D006350 1.5e-38 165.6 150 54.7
Gohir.A03G047600 Gossypium hirsutum HOM05D005457 ORTHO05D006350 1.5e-38 165.6 293 42.3
Nn2g11331 Nelumbo nucifera HOM05D005457 ORTHO05D006350 1.5e-38 165.6 175 48.6
VMungo1127G1417 Vigna mungo HOM05D005457 ORTHO05D006350 1.5e-38 165.6 181 48.6
FvH4_3g37470 Fragaria vesca HOM05D005457 ORTHO05D006350 2.6e-38 164.9 157 53.5
FAN11G1716 Fragaria x ananassa HOM05D005457 ORTHO05D006350 2.6e-38 164.9 157 53.5
RcHm_v2.0_Chr5g0067371 Rosa chinensis HOM05D005457 ORTHO05D006350 2.6e-38 164.9 180 48.3
Ciclev10027683m.g Citrus clementina HOM05D005457 ORTHO05D006350 3.4e-38 164.5 184 48.4
FAN21G0431 Fragaria x ananassa HOM05D005457 ORTHO05D006350 3.4e-38 164.5 150 54.0
Phvul.011G009900 Phaseolus vulgaris HOM05D005457 ORTHO05D006350 3.4e-38 164.5 157 52.9
Prupe.6G064800 Prunus persica HOM05D005457 ORTHO05D006350 3.4e-38 164.5 185 48.6
Gohir.D03G119400 Gossypium hirsutum HOM05D005457 ORTHO05D006350 5.9e-38 163.7 157 52.9
Gorai.003G125700 Gossypium raimondii HOM05D005457 ORTHO05D006350 5.9e-38 163.7 157 52.9
Atru.chr3.4038 Acer truncatum HOM05D005457 ORTHO05D006350 7.7e-38 163.3 184 47.3
Aqoxy1G00759 Aquilegia oxysepala HOM05D005457 ORTHO05D006350 7.7e-38 163.3 175 46.9
Dinv17076 Davidia involucrata HOM05D005457 ORTHO05D006350 7.7e-38 163.3 185 48.1
Dinv43020 Davidia involucrata HOM05D005457 ORTHO05D006350 7.7e-38 163.3 185 48.1
Dinv43077 Davidia involucrata HOM05D005457 ORTHO05D006350 7.7e-38 163.3 185 48.1
Glyma.12G007800 Glycine max HOM05D005457 ORTHO05D006350 7.7e-38 163.3 164 50.6
Medtr4g037575 Medicago truncatula HOM05D005457 ORTHO05D006350 7.7e-38 163.3 174 47.7
QL01p028955 Quercus lobata HOM05D005457 ORTHO05D006350 7.7e-38 163.3 154 51.9
Sc12g0001060 Simmondsia chinensis HOM05D005457 ORTHO05D006350 7.7e-38 163.3 157 52.2
Potri.001G247100 Populus trichocarpa HOM05D005457 ORTHO05D006350 1.0e-37 162.9 157 51.6
TPR.G3642 Trifolium pratense HOM05D005457 ORTHO05D006350 1.0e-37 162.9 169 50.3
TAR369G0749 Trochodendron aralioides HOM05D005457 ORTHO05D006350 1.0e-37 162.9 175 48.0
vmacro03007 Vaccinium macrocarpon HOM05D005457 ORTHO05D006350 1.0e-37 162.9 157 51.0
Ah.14g082630 Amaranthus hybridus HOM05D005457 ORTHO05D006350 1.7e-37 162.2 147 55.1
Dinv34321 Davidia involucrata HOM05D005457 ORTHO05D006350 1.7e-37 162.2 173 50.3
FAN25G1264 Fragaria x ananassa HOM05D005457 ORTHO05D006350 1.7e-37 162.2 182 48.9
Hma1.2p1_0543F.1_g175290 Hydrangea macrophylla HOM05D005457 ORTHO05D006350 2.2e-37 161.8 180 46.1
HPP92_001490 Vanilla planifolia HOM05D005457 ORTHO05D006350 2.2e-37 161.8 161 50.9
Psat7g154880 Pisum sativum HOM05D005457 ORTHO05D006350 2.9e-37 161.4 174 47.7
Haze_24232 Corylus avellana HOM05D005457 ORTHO05D006350 3.8e-37 161.0 157 50.3
Lalb_Chr01g0000381 Lupinus albus HOM05D005457 ORTHO05D006350 3.8e-37 161.0 179 47.5
Manes.02G123500 Manihot esculenta HOM05D005457 ORTHO05D006350 3.8e-37 161.0 147 55.1
MD03G1079900 Malus domestica HOM05D005457 ORTHO05D006350 5.0e-37 160.6 181 47.0
PSO782G3368 Papaver somniferum HOM05D005457 ORTHO05D006350 5.0e-37 160.6 167 49.1
Hund11609 Selenicereus undatus HOM05D005457 ORTHO05D006350 5.0e-37 160.6 222 42.8
Gohir.D03G119500 Gossypium hirsutum HOM05D005457 ORTHO05D006350 6.5e-37 160.2 277 43.0
Lj2C1073G13 Lonicera japonica HOM05D005457 ORTHO05D006350 1.1e-36 159.5 263 38.8
CSS0049881 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 1.4e-36 159.1 179 46.9
Cpa.g.sc112.89 Carica papaya HOM05D005457 ORTHO05D006350 1.4e-36 159.1 170 50.0
CiPaw.13G084000 Carya illinoinensis HOM05D005457 ORTHO05D006350 1.4e-36 159.1 157 51.6
GSVIVG01024823001 Vitis vinifera HOM05D005457 ORTHO05D006350 1.4e-36 159.1 174 48.9
Sabra09G0028400 Salix brachista HOM05D005457 ORTHO05D006350 1.9e-36 158.7 157 51.0
PSO170G6745 Papaver somniferum HOM05D005457 ORTHO05D006350 2.5e-36 158.3 188 46.3
AUR62001711 Chenopodium quinoa HOM05D005457 ORTHO05D006350 5.5e-36 157.1 182 48.4
Lj1C143T9 Lonicera japonica HOM05D005457 ORTHO05D006350 5.5e-36 157.1 157 49.0
Nitab4.5_0000752g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 5.5e-36 157.1 144 51.4
SHI05894 Sapria himalayana HOM05D005457 ORTHO05D006350 9.4e-36 156.4 178 47.2
MD11G1084500 Malus domestica HOM05D005457 ORTHO05D006350 1.2e-35 156.0 188 46.3
TAR623G1178 Trochodendron aralioides HOM05D005457 ORTHO05D006350 1.6e-35 155.6 274 40.1
SalBow2G3533 Salvia bowleyana HOM05D005457 ORTHO05D006350 2.1e-35 155.2 185 44.9
Nitab4.5_0006476g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 2.7e-35 154.8 150 50.0
Zm00001eb159160 Zea mays HOM05D005457 ORTHO05D006350 4.6e-35 154.1 175 46.9
Cc00_g21960 Coffea canephora HOM05D005457 ORTHO05D006350 6.1e-35 153.7 176 46.0
Peaxi162Scf00433g00116 Petunia axillaris HOM05D005457 ORTHO05D006350 6.1e-35 153.7 153 48.4
Zm00001eb358910 Zea mays HOM05D005457 ORTHO05D006350 7.9e-35 153.3 175 45.7
EL10Ac7g16099 Beta vulgaris HOM05D005457 ORTHO05D006350 1.0e-34 152.9 182 47.3
Lsat_1_v5_gn_9_25441 Lactuca sativa HOM05D005457 ORTHO05D006350 1.0e-34 152.9 187 42.8
COL.COLO4_19073 Corchorus olitorius HOM05D005457 ORTHO05D006350 1.4e-34 152.5 307 35.5
HanXRQChr08g0237081 Helianthus annuus HOM05D005457 ORTHO05D006350 1.4e-34 152.5 185 44.3
ECA247G2917 Erigeron canadensis HOM05D005457 ORTHO05D006350 2.3e-34 151.8 165 46.1
DCAR_027735 Daucus carota HOM05D005457 ORTHO05D006350 3.0e-34 151.4 174 47.7
MBI14_g32924_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 3.0e-34 151.4 141 51.1
CAN.G1002.16 Capsicum annuum HOM05D005457 ORTHO05D006350 3.9e-34 151.0 171 45.6
ATR0618G328 Amborella trichopoda HOM05D005457 ORTHO05D006350 1.1e-33 149.4 142 49.3
Sopen09g014590 Solanum pennellii HOM05D005457 ORTHO05D006350 1.1e-33 149.4 144 49.3
Solyc09g031650.3 Solanum lycopersicum HOM05D005457 ORTHO05D006350 2.0e-33 148.7 144 49.3
DCAR_027739 Daucus carota HOM05D005457 ORTHO05D006350 2.5e-33 148.3 294 37.1
DCAR_027737 Daucus carota HOM05D005457 ORTHO05D006350 4.3e-33 147.5 278 38.8
SGA_v2.0_scaffold199G41161 Striga asiatica HOM05D005457 ORTHO05D006350 6.3e-32 143.7 186 41.4
Migut.N00905 Erythranthe guttata HOM05D005457 ORTHO05D006350 6.5e-29 133.7 143 44.1
Oeu002456.1 Olea europaea HOM05D005457 ORTHO05D006350 2.6e-25 121.7 87 63.2
CDE09G0137 Ceratophyllum demersum HOM05D000076 ORTHO05D001377 7.4e-25 120.2 90 57.8
C03p14030 Brassica napus HOM05D012589 ORTHO05D006350 4.8e-24 117.5 337 32.6
CSS0043795 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 2.1e-19 102.1 126 47.6
CSS0046602 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 2.1e-19 102.1 126 47.6
Rhsim13G0075000 Rhododendron simsii HOM05D005457 ORTHO05D006350 4.4e-17 94.4 337 34.1
Actinidia25125 Actinidia chinensis HOM05D005457 ORTHO05D006350 2.2e-16 92.0 96 46.9
BcaC04g20237 Brassica carinata HOM05D012589 ORTHO05D006350 2.0e-14 85.5 131 52.7
Psat5g196760 Pisum sativum HOM05D005457 ORTHO05D002728 4.5e-14 84.3 121 38.8
CBR_g44392 Chara braunii HOM05D005457 ORTHO05D006350 5.9e-14 84.0 128 31.2
CBR_g34583 Chara braunii HOM05D005457 ORTHO05D006350 8.5e-13 80.1 141 30.5
SEGI_21152 Sequoiadendron giganteum HOM05D005457 ORTHO05D006350 1.1e-12 79.7 133 39.1
CBR_g29779 Chara braunii HOM05D005457 ORTHO05D006350 1.5e-12 79.3 108 33.3
CBR_g34582 Chara braunii HOM05D005457 ORTHO05D006350 1.5e-12 79.3 112 33.9
Actinidia08559 Actinidia chinensis HOM05D005457 ORTHO05D006350 2.5e-12 78.6 75 50.7
CBR_g34581 Chara braunii HOM05D005457 ORTHO05D006350 1.4e-10 72.8 111 29.7
CBR_g49555 Chara braunii HOM05D005457 ORTHO05D006350 8.8e-10 70.1 108 28.7
BolC9t57985H Brassica oleracea HOM05D012589 ORTHO05D041873 2.2e-08 65.5 63 60.3
C09p51240 Brassica napus HOM05D012589 ORTHO05D041873 8.3e-08 63.5 63 61.9


User provided reference genes

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