Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 6.3e-82 307.4 153 100.0
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 2.2e-66 255.8 153 84.3
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 6.3e-66 254.2 161 83.9
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 6.3e-66 254.2 161 83.9
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 1.1e-65 253.4 150 84.7
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 1.4e-65 253.1 158 84.2
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 1.4e-65 253.1 159 84.3
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 5.3e-65 251.1 153 84.3
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 5.3e-65 251.1 155 83.2
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 3.5e-64 248.4 155 83.2
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 3.8e-63 245.0 156 82.1
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 5.5e-62 241.1 159 81.8
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 7.2e-62 240.7 156 81.4
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 1.6e-61 239.6 154 81.8
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 1.6e-61 239.6 155 81.3
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 8.8e-60 233.8 147 80.3
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 1.3e-58 229.9 154 77.3
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 1.7e-55 219.5 155 75.5
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 1.5e-54 216.5 153 78.4
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 2.1e-53 212.6 142 76.8
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 2.1e-53 212.6 135 77.8
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 1.0e-52 210.3 171 71.9
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 8.3e-50 200.7 140 73.6
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 2.7e-48 195.7 152 64.5
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 2.9e-47 192.2 141 67.4
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 2.7e-45 185.7 151 60.9
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 6.1e-45 184.5 155 60.0
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 8.0e-45 184.1 148 60.8
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.0e-44 183.7 152 60.5
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 1.8e-44 183.0 150 59.3
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 3.0e-44 182.2 151 61.6
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 5.2e-44 181.4 155 59.4
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 5.2e-44 181.4 155 59.4
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 3.4e-43 178.7 140 62.9
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 7.5e-43 177.6 152 59.2
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 7.5e-43 177.6 152 59.9
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 9.8e-43 177.2 145 60.0
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 9.8e-43 177.2 140 62.9
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 2.2e-42 176.0 154 59.7
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 4.9e-42 174.9 150 60.7
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 8.3e-42 174.1 119 68.9
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 3.1e-41 172.2 118 71.2
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 5.4e-41 171.4 150 56.7
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 9.2e-41 170.6 156 56.4
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 1.2e-40 170.2 145 61.4
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 1.2e-40 170.2 145 61.4
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 1.2e-40 170.2 145 61.4
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 1.2e-40 170.2 119 70.6
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 1.6e-40 169.9 132 59.8
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 2.0e-40 169.5 141 63.1
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 2.0e-40 169.5 157 58.0
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 2.0e-40 169.5 166 57.2
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 2.0e-40 169.5 140 61.4
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 2.7e-40 169.1 141 62.4
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 2.7e-40 169.1 107 72.9
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 4.5e-40 168.3 145 62.8
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 5.9e-40 167.9 155 55.5
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 5.9e-40 167.9 142 60.6
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 1.0e-39 167.2 153 59.5
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 1.0e-39 167.2 145 55.9
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 1.3e-39 166.8 148 55.4
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 3.8e-39 165.2 134 62.7
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 3.8e-39 165.2 122 66.4
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 5.0e-39 164.9 145 55.9
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 8.6e-39 164.1 140 59.3
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 8.6e-39 164.1 140 60.0
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 8.6e-39 164.1 154 55.8
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 1.1e-38 163.7 147 56.5
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 1.1e-38 163.7 154 55.8
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 1.1e-38 163.7 156 57.7
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 1.5e-38 163.3 132 62.9
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 1.9e-38 162.9 90 77.8
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 2.5e-38 162.5 153 58.2
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 4.3e-38 161.8 171 50.3
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 4.3e-38 161.8 138 57.2
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 5.6e-38 161.4 81 84.0
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 7.3e-38 161.0 141 58.9
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 7.3e-38 161.0 148 57.4
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 1.2e-37 160.2 142 59.9
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 1.2e-37 160.2 144 59.0
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 1.2e-37 160.2 88 75.0
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 1.6e-37 159.8 141 61.0
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 1.6e-37 159.8 159 55.3
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 2.1e-37 159.5 81 82.7
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 2.8e-37 159.1 91 74.7
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 2.8e-37 159.1 79 87.3
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 4.7e-37 158.3 82 82.9
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 6.1e-37 157.9 79 84.8
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 6.1e-37 157.9 95 72.6
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 8.0e-37 157.5 134 60.4
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 1.4e-36 156.8 100 69.0
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 1.4e-36 156.8 80 85.0
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 1.4e-36 156.8 139 59.0
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 1.8e-36 156.4 132 59.8
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 2.3e-36 156.0 82 82.9
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 2.3e-36 156.0 82 82.9
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 2.3e-36 156.0 140 57.1
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 3.0e-36 155.6 138 59.4
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 3.0e-36 155.6 151 57.0
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 6.8e-36 154.5 131 55.7
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 6.8e-36 154.5 136 56.6
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 1.2e-35 153.7 141 59.6
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 1.2e-35 153.7 141 59.6
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 1.2e-35 153.7 149 53.0
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 1.5e-35 153.3 128 58.6
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 3.4e-35 152.1 79 83.5
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 4.4e-35 151.8 91 71.4
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 5.7e-35 151.4 97 72.2
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 2.2e-34 149.4 93 74.2
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 3.7e-34 148.7 79 78.5
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 6.4e-34 147.9 137 56.2
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 1.4e-33 146.7 150 52.0
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 1.8e-33 146.4 79 75.9
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 8.6e-31 137.5 136 54.4
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 6.2e-29 131.3 139 54.0
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 1.8e-28 129.8 102 58.8
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 2.3e-28 129.4 93 64.5
BraA10t43707Z Brassica rapa HOM05D005372 ORTHO05D006593 1.9e-25 119.8 78 75.6
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 3.2e-25 119.0 177 40.1
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 2.7e-24 115.9 106 53.8
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 3.5e-24 115.5 54 87.0
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 3.0e-23 112.5 98 59.2
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 5.0e-23 111.7 62 77.4
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 6.6e-23 111.3 89 62.9
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 6.6e-23 111.3 116 53.4
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 6.6e-23 111.3 52 88.5
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 8.6e-23 110.9 113 53.1
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 1.4e-20 103.6 82 53.7
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 6.8e-20 101.3 120 49.2
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 7.5e-19 97.8 82 61.0
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 1.3e-18 97.1 112 47.3
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 3.7e-18 95.5 116 43.1
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 4.6e-16 88.6 140 40.7
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 5.6e-14 81.6 61 63.9
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 1.2e-13 80.5 104 47.1
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 2.6e-11 72.8 85 40.0
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 2.9e-10 69.3 81 51.9
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 1.4e-09 67.0 44 61.4
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 2.4e-09 66.2 43 62.8
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 1.6e-08 63.5 132 31.1
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 3.0e-07 59.3 41 61.0
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 1.1e-06 57.4 49 53.1


User provided reference genes

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