Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36290 Brassica carinata HOM05D012466 ORTHO05D012988 3.5e-104 381.7 202 100.0
BolC9t57993H Brassica oleracea HOM05D012466 ORTHO05D012988 4.0e-92 341.7 202 90.1
C09p51340 Brassica napus HOM05D012466 ORTHO05D012988 7.7e-88 327.4 194 90.2
BraA10t43713Z Brassica rapa HOM05D012466 ORTHO05D012988 2.1e-85 319.3 202 85.1
A10p16300 Brassica napus HOM05D012466 ORTHO05D012988 1.2e-80 303.5 194 84.5
BcaB02g11244 Brassica carinata HOM05D012466 ORTHO05D012988 2.3e-47 193.0 131 82.4
BcaB05g22477 Brassica carinata HOM05D012466 ORTHO05D012988 9.9e-43 177.6 215 51.2
AT5G59230 Arabidopsis thaliana HOM05D003218 ORTHO05D012988 4.8e-37 158.7 206 52.4
Carub.0008s1972 Capsella rubella HOM05D003218 ORTHO05D012988 8.1e-37 157.9 206 51.5
AL8G35460 Arabidopsis lyrata HOM05D003218 ORTHO05D012988 2.0e-35 153.3 203 51.7
BcaB01g02433 Brassica carinata HOM05D005426 ORTHO05D012988 1.1e-33 147.5 147 55.8
CARHR285310 Cardamine hirsuta HOM05D003218 ORTHO05D012988 3.2e-33 146.0 207 45.4
C02p12820 Brassica napus HOM05D012466 ORTHO05D012988 2.5e-22 109.8 155 45.8
BcaB05g22476 Brassica carinata HOM05D012466 ORTHO05D012988 7.9e-16 88.2 143 47.6
Thhalv10015836m.g Eutrema salsugineum HOM05D012466 ORTHO05D012988 1.9e-14 83.6 65 58.5
RcHm_v2.0_Chr5g0029921 Rosa chinensis HOM05D003218 ORTHO05D003702 1.8e-12 77.0 211 33.6
Duzib150G1564 Durio zibethinus HOM05D003218 ORTHO05D003702 5.8e-11 72.0 354 27.4
PSO384G5051 Papaver somniferum HOM05D003218 ORTHO05D003702 7.6e-11 71.6 234 30.3
MSTRG.21222 Avicennia marina HOM05D003218 ORTHO05D003702 1.7e-10 70.5 72 54.2
CAN.G394.76 Capsicum annuum HOM05D003218 ORTHO05D003702 1.4e-09 67.4 72 44.4
Solyc06g076390.3 Solanum lycopersicum HOM05D003218 ORTHO05D003702 1.4e-09 67.4 72 50.0
Sopen06g032800 Solanum pennellii HOM05D003218 ORTHO05D003702 1.4e-09 67.4 72 50.0
Actinidia23918 Actinidia chinensis HOM05D003218 ORTHO05D003702 1.9e-09 67.0 72 50.0
Ciclev10028561m.g Citrus clementina HOM05D003218 ORTHO05D003702 2.5e-09 66.6 75 46.7
Dinv34286 Davidia involucrata HOM05D003218 ORTHO05D003702 2.5e-09 66.6 72 50.0
Cc01_g13340 Coffea canephora HOM05D003218 ORTHO05D003702 4.2e-09 65.9 72 48.6
Migut.D00878 Erythranthe guttata HOM05D003218 ORTHO05D003702 4.2e-09 65.9 72 50.0
Dinv17046 Davidia involucrata HOM05D003218 ORTHO05D003702 7.1e-09 65.1 72 47.2
Dinv42990 Davidia involucrata HOM05D003218 ORTHO05D003702 7.1e-09 65.1 72 47.2
Dinv43108 Davidia involucrata HOM05D003218 ORTHO05D003702 7.1e-09 65.1 72 47.2
Duzib168G2307 Durio zibethinus HOM05D003218 ORTHO05D003702 1.6e-08 63.9 93 45.2
TWI75G0827 Tripterygium wilfordii HOM05D003218 ORTHO05D003702 1.6e-08 63.9 72 41.7
CiPaw.14G065100 Carya illinoinensis HOM05D003218 ORTHO05D003702 2.1e-08 63.5 111 36.9
CSS0023241 Camellia sinensis var. sinensis HOM05D003218 ORTHO05D003702 2.7e-08 63.2 91 44.0
Ca_01303_v3 Cicer arietinum L. HOM05D003218 ORTHO05D003702 2.7e-08 63.2 76 47.4
Manes.02G128700 Manihot esculenta HOM05D003218 ORTHO05D003702 2.7e-08 63.2 82 48.8
Atru.chr3.3992 Acer truncatum HOM05D003218 ORTHO05D003702 3.5e-08 62.8 72 41.7
Ah.15g098630 Amaranthus hybridus HOM05D003218 ORTHO05D003702 3.5e-08 62.8 73 41.1
Aqoxy2G03612 Aquilegia oxysepala HOM05D003218 ORTHO05D003702 3.5e-08 62.8 130 31.5
Cpa.g.sc81.98 Carica papaya HOM05D003218 ORTHO05D003702 3.5e-08 62.8 75 46.7
Lalb_Chr24g0397181 Lupinus albus HOM05D003218 ORTHO05D003702 3.5e-08 62.8 72 44.4
PSO832G1276 Papaver somniferum HOM05D003218 ORTHO05D003702 3.5e-08 62.8 152 28.3
SpUn0001_0840 Schrenkiella parvula HOM05D012466 ORTHO05D012988 3.5e-08 62.8 96 51.0
SGA_v2.0_scaffold111G31542 Striga asiatica HOM05D003218 ORTHO05D003702 3.5e-08 62.8 72 51.4
GSVIVG01024907001 Vitis vinifera HOM05D003218 ORTHO05D003702 3.5e-08 62.8 114 37.7
TPR.G27370 Trifolium pratense HOM05D003218 ORTHO05D003702 4.6e-08 62.4 72 45.8
TAR365G0505 Trochodendron aralioides HOM05D003218 ORTHO05D003702 4.6e-08 62.4 150 30.7
Actinidia34426 Actinidia chinensis HOM05D003218 ORTHO05D003702 6.1e-08 62.0 75 48.0
CiPaw.13G089300 Carya illinoinensis HOM05D003218 ORTHO05D003702 6.1e-08 62.0 72 47.2
Gohir.A05G093100 Gossypium hirsutum HOM05D003218 ORTHO05D003702 6.1e-08 62.0 92 44.6
Phvul.L008243 Phaseolus vulgaris HOM05D003218 ORTHO05D003702 6.1e-08 62.0 51 49.0
Glyma.11G136100 Glycine max HOM05D003218 ORTHO05D003702 7.9e-08 61.6 72 48.6
Glyma.15G035300 Glycine max HOM05D003218 ORTHO05D003702 7.9e-08 61.6 111 35.1
Gohir.A07G100400 Gossypium hirsutum HOM05D003218 ORTHO05D003702 7.9e-08 61.6 93 45.2
Lalb_Chr03g0026451 Lupinus albus HOM05D003218 ORTHO05D003702 7.9e-08 61.6 51 49.0
Lalb_Chr19g0137971 Lupinus albus HOM05D003218 ORTHO05D003702 7.9e-08 61.6 51 49.0
PSO063G1745 Papaver somniferum HOM05D003218 ORTHO05D003702 7.9e-08 61.6 51 47.1
PSO339G5513 Papaver somniferum HOM05D003218 ORTHO05D003702 7.9e-08 61.6 51 47.1
Phvul.005G159000 Phaseolus vulgaris HOM05D003218 ORTHO05D003702 7.9e-08 61.6 51 49.0
Psat5g118600 Pisum sativum HOM05D003218 ORTHO05D003702 7.9e-08 61.6 51 49.0
Thecc.09G315600 Theobroma cacao HOM05D003218 ORTHO05D003702 7.9e-08 61.6 102 38.2
VMungo1080G0815 Vigna mungo HOM05D003218 ORTHO05D003702 7.9e-08 61.6 51 49.0
VMungo1080G1854 Vigna mungo HOM05D003218 ORTHO05D003702 7.9e-08 61.6 51 49.0
Aa31LG1G6850 Aethionema arabicum HOM05D003218 ORTHO05D003702 1.0e-07 61.2 52 46.2
A10p06010 Brassica napus HOM05D003218 ORTHO05D003702 1.0e-07 61.2 332 22.9
FAN21G2440 Fragaria x ananassa HOM05D003218 ORTHO05D003702 1.0e-07 61.2 211 27.0
MELO3C025890.2 Cucumis melo HOM05D003218 ORTHO05D003702 1.3e-07 60.8 139 31.7
Lj3g0009557 Lotus japonicus HOM05D003218 ORTHO05D003702 1.3e-07 60.8 51 47.1
Manes.01G169400 Manihot esculenta HOM05D003218 ORTHO05D003702 1.3e-07 60.8 104 35.6
PSO210G7823 Papaver somniferum HOM05D003218 ORTHO05D003702 1.3e-07 60.8 152 30.3
PGSC0003DMG400030421 Solanum tuberosum HOM05D003218 ORTHO05D003702 1.3e-07 60.8 101 36.6
EL10Ac7g16069 Beta vulgaris HOM05D003218 ORTHO05D003702 1.8e-07 60.5 71 40.8
CSS0024890 Camellia sinensis var. sinensis HOM05D003218 ORTHO05D003702 1.8e-07 60.5 73 50.7
Carub.0001s0680 Capsella rubella HOM05D003218 ORTHO05D003702 1.8e-07 60.5 52 46.2
AUR62001737 Chenopodium quinoa HOM05D003218 ORTHO05D003702 1.8e-07 60.5 71 40.8
Gorai.009G096500 Gossypium raimondii HOM05D003218 ORTHO05D003702 1.8e-07 60.5 149 32.2
Lalb_Chr01g0003481 Lupinus albus HOM05D003218 ORTHO05D003702 1.8e-07 60.5 51 47.1
Medtr2g097740 Medicago truncatula HOM05D003218 ORTHO05D003702 1.8e-07 60.5 72 54.2
AL1G17620 Arabidopsis lyrata HOM05D003218 ORTHO05D003702 2.3e-07 60.1 51 47.1
AL1G17650 Arabidopsis lyrata HOM05D003218 ORTHO05D003702 2.3e-07 60.1 51 47.1
AT1G07470 Arabidopsis thaliana HOM05D003218 ORTHO05D003702 2.3e-07 60.1 51 47.1
AT1G07480 Arabidopsis thaliana HOM05D003218 ORTHO05D003702 2.3e-07 60.1 51 47.1
BcaB03g13393 Brassica carinata HOM05D003218 ORTHO05D003702 2.3e-07 60.1 51 47.1
A08p35650 Brassica napus HOM05D003218 ORTHO05D003702 2.3e-07 60.1 51 47.1
C08p03080 Brassica napus HOM05D003218 ORTHO05D003702 2.3e-07 60.1 51 47.1
BolC8t47106H Brassica oleracea HOM05D003218 ORTHO05D003702 2.3e-07 60.1 51 47.1
Carub.0001s0677 Capsella rubella HOM05D003218 ORTHO05D003702 2.3e-07 60.1 51 47.1
Thhalv10007946m.g Eutrema salsugineum HOM05D003218 ORTHO05D003702 2.3e-07 60.1 51 47.1
Glyma.12G059800 Glycine max HOM05D003218 ORTHO05D003702 2.3e-07 60.1 51 47.1
Glyma.13G339000 Glycine max HOM05D003218 ORTHO05D003702 2.3e-07 60.1 51 47.1
Lj3g0024298 Lotus japonicus HOM05D003218 ORTHO05D003702 2.3e-07 60.1 109 35.8
Oeu007659.1 Olea europaea HOM05D003218 ORTHO05D003702 2.3e-07 60.1 71 46.5
Potri.009G036700 Populus trichocarpa HOM05D003218 ORTHO05D003702 2.3e-07 60.1 78 47.4
THA.LOC104800687 Tarenaya hassleriana HOM05D003218 ORTHO05D003702 2.3e-07 60.1 51 47.1
BcaC05g24695 Brassica carinata HOM05D003218 ORTHO05D003702 3.0e-07 59.7 51 47.1
BcaC07g41996 Brassica carinata HOM05D003218 ORTHO05D003702 3.0e-07 59.7 51 47.1
A09p66400 Brassica napus HOM05D003218 ORTHO05D003702 3.0e-07 59.7 51 47.1
BolC8t52583H Brassica oleracea HOM05D003218 ORTHO05D003702 3.0e-07 59.7 51 47.1
BraA09t41976Z Brassica rapa HOM05D003218 ORTHO05D003702 3.0e-07 59.7 51 47.1
Lj1A146G69 Lonicera japonica HOM05D003218 ORTHO05D003702 3.0e-07 59.7 111 34.2
MD11G1094800 Malus domestica HOM05D003218 ORTHO05D003702 3.0e-07 59.7 51 49.0
Nitab4.5_0000463g0110 Nicotiana tabacum HOM05D003218 ORTHO05D003702 3.0e-07 59.7 65 52.3
Pp3c8_13300 Physcomitrium patens HOM05D003218 ORTHO05D003702 3.0e-07 59.7 70 45.7
Sp6g20760 Schrenkiella parvula HOM05D012466 ORTHO05D012988 3.0e-07 59.7 47 63.8
Sed0005039 Sechium edule HOM05D003218 ORTHO05D003702 3.0e-07 59.7 139 31.7
THA.LOC104815781 Tarenaya hassleriana HOM05D003218 ORTHO05D003702 3.0e-07 59.7 51 47.1
Aa31LG1G6820 Aethionema arabicum HOM05D003218 ORTHO05D003702 3.9e-07 59.3 70 48.6
CDE08G0741 Ceratophyllum demersum HOM05D003218 ORTHO05D003702 3.9e-07 59.3 80 42.5
ECA247G2536 Erigeron canadensis HOM05D003218 ORTHO05D003702 3.9e-07 59.3 73 45.2
Eucgr.J02029 Eucalyptus grandis HOM05D003218 ORTHO05D003702 3.9e-07 59.3 45 53.3
Oeu053891.1 Olea europaea HOM05D003218 ORTHO05D003702 3.9e-07 59.3 50 50.0
TAR369G0400 Trochodendron aralioides HOM05D003218 ORTHO05D003702 3.9e-07 59.3 51 45.1
ClCG02G019890 Citrullus lanatus HOM05D003218 ORTHO05D003702 5.1e-07 58.9 139 31.7
COL.COLO4_18577 Corchorus olitorius HOM05D003218 ORTHO05D003702 5.1e-07 58.9 51 47.1
Mapoly0112s0032 Marchantia polymorpha HOM05D003218 ORTHO05D003702 5.1e-07 58.9 71 38.0
THA.LOC104810753 Tarenaya hassleriana HOM05D003218 ORTHO05D003702 5.1e-07 58.9 51 47.1
Aa31LG5G7000 Aethionema arabicum HOM05D003218 ORTHO05D003702 6.7e-07 58.5 238 28.6
BcaB02g06738 Brassica carinata HOM05D003218 ORTHO05D003702 6.7e-07 58.5 51 47.1
BcaC05g24697 Brassica carinata HOM05D003218 ORTHO05D003702 6.7e-07 58.5 51 47.1
ECA248G3960 Erigeron canadensis HOM05D003218 ORTHO05D003702 6.7e-07 58.5 73 46.6
Thhalv10007947m.g Eutrema salsugineum HOM05D003218 ORTHO05D003702 6.7e-07 58.5 51 45.1
HanXRQChr01g0010401 Helianthus annuus HOM05D003218 ORTHO05D003702 6.7e-07 58.5 73 46.6
Hma1.2p1_0615F.1_g189680 Hydrangea macrophylla HOM05D003218 ORTHO05D003702 6.7e-07 58.5 64 48.4
Lsat_1_v5_gn_9_24801 Lactuca sativa HOM05D003218 ORTHO05D003702 6.7e-07 58.5 141 30.5
MD03G1086200 Malus domestica HOM05D003218 ORTHO05D003702 6.7e-07 58.5 51 47.1
Pp3c24_9280 Physcomitrium patens HOM05D003218 ORTHO05D003702 6.7e-07 58.5 113 33.6
Prupe.6G070500 Prunus persica HOM05D003218 ORTHO05D003702 6.7e-07 58.5 45 51.1
QL01p029248 Quercus lobata HOM05D003218 ORTHO05D003702 6.7e-07 58.5 50 44.0
Rhsim01G0231600 Rhododendron simsii HOM05D003218 ORTHO05D003702 6.7e-07 58.5 45 51.1
Rhsim13G0077100 Rhododendron simsii HOM05D003218 ORTHO05D003702 6.7e-07 58.5 73 49.3
SEGI_10054 Sequoiadendron giganteum HOM05D003218 ORTHO05D003702 6.7e-07 58.5 85 38.8
Zm00001eb346300 Zea mays HOM05D003218 ORTHO05D003702 6.7e-07 58.5 51 43.1
Aa31LG5G7120 Aethionema arabicum HOM05D003218 ORTHO05D003702 8.7e-07 58.2 109 31.2
CsaV3_7G010010 Cucumis sativus L. HOM05D003218 ORTHO05D003702 8.7e-07 58.2 45 51.1
Nn2g13454 Nelumbo nucifera HOM05D003218 ORTHO05D003702 8.7e-07 58.2 51 47.1
Os05g0292200 Oryza sativa ssp. japonica HOM05D003218 ORTHO05D003702 8.7e-07 58.2 51 43.1
Peaxi162Scf00481g00323 Petunia axillaris HOM05D003218 ORTHO05D003702 8.7e-07 58.2 104 39.4
PGR102G0701 Punica granatum HOM05D003218 ORTHO05D003702 8.7e-07 58.2 45 51.1
Hund04922 Selenicereus undatus HOM05D003218 ORTHO05D003702 8.7e-07 58.2 45 51.1
SGA_v2.0_scaffold54G19476 Striga asiatica HOM05D003218 ORTHO05D003702 8.7e-07 58.2 72 48.6
THA.LOC104799429 Tarenaya hassleriana HOM05D003218 ORTHO05D003702 8.7e-07 58.2 74 52.7
Zm00001eb284630 Zea mays HOM05D003218 ORTHO05D003702 8.7e-07 58.2 51 43.1
Aqoxy1G00871 Aquilegia oxysepala HOM05D003218 ORTHO05D003702 1.1e-06 57.8 51 45.1
BraA02t05815Z Brassica rapa HOM05D012466 ORTHO05D012988 1.1e-06 57.8 96 45.8
CARHR007220 Cardamine hirsuta HOM05D003218 ORTHO05D003702 1.1e-06 57.8 284 23.9
FvH4_3g36940 Fragaria vesca HOM05D003218 ORTHO05D003702 1.1e-06 57.8 45 48.9
FAN11G1275 Fragaria x ananassa HOM05D003218 ORTHO05D003702 1.1e-06 57.8 45 48.9
FAN16G2405 Fragaria x ananassa HOM05D003218 ORTHO05D003702 1.1e-06 57.8 45 48.9
FAN21G3821 Fragaria x ananassa HOM05D003218 ORTHO05D003702 1.1e-06 57.8 45 48.9
FAN25G2385 Fragaria x ananassa HOM05D003218 ORTHO05D003702 1.1e-06 57.8 45 48.9
Gohir.D07G104600 Gossypium hirsutum HOM05D003218 ORTHO05D003702 1.1e-06 57.8 101 34.7
Gorai.001G112500 Gossypium raimondii HOM05D003218 ORTHO05D003702 1.1e-06 57.8 101 34.7
PSO478G3557 Papaver somniferum HOM05D003218 ORTHO05D003702 1.1e-06 57.8 215 28.4
Potri.001G244204 Populus trichocarpa HOM05D003218 ORTHO05D003702 1.1e-06 57.8 45 53.3
RcHm_v2.0_Chr5g0066351 Rosa chinensis HOM05D003218 ORTHO05D003702 1.1e-06 57.8 45 48.9
CANSAT54G1307 Cannabis sativa HOM05D003218 ORTHO05D003702 1.5e-06 57.4 45 48.9
Haze_24169 Corylus avellana HOM05D003218 ORTHO05D003702 1.5e-06 57.4 128 31.2
Haze_24174 Corylus avellana HOM05D003218 ORTHO05D003702 1.5e-06 57.4 128 31.2
Sed0005276 Sechium edule HOM05D003218 ORTHO05D003702 1.5e-06 57.4 139 30.2
TPR.G6857 Trifolium pratense HOM05D003218 ORTHO05D003702 1.5e-06 57.4 109 34.9
HPP92_015484 Vanilla planifolia HOM05D003218 ORTHO05D003702 1.5e-06 57.4 83 47.0
Actinidia33769 Actinidia chinensis HOM05D003218 ORTHO05D003702 1.9e-06 57.0 51 45.1
ATR0559G311 Amborella trichopoda HOM05D003218 ORTHO05D003702 1.9e-06 57.0 52 42.3
CDE05G1682 Ceratophyllum demersum HOM05D003218 ORTHO05D003702 1.9e-06 57.0 132 31.1
CsaV3_6G016600 Cucumis sativus L. HOM05D003218 ORTHO05D003702 1.9e-06 57.0 102 34.3
HanXRQChr01g0010631 Helianthus annuus HOM05D003218 ORTHO05D003702 1.9e-06 57.0 147 33.3
Nitab4.5_0006916g0020 Nicotiana tabacum HOM05D003218 ORTHO05D003702 1.9e-06 57.0 102 34.3
RcHm_v2.0_Chr5g0030001 Rosa chinensis HOM05D003218 ORTHO05D003702 2.5e-06 56.6 45 48.9
MBI14_g11605_MAGBIO Magnolia biondii HOM05D003218 ORTHO05D003702 3.3e-06 56.2 112 32.1
BcaB05g23732 Brassica carinata HOM05D003065 ORTHO05D003802 4.3e-06 55.8 28 92.9
Hund18888 Selenicereus undatus HOM05D003218 ORTHO05D003702 4.3e-06 55.8 84 42.9
Pp3c4_18060 Physcomitrium patens HOM05D003218 ORTHO05D003702 5.7e-06 55.5 45 48.9
C05p05490 Brassica napus HOM05D003218 ORTHO05D003702 9.7e-06 54.7 45 46.7


User provided reference genes

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