Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36289 Brassica carinata HOM05D000426 ORTHO05D090924 7.8e-58 227.3 145 100.0
A10p16310 Brassica napus HOM05D000426 ORTHO05D000328 4.0e-38 161.8 134 85.8
BraA10t43714Z Brassica rapa HOM05D000426 ORTHO05D000328 4.0e-38 161.8 134 85.8
BolC9t57994H Brassica oleracea HOM05D000426 ORTHO05D000328 1.2e-37 160.2 134 86.6
C09p51360 Brassica napus HOM05D000426 ORTHO05D000328 4.5e-37 158.3 135 86.7
Thhalv10013567m.g Eutrema salsugineum HOM05D000426 ORTHO05D000328 2.2e-36 156.0 137 83.2
AL8G35470 Arabidopsis lyrata HOM05D000426 ORTHO05D000328 4.2e-35 151.8 135 82.2
Sp6g20770 Schrenkiella parvula HOM05D000426 ORTHO05D000328 1.2e-34 150.2 142 76.8
AT5G59220 Arabidopsis thaliana HOM05D000426 ORTHO05D000328 8.7e-33 144.1 144 74.3
Carub.0008s1973 Capsella rubella HOM05D000426 ORTHO05D000328 4.0e-30 135.2 134 76.1
CARHR285320 Cardamine hirsuta HOM05D000426 ORTHO05D000328 5.3e-30 134.8 126 75.4
Aa31LG1G11970 Aethionema arabicum HOM05D000426 ORTHO05D000328 7.4e-24 114.4 144 53.5
THA.LOC104799426 Tarenaya hassleriana HOM05D000426 ORTHO05D000328 1.8e-14 83.2 68 58.8
Aa31LG4G15720 Aethionema arabicum HOM05D005278 ORTHO05D006500 2.7e-10 69.3 93 47.3
THA.LOC104814885 Tarenaya hassleriana HOM05D000426 ORTHO05D000328 7.9e-10 67.8 111 41.4
Ciclev10028495m.g Citrus clementina HOM05D000426 ORTHO05D000328 1.0e-09 67.4 118 38.1
Dinv17052 Davidia involucrata HOM05D000426 ORTHO05D000328 1.4e-09 67.0 122 35.2
Dinv42996 Davidia involucrata HOM05D000426 ORTHO05D000328 1.4e-09 67.0 122 35.2
Dinv43101 Davidia involucrata HOM05D000426 ORTHO05D000328 1.4e-09 67.0 122 35.2
Lj2A1028T36 Lonicera japonica HOM05D000426 ORTHO05D000328 1.8e-09 66.6 95 41.1
AUR62020044 Chenopodium quinoa HOM05D000426 ORTHO05D000328 3.0e-09 65.9 92 39.1
QL01p028002 Quercus lobata HOM05D000426 ORTHO05D000328 3.0e-09 65.9 114 35.1
COL.COLO4_18583 Corchorus olitorius HOM05D000426 ORTHO05D000328 6.7e-09 64.7 77 41.6
FAN16G1766 Fragaria x ananassa HOM05D000426 ORTHO05D000328 1.5e-08 63.5 116 39.7
FAN21G3872 Fragaria x ananassa HOM05D000426 ORTHO05D000328 2.0e-08 63.2 116 38.8
Thecc.09G314100 Theobroma cacao HOM05D000426 ORTHO05D000328 2.5e-08 62.8 64 45.3
FvH4_3g37010 Fragaria vesca HOM05D000426 ORTHO05D000328 3.3e-08 62.4 116 38.8
Sabra16G0148600 Salix brachista HOM05D000426 ORTHO05D000328 4.3e-08 62.0 43 60.5
Lj1A146T73 Lonicera japonica HOM05D000426 ORTHO05D000328 5.7e-08 61.6 96 36.5
Lj2A1069T58 Lonicera japonica HOM05D000426 ORTHO05D000328 5.7e-08 61.6 103 40.8
Prupe.6G068800 Prunus persica HOM05D000426 ORTHO05D000328 5.7e-08 61.6 109 37.6
Sc21g0006050 Simmondsia chinensis HOM05D000426 ORTHO05D000328 5.7e-08 61.6 107 39.3
CSS0017116 Camellia sinensis var. sinensis HOM05D000426 ORTHO05D000328 7.4e-08 61.2 118 33.9
Duzib170G0852 Durio zibethinus HOM05D000426 ORTHO05D000328 7.4e-08 61.2 77 40.3
Hma1.2p1_0615F.1_g189640 Hydrangea macrophylla HOM05D000426 ORTHO05D000328 7.4e-08 61.2 72 43.1
Potri.009G037300 Populus trichocarpa HOM05D000426 ORTHO05D000328 7.4e-08 61.2 58 48.3
Potri.001G245200 Populus trichocarpa HOM05D000426 ORTHO05D000328 9.7e-08 60.8 74 43.2
Eucgr.J02003 Eucalyptus grandis HOM05D000426 ORTHO05D000328 1.3e-07 60.5 63 50.8
Gohir.A05G092800 Gossypium hirsutum HOM05D000426 ORTHO05D000328 1.3e-07 60.5 71 40.8
Manes.02G128000 Manihot esculenta HOM05D000426 ORTHO05D000328 1.3e-07 60.5 132 35.6
TWI31G0164 Tripterygium wilfordii HOM05D000426 ORTHO05D000328 1.3e-07 60.5 109 39.4
FAN25G1332 Fragaria x ananassa HOM05D000426 ORTHO05D000328 1.7e-07 60.1 111 36.0
Lalb_Chr10g0104731 Lupinus albus HOM05D000426 ORTHO05D000328 2.8e-07 59.3 42 64.3
Cpa.g.sc81.90 Carica papaya HOM05D000426 ORTHO05D000328 3.7e-07 58.9 109 36.7
Rhsim01G0232400 Rhododendron simsii HOM05D000426 ORTHO05D000328 4.8e-07 58.5 48 54.2
Sopen05g031500 Solanum pennellii HOM05D000426 ORTHO05D000328 4.8e-07 58.5 60 50.0
CSS0031264 Camellia sinensis var. sinensis HOM05D000426 ORTHO05D000328 6.3e-07 58.2 87 39.1
Lsat_1_v5_gn_9_24061 Lactuca sativa HOM05D000426 ORTHO05D000328 6.3e-07 58.2 43 55.8
Actinidia34429 Actinidia chinensis HOM05D000426 ORTHO05D000328 8.2e-07 57.8 71 40.8
CANSAT54G1487 Cannabis sativa HOM05D000426 ORTHO05D000328 8.2e-07 57.8 107 39.3
CDE09G1006 Ceratophyllum demersum HOM05D000426 ORTHO05D000328 8.2e-07 57.8 117 35.0
ClCG03G001230 Citrullus lanatus HOM05D000426 ORTHO05D000328 8.2e-07 57.8 88 40.9
Gohir.D05G093600 Gossypium hirsutum HOM05D000426 ORTHO05D000328 8.2e-07 57.8 77 36.4
Gorai.009G096200 Gossypium raimondii HOM05D000426 ORTHO05D000328 8.2e-07 57.8 77 36.4
Sabra09G0026300 Salix brachista HOM05D000426 ORTHO05D000328 1.1e-06 57.4 46 52.2
A09p66430 Brassica napus HOM05D000426 ORTHO05D000328 1.4e-06 57.0 77 40.3
BraA09t41980Z Brassica rapa HOM05D000426 ORTHO05D000328 1.4e-06 57.0 77 40.3
CAN.G1184.9 Capsicum annuum HOM05D000426 ORTHO05D000328 1.4e-06 57.0 126 33.3
Haze_24185 Corylus avellana HOM05D000426 ORTHO05D000328 1.4e-06 57.0 54 50.0
CiPaw.14G064800 Carya illinoinensis HOM05D000426 ORTHO05D000328 1.8e-06 56.6 71 46.5
PGSC0003DMG400027196 Solanum tuberosum HOM05D000426 ORTHO05D000328 1.8e-06 56.6 60 50.0
Aqoxy3G02953 Aquilegia oxysepala HOM05D000426 ORTHO05D000328 2.4e-06 56.2 95 40.0
Manes.01G168600 Manihot esculenta HOM05D000426 ORTHO05D000328 2.4e-06 56.2 60 48.3
GSVIVG01024875001 Vitis vinifera HOM05D000426 ORTHO05D000328 2.4e-06 56.2 109 37.6
CAN.G394.77 Capsicum annuum HOM05D000426 ORTHO05D000328 3.1e-06 55.8 47 55.3
Duzib168G1442 Durio zibethinus HOM05D000426 ORTHO05D000328 3.1e-06 55.8 48 52.1
Lsat_1_v5_gn_8_72700 Lactuca sativa HOM05D000426 ORTHO05D000328 3.1e-06 55.8 96 39.6
Psat0s1696g0200 Pisum sativum HOM05D000426 ORTHO05D000328 3.1e-06 55.8 64 48.4
SalBow6G3236 Salvia bowleyana HOM05D000426 ORTHO05D000328 3.1e-06 55.8 112 33.0
SalBow6G6252 Salvia bowleyana HOM05D000426 ORTHO05D000328 3.1e-06 55.8 112 33.0
Zm00001eb148130 Zea mays HOM05D000426 ORTHO05D000328 3.1e-06 55.8 82 37.8
BcaC07g42467 Brassica carinata HOM05D000426 ORTHO05D000328 4.1e-06 55.5 41 63.4
Carub.0004s1044 Capsella rubella HOM05D000426 ORTHO05D000328 4.1e-06 55.5 69 37.7
Gohir.A03G045200 Gossypium hirsutum HOM05D000426 ORTHO05D000328 4.1e-06 55.5 54 48.1
HanXRQChr05g0135271 Helianthus annuus HOM05D000426 ORTHO05D000328 4.1e-06 55.5 36 63.9
BcaC07g41999 Brassica carinata HOM05D000426 ORTHO05D000328 6.9e-06 54.7 83 39.8
C08p50590 Brassica napus HOM05D000426 ORTHO05D000328 6.9e-06 54.7 83 39.8
BolC8t52586H Brassica oleracea HOM05D000426 ORTHO05D000328 6.9e-06 54.7 83 39.8
HanXRQChr06g0179071 Helianthus annuus HOM05D000426 ORTHO05D000328 6.9e-06 54.7 53 47.2
MD11G1093100 Malus domestica HOM05D000426 ORTHO05D000328 6.9e-06 54.7 38 65.8
Hund04916 Selenicereus undatus HOM05D000426 ORTHO05D000328 6.9e-06 54.7 40 57.5
Aa31LG1G6730 Aethionema arabicum HOM05D000426 ORTHO05D000328 9.1e-06 54.3 44 56.8
A05p16060 Brassica napus HOM05D000426 ORTHO05D000328 9.1e-06 54.3 32 68.8
C04p21650 Brassica napus HOM05D000426 ORTHO05D000328 9.1e-06 54.3 32 68.8
BolC4t23687H Brassica oleracea HOM05D000426 ORTHO05D000328 9.1e-06 54.3 32 68.8
BraA05t20516Z Brassica rapa HOM05D000426 ORTHO05D000328 9.1e-06 54.3 32 68.8
Nitab4.5_0005632g0010 Nicotiana tabacum HOM05D000426 ORTHO05D000328 9.1e-06 54.3 78 38.5
PGR102G0733 Punica granatum HOM05D000426 ORTHO05D000328 9.1e-06 54.3 61 41.0
Solyc06g076400.3 Solanum lycopersicum HOM05D000426 ORTHO05D000328 9.1e-06 54.3 27 81.5
Sopen06g032810 Solanum pennellii HOM05D000426 ORTHO05D000328 9.1e-06 54.3 27 81.5
PGSC0003DMG400030332 Solanum tuberosum HOM05D000426 ORTHO05D000328 9.1e-06 54.3 27 81.5
TAR369G1026 Trochodendron aralioides HOM05D000426 ORTHO05D000328 9.1e-06 54.3 85 40.0


User provided reference genes

Program Settings