Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36223 Brassica carinata HOM05D002619 ORTHO05D002804 4.1e-109 398.3 235 100.0
C09p52230 Brassica napus HOM05D002619 ORTHO05D002804 4.5e-87 325.1 243 74.9
BraA10t43782Z Brassica rapa HOM05D002619 ORTHO05D002804 5.8e-87 324.7 243 81.1
BcaC04g19626 Brassica carinata HOM05D002619 ORTHO05D002804 9.9e-87 323.9 243 75.7
A10p16980 Brassica napus HOM05D002619 ORTHO05D002804 7.4e-82 307.8 243 81.9
Sp6g21430 Schrenkiella parvula HOM05D002619 ORTHO05D002804 4.8e-81 305.1 245 72.2
C02p12190 Brassica napus HOM05D002619 ORTHO05D002804 4.2e-77 292.0 242 75.6
Thhalv10014545m.g Eutrema salsugineum HOM05D002619 ORTHO05D002804 1.8e-72 276.6 247 72.9
CARHR273340 Cardamine hirsuta HOM05D002619 ORTHO05D002804 3.8e-70 268.9 243 73.7
AT5G59760 Arabidopsis thaliana HOM05D002619 ORTHO05D002804 2.5e-66 256.1 244 71.3
AL8G36280 Arabidopsis lyrata HOM05D002619 ORTHO05D002804 3.1e-64 249.2 242 70.7
BcaB05g22574 Brassica carinata HOM05D002619 ORTHO05D002804 7.7e-63 244.6 243 68.3
BolC2t07321H Brassica oleracea HOM05D002619 ORTHO05D002804 5.5e-61 238.4 242 69.4
Carub.0008s2042 Capsella rubella HOM05D002619 ORTHO05D002804 2.2e-57 226.5 226 71.2
BraA02t05769Z Brassica rapa HOM05D002619 ORTHO05D002804 2.8e-57 226.1 245 68.6
A02p06890 Brassica napus HOM05D002619 ORTHO05D002804 5.3e-56 221.9 245 67.8
Aa31sc23G210 Aethionema arabicum HOM05D002619 ORTHO05D002804 5.9e-47 191.8 238 61.3
THA.LOC104814869 Tarenaya hassleriana HOM05D002619 ORTHO05D002804 1.4e-35 154.1 237 45.6
BcaB02g10192 Brassica carinata HOM05D002619 ORTHO05D002804 3.8e-22 109.4 209 46.4
Thhalv10017181m.g Eutrema salsugineum HOM05D002619 ORTHO05D002804 5.0e-22 109.0 209 45.0
AT2G28690 Arabidopsis thaliana HOM05D002619 ORTHO05D002804 6.6e-22 108.6 201 45.3
Carub.0004s0969 Capsella rubella HOM05D002619 ORTHO05D002804 8.6e-22 108.2 231 41.6
CARHR121800 Cardamine hirsuta HOM05D002619 ORTHO05D002804 3.3e-21 106.3 241 40.7
C04p22400 Brassica napus HOM05D002619 ORTHO05D002804 9.5e-21 104.8 209 45.5
Cc01_g12250 Coffea canephora HOM05D002619 ORTHO05D002804 1.2e-20 104.4 197 40.6
BolC4t23756H Brassica oleracea HOM05D002619 ORTHO05D002804 1.6e-20 104.0 209 45.0
BraA07t29626Z Brassica rapa HOM05D002619 ORTHO05D002804 6.1e-20 102.1 209 45.0
A07p19190 Brassica napus HOM05D002619 ORTHO05D002804 8.0e-20 101.7 209 45.0
AL4G23230 Arabidopsis lyrata HOM05D002619 ORTHO05D002804 3.0e-19 99.8 189 46.0
Dinv26273 Davidia involucrata HOM05D002619 ORTHO05D002804 5.2e-19 99.0 247 40.9
Sp4g11560 Schrenkiella parvula HOM05D002619 ORTHO05D002804 8.9e-19 98.2 198 44.4
Gohir.D03G130000 Gossypium hirsutum HOM05D002619 ORTHO05D002804 3.4e-18 96.3 278 33.8
GSVIVG01025039001 Vitis vinifera HOM05D002619 ORTHO05D002804 2.9e-17 93.2 203 42.9
Actinidia03780 Actinidia chinensis HOM05D002619 ORTHO05D002804 4.9e-17 92.4 254 37.8
BcaC02g10992 Brassica carinata HOM05D002619 ORTHO05D002804 6.4e-17 92.0 197 45.2
Cpa.g.sc252.23 Carica papaya HOM05D002619 ORTHO05D002804 6.4e-17 92.0 318 35.8
Gohir.A13G229100 Gossypium hirsutum HOM05D002619 ORTHO05D002804 6.4e-17 92.0 238 36.6
Gohir.D13G234700 Gossypium hirsutum HOM05D002619 ORTHO05D002804 8.3e-17 91.7 240 40.8
Gorai.003G136700 Gossypium raimondii HOM05D002619 ORTHO05D002804 8.3e-17 91.7 278 33.5
Gorai.013G265500 Gossypium raimondii HOM05D002619 ORTHO05D002804 2.4e-16 90.1 240 40.4
COL.COLO4_18442 Corchorus olitorius HOM05D002619 ORTHO05D002804 3.2e-16 89.7 253 37.5
BcaB01g03117 Brassica carinata HOM05D002619 ORTHO05D002804 4.1e-16 89.4 199 42.7
BcaNung06778 Brassica carinata HOM05D002619 ORTHO05D002804 4.1e-16 89.4 199 42.7
ClCG03G001850 Citrullus lanatus HOM05D002619 ORTHO05D002804 9.2e-16 88.2 228 38.6
THA.LOC104815768 Tarenaya hassleriana HOM05D002619 ORTHO05D002804 9.2e-16 88.2 270 35.9
Sed0021945 Sechium edule HOM05D002619 ORTHO05D002804 2.0e-15 87.0 241 37.8
PGR102G0064 Punica granatum HOM05D002619 ORTHO05D002804 2.7e-15 86.7 234 33.8
Peaxi162Scf00406g00012 Petunia axillaris HOM05D002619 ORTHO05D002804 4.6e-15 85.9 215 36.3
THA.LOC104800642 Tarenaya hassleriana HOM05D002619 ORTHO05D002804 1.0e-14 84.7 225 39.1
Cfa011444 Carpinus fangiana HOM05D002619 ORTHO05D002804 1.3e-14 84.3 256 35.9
Aa31LG5G7520 Aethionema arabicum HOM05D002619 ORTHO05D002804 6.6e-14 82.0 227 37.4
Dinv32845 Davidia involucrata HOM05D002619 ORTHO05D002804 6.6e-14 82.0 310 32.9
CsaV3_1G033710 Cucumis sativus L. HOM05D002619 ORTHO05D002804 2.5e-13 80.1 234 37.6
MELO3C020695.2 Cucumis melo HOM05D002619 ORTHO05D002804 4.3e-13 79.3 241 36.5
CiPaw.13G099700 Carya illinoinensis HOM05D002619 ORTHO05D002804 7.3e-13 78.6 248 37.5
Sed0024909 Sechium edule HOM05D002619 ORTHO05D002804 7.3e-13 78.6 282 29.4
Thecc.09G328300 Theobroma cacao HOM05D002619 ORTHO05D002804 9.5e-13 78.2 320 33.1
Duzib170G0200 Durio zibethinus HOM05D002619 ORTHO05D002804 1.2e-12 77.8 243 35.8
CSS0041199 Camellia sinensis var. sinensis HOM05D002619 ORTHO05D002804 3.6e-12 76.3 247 34.8
Hma1.2p1_0035F.1_g022040 Hydrangea macrophylla HOM05D002619 ORTHO05D002804 3.6e-12 76.3 262 34.4
QL01p033488 Quercus lobata HOM05D002619 ORTHO05D002804 3.6e-12 76.3 254 36.2
PGSC0003DMG400015561 Solanum tuberosum HOM05D002619 ORTHO05D002804 3.6e-12 76.3 220 30.0
THA.LOC104826341 Tarenaya hassleriana HOM05D002619 ORTHO05D002804 6.2e-12 75.5 274 30.3
Nitab4.5_0003179g0040 Nicotiana tabacum HOM05D002619 ORTHO05D002804 8.0e-12 75.1 255 29.4
Nitab4.5_0003179g0060 Nicotiana tabacum HOM05D002619 ORTHO05D002804 8.0e-12 75.1 279 31.5
Solyc06g005300.4 Solanum lycopersicum HOM05D002619 ORTHO05D002804 1.0e-11 74.7 262 33.6
TAR623G0548 Trochodendron aralioides HOM05D002619 ORTHO05D002804 1.0e-11 74.7 255 33.3
CAN.G820.11 Capsicum annuum HOM05D002619 ORTHO05D002804 1.8e-11 73.9 219 31.1
Eucgr.B02404 Eucalyptus grandis HOM05D002619 ORTHO05D002804 1.8e-11 73.9 325 31.7
Peaxi162Scf00406g00007 Petunia axillaris HOM05D002619 ORTHO05D002804 1.8e-11 73.9 227 31.3
Rhsim13G0087400 Rhododendron simsii HOM05D002619 ORTHO05D002804 1.8e-11 73.9 275 32.7
PGSC0003DMG400010881 Solanum tuberosum HOM05D002619 ORTHO05D002804 1.8e-11 73.9 206 35.9
Manes.11G134700 Manihot esculenta HOM05D002619 ORTHO05D002804 2.3e-11 73.6 273 33.7
Sabra06G0201000 Salix brachista HOM05D002619 ORTHO05D002804 2.3e-11 73.6 215 32.1
Sed0011374 Sechium edule HOM05D002619 ORTHO05D002804 2.3e-11 73.6 244 34.4
Nitab4.5_0000610g0250 Nicotiana tabacum HOM05D002619 ORTHO05D002804 3.1e-11 73.2 211 35.5
Lsat_1_v5_gn_5_166460 Lactuca sativa HOM05D002619 ORTHO05D002804 5.2e-11 72.4 236 33.5
TWI75G1695 Tripterygium wilfordii HOM05D002619 ORTHO05D002804 5.2e-11 72.4 230 34.8
Actinidia37246 Actinidia chinensis HOM05D002619 ORTHO05D002804 8.9e-11 71.6 288 33.7
CiPaw.14G072600 Carya illinoinensis HOM05D002619 ORTHO05D002804 8.9e-11 71.6 284 34.5
Cc01_g04170 Coffea canephora HOM05D002619 ORTHO05D002804 8.9e-11 71.6 246 30.5
CsaV3_6G022160 Cucumis sativus L. HOM05D002619 ORTHO05D002804 8.9e-11 71.6 256 32.0
Cpa.g.sc3.155 Carica papaya HOM05D003457 ORTHO05D009249 1.2e-10 71.2 208 36.1
PGSC0003DMG400015562 Solanum tuberosum HOM05D002619 ORTHO05D002804 1.5e-10 70.9 256 28.9
Potri.009G027100 Populus trichocarpa HOM05D002619 ORTHO05D002804 2.6e-10 70.1 315 27.9
Sabra16G0141400 Salix brachista HOM05D002619 ORTHO05D002804 2.6e-10 70.1 277 31.8
TWI31G0042 Tripterygium wilfordii HOM05D002619 ORTHO05D002804 3.4e-10 69.7 234 26.9
CANSAT54G2555 Cannabis sativa HOM05D002619 ORTHO05D002804 4.4e-10 69.3 249 30.5
ClCG02G020460 Citrullus lanatus HOM05D002619 ORTHO05D002804 4.4e-10 69.3 250 33.2
Gorai.001G107800 Gossypium raimondii HOM05D002619 ORTHO05D002804 4.4e-10 69.3 165 34.5
Nitab4.5_0000610g0270 Nicotiana tabacum HOM05D002619 ORTHO05D002804 4.4e-10 69.3 219 31.5
Nitab4.5_0011620g0010 Nicotiana tabacum HOM05D002619 ORTHO05D002804 4.4e-10 69.3 283 30.4
CAN.G241.40 Capsicum annuum HOM05D002619 ORTHO05D002804 5.8e-10 68.9 231 34.6
Nn2g10492 Nelumbo nucifera HOM05D002619 ORTHO05D002804 7.5e-10 68.6 257 34.2
Nitab4.5_0000610g0280 Nicotiana tabacum HOM05D002619 ORTHO05D002804 7.5e-10 68.6 210 29.5
Sopen06g001280 Solanum pennellii HOM05D002619 ORTHO05D002804 7.5e-10 68.6 198 35.4
Oeu040288.1 Olea europaea HOM05D002619 ORTHO05D002804 9.8e-10 68.2 217 35.5
Atru.chr3.3814 Acer truncatum HOM05D002619 ORTHO05D002804 1.3e-09 67.8 258 32.2
MELO3C013675.2 Cucumis melo HOM05D002619 ORTHO05D002804 1.3e-09 67.8 246 32.1
Nitab4.5_0003179g0010 Nicotiana tabacum HOM05D002619 ORTHO05D002804 1.3e-09 67.8 211 30.3
Lj1A161T60 Lonicera japonica HOM05D002619 ORTHO05D002804 2.2e-09 67.0 189 30.7
Prupe.6G085300 Prunus persica HOM05D002619 ORTHO05D002804 2.2e-09 67.0 326 30.7
Potri.001G235200 Populus trichocarpa HOM05D002619 ORTHO05D002804 2.9e-09 66.6 283 28.6
vmacro03117 Vaccinium macrocarpon HOM05D002619 ORTHO05D002804 2.9e-09 66.6 205 36.6
ECA248G0080 Erigeron canadensis HOM05D002619 ORTHO05D002804 3.7e-09 66.2 234 34.2
Potri.006G256801 Populus trichocarpa HOM05D002619 ORTHO05D002804 3.7e-09 66.2 221 35.7
TWI79G1700 Tripterygium wilfordii HOM05D002619 ORTHO05D002804 3.7e-09 66.2 239 33.5
Hund18942 Selenicereus undatus HOM05D002619 ORTHO05D002804 6.4e-09 65.5 233 29.6
SGA_v2.0_scaffold81G26088 Striga asiatica HOM05D002619 ORTHO05D002804 6.4e-09 65.5 175 35.4
PSO206G0036 Papaver somniferum HOM05D002619 ORTHO05D002804 8.3e-09 65.1 305 29.2
Carub.0004s0894 Capsella rubella HOM05D002307 ORTHO05D002378 1.1e-08 64.7 215 29.8
Gohir.D07G099900 Gossypium hirsutum HOM05D002619 ORTHO05D002804 1.1e-08 64.7 169 34.3
CDE02G0555 Ceratophyllum demersum HOM05D002619 ORTHO05D002804 1.4e-08 64.3 187 37.4
PSO339G4672 Papaver somniferum HOM05D002619 ORTHO05D002804 1.4e-08 64.3 246 30.5
Nitab4.5_0000070g0090 Nicotiana tabacum HOM05D002619 ORTHO05D002804 1.9e-08 63.9 225 36.0
HanXRQChr11g0340291 Helianthus annuus HOM05D002619 ORTHO05D002804 3.2e-08 63.2 227 28.6
MSTRG.12631 Avicennia marina HOM05D002619 ORTHO05D002804 4.1e-08 62.8 217 31.8
Oeu062318.1 Olea europaea HOM05D002619 ORTHO05D002804 4.1e-08 62.8 261 29.5
EL10Ac7g15959 Beta vulgaris HOM05D002619 ORTHO05D002804 9.2e-08 61.6 236 32.6
MBI14_g29800_MAGBIO Magnolia biondii HOM05D002619 ORTHO05D002804 9.2e-08 61.6 246 34.6
Hund05001 Selenicereus undatus HOM05D002619 ORTHO05D002804 9.2e-08 61.6 269 27.1
MSTRG.21180 Avicennia marina HOM05D002619 ORTHO05D002804 1.6e-07 60.8 231 33.3
CDE09G0663 Ceratophyllum demersum HOM05D002619 ORTHO05D002920 1.6e-07 60.8 176 37.5
arahy.Tifrunner.gnm1.ann1.S371Q2 Arachis hypogaea HOM05D002619 ORTHO05D002804 2.0e-07 60.5 239 30.5
Eucgr.B00641 Eucalyptus grandis HOM05D002619 ORTHO05D002804 2.0e-07 60.5 220 35.5
Peaxi162Scf00356g00031 Petunia axillaris HOM05D002619 ORTHO05D002804 2.0e-07 60.5 219 33.8
Prupe.2G205900 Prunus persica HOM05D002307 ORTHO05D002378 2.0e-07 60.5 196 35.7
Aa31LG5G8000 Aethionema arabicum HOM05D002307 ORTHO05D002378 3.5e-07 59.7 183 34.4
AT2G28140 Arabidopsis thaliana HOM05D002307 ORTHO05D002378 3.5e-07 59.7 197 28.4
Sabra06G0200800 Salix brachista HOM05D002619 ORTHO05D002804 3.5e-07 59.7 197 31.5
SalBow2G0511 Salvia bowleyana HOM05D002619 ORTHO05D002804 3.5e-07 59.7 221 35.7
Sopen11g030810 Solanum pennellii HOM05D002619 ORTHO05D002804 3.5e-07 59.7 171 32.2
Gohir.A03G038401 Gossypium hirsutum HOM05D002619 ORTHO05D002804 4.6e-07 59.3 65 47.7
HanXRQChr01g0009911 Helianthus annuus HOM05D002619 ORTHO05D002804 4.6e-07 59.3 229 27.5
CSS0018989 Camellia sinensis var. sinensis HOM05D002307 ORTHO05D002378 6.0e-07 58.9 186 29.6
Haze_24026 Corylus avellana HOM05D002619 ORTHO05D002804 6.0e-07 58.9 222 34.2
Solyc11g073180.2 Solanum lycopersicum HOM05D002619 ORTHO05D002804 6.0e-07 58.9 171 31.0
TWI59G0134 Tripterygium wilfordii HOM05D002619 ORTHO05D002804 7.8e-07 58.5 213 32.4
Ah.08g214850 Amaranthus hybridus HOM05D002619 ORTHO05D002804 1.0e-06 58.2 227 27.8
arahy.Tifrunner.gnm1.ann1.6E5JYA Arachis hypogaea HOM05D002619 ORTHO05D002804 1.0e-06 58.2 248 31.0
SGA_v2.0_scaffold134G34714 Striga asiatica HOM05D002619 ORTHO05D002804 1.0e-06 58.2 176 28.4
TAR369G0856 Trochodendron aralioides HOM05D002619 ORTHO05D002804 1.0e-06 58.2 251 30.3
AUR62009629 Chenopodium quinoa HOM05D002619 ORTHO05D002804 1.3e-06 57.8 236 28.8
MD07G1167100 Malus domestica HOM05D002307 ORTHO05D002378 1.3e-06 57.8 191 35.6
Sc12g0001720 Simmondsia chinensis HOM05D002619 ORTHO05D002804 1.3e-06 57.8 191 31.9
MD03G1100400 Malus domestica HOM05D002619 ORTHO05D002804 1.7e-06 57.4 326 28.8
Rhsim01G0224500 Rhododendron simsii HOM05D002619 ORTHO05D002804 1.7e-06 57.4 257 33.9
Sabra09G0018200 Salix brachista HOM05D002619 ORTHO05D002804 1.7e-06 57.4 266 29.3
CiPaw.01G266500 Carya illinoinensis HOM05D002307 ORTHO05D002378 3.0e-06 56.6 202 32.7
Lalb_Chr24g0394911 Lupinus albus HOM05D002307 ORTHO05D002378 3.0e-06 56.6 226 33.2
SalBow1G2722 Salvia bowleyana HOM05D002619 ORTHO05D002804 3.0e-06 56.6 195 30.8
SalBow3G1374 Salvia bowleyana HOM05D002619 ORTHO05D002804 3.0e-06 56.6 195 30.8
Sp4g10950 Schrenkiella parvula HOM05D002307 ORTHO05D002378 3.0e-06 56.6 192 29.2
HPP92_012580 Vanilla planifolia HOM05D002619 ORTHO05D002804 3.0e-06 56.6 233 24.5
MD01G1100200 Malus domestica HOM05D002307 ORTHO05D002378 3.9e-06 56.2 189 36.0
Glyma.10G196500 Glycine max HOM05D002307 ORTHO05D002378 5.0e-06 55.8 212 33.5
RcHm_v2.0_Chr5g0062781 Rosa chinensis HOM05D002619 ORTHO05D002804 6.6e-06 55.5 253 29.6
THA.LOC104800578 Tarenaya hassleriana HOM05D002307 ORTHO05D002378 6.6e-06 55.5 192 33.9
THA.LOC104826385 Tarenaya hassleriana HOM05D002307 ORTHO05D002378 6.6e-06 55.5 192 30.2
AUR62001841 Chenopodium quinoa HOM05D002619 ORTHO05D002804 8.6e-06 55.1 262 26.7
Migut.N02660 Erythranthe guttata HOM05D002619 ORTHO05D002804 8.6e-06 55.1 214 29.4
HanXRQChr08g0228281 Helianthus annuus HOM05D002619 ORTHO05D002804 8.6e-06 55.1 199 30.7
MD11G1114400 Malus domestica HOM05D002619 ORTHO05D002804 8.6e-06 55.1 244 32.0


User provided reference genes

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