Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36206 Brassica carinata HOM05D004887 ORTHO05D006168 2.0e-200 702.2 357 100.0
BraA10t43799Z Brassica rapa HOM05D004887 ORTHO05D006168 1.9e-198 695.7 357 99.2
BcaC04g19652 Brassica carinata HOM05D004887 ORTHO05D006168 2.5e-198 695.3 357 98.9
C09p52470 Brassica napus HOM05D004887 ORTHO05D006168 2.5e-198 695.3 357 98.9
BolC9t58114H Brassica oleracea HOM05D004887 ORTHO05D006168 2.5e-198 695.3 357 98.9
A10p17180 Brassica napus HOM05D004887 ORTHO05D006168 7.3e-198 693.7 357 98.9
Thhalv10013947m.g Eutrema salsugineum HOM05D004887 ORTHO05D006168 4.4e-195 684.5 357 96.6
Sp6g21640 Schrenkiella parvula HOM05D004887 ORTHO05D006168 7.5e-195 683.7 357 96.4
AT5G59960 Arabidopsis thaliana HOM05D004887 ORTHO05D006168 4.6e-192 674.5 360 95.8
AL8G36530 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 5.2e-188 661.0 387 89.7
AL781U10010 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 4.9e-186 654.4 362 93.1
A03p11380 Brassica napus HOM05D004887 ORTHO05D006168 2.4e-185 652.1 358 93.3
Aa31LG1G12090 Aethionema arabicum HOM05D004887 ORTHO05D006168 3.1e-180 635.2 359 90.5
THA.LOC104799466 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 3.0e-175 618.6 356 87.4
Cpa.g.sc190.13 Carica papaya HOM05D004887 ORTHO05D006168 6.4e-162 574.3 348 82.5
COL.COLO4_18471 Corchorus olitorius HOM05D004887 ORTHO05D006168 1.3e-157 560.1 349 79.4
CANSAT54G1644 Cannabis sativa HOM05D004887 ORTHO05D006168 3.1e-156 555.4 357 78.2
Prupe.6G081500 Prunus persica HOM05D004887 ORTHO05D006168 5.3e-156 554.7 349 78.2
RcHm_v2.0_Chr5g0063631 Rosa chinensis HOM05D004887 ORTHO05D006168 6.9e-156 554.3 343 79.6
PGR102G2111 Punica granatum HOM05D004887 ORTHO05D006168 9.0e-156 553.9 349 77.7
Dinv32870 Davidia involucrata HOM05D004887 ORTHO05D006168 1.5e-155 553.1 349 78.2
GSVIVG01025008001 Vitis vinifera HOM05D004887 ORTHO05D006168 2.6e-155 552.4 353 77.9
MD11G1143700 Malus domestica HOM05D004887 ORTHO05D006168 3.4e-155 552.0 349 77.7
MD03G1097100 Malus domestica HOM05D004887 ORTHO05D006168 7.6e-155 550.8 349 78.5
Potri.001G237000 Populus trichocarpa HOM05D004887 ORTHO05D006168 7.6e-155 550.8 357 77.0
Glyma.11G141400 Glycine max HOM05D004887 ORTHO05D006168 1.7e-154 549.7 346 78.3
Hma1.2p1_0624F.1_g191380 Hydrangea macrophylla HOM05D004887 ORTHO05D006168 6.4e-154 547.7 343 79.3
CiPaw.13G097700 Carya illinoinensis HOM05D004887 ORTHO05D006168 1.1e-153 547.0 358 76.3
Migut.D02114 Erythranthe guttata HOM05D004887 ORTHO05D006168 4.2e-153 545.0 353 75.4
Gohir.D03G128400 Gossypium hirsutum HOM05D004887 ORTHO05D006168 4.2e-153 545.0 357 75.1
Gohir.A03G039700 Gossypium hirsutum HOM05D004887 ORTHO05D006168 9.3e-153 543.9 356 75.3
FAN21G1310 Fragaria x ananassa HOM05D004887 ORTHO05D006168 2.1e-152 542.7 343 78.7
Ciclev10028710m.g Citrus clementina HOM05D004887 ORTHO05D006168 2.7e-152 542.3 355 75.2
FvH4_3g35470 Fragaria vesca HOM05D004887 ORTHO05D006168 2.7e-152 542.3 343 78.7
Migut.G01105 Erythranthe guttata HOM05D004887 ORTHO05D006168 3.5e-152 542.0 348 75.0
Nitab4.5_0000610g0150 Nicotiana tabacum HOM05D004887 ORTHO05D006168 3.5e-152 542.0 352 75.0
TPR.G10217 Trifolium pratense HOM05D004887 ORTHO05D006168 3.5e-152 542.0 351 76.4
Gorai.003G135100 Gossypium raimondii HOM05D004887 ORTHO05D006168 7.9e-152 540.8 356 75.0
Migut.G01142 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.3e-151 540.0 348 74.7
VMungo1127G0043 Vigna mungo HOM05D004887 ORTHO05D006168 1.3e-151 540.0 351 76.1
Eucgr.B02388 Eucalyptus grandis HOM05D004887 ORTHO05D006168 2.3e-151 539.3 349 76.8
Phvul.011G065900 Phaseolus vulgaris HOM05D004887 ORTHO05D006168 3.0e-151 538.9 354 75.1
Potri.009G028500 Populus trichocarpa HOM05D004887 ORTHO05D006168 3.0e-151 538.9 357 75.1
Glyma.12G064800 Glycine max HOM05D004887 ORTHO05D006168 5.1e-151 538.1 346 77.5
DCAR_018895 Daucus carota HOM05D004887 ORTHO05D006168 6.6e-151 537.7 350 74.9
Medtr4g063570 Medicago truncatula HOM05D004887 ORTHO05D006168 8.7e-151 537.3 346 75.4
TAR369G0226 Trochodendron aralioides HOM05D004887 ORTHO05D006168 1.5e-150 536.6 355 75.8
Manes.04G032300 Manihot esculenta HOM05D004887 ORTHO05D006168 2.5e-150 535.8 358 75.4
Lalb_Chr01g0003761 Lupinus albus HOM05D004887 ORTHO05D006168 5.6e-150 534.6 343 76.7
Solyc11g073300.2 Solanum lycopersicum HOM05D004887 ORTHO05D006168 1.6e-149 533.1 347 75.2
CAN.G661.4 Capsicum annuum HOM05D004887 ORTHO05D006168 4.8e-149 531.6 344 75.0
PSO384G2944 Papaver somniferum HOM05D004887 ORTHO05D006168 4.8e-149 531.6 351 74.4
Sopen11g030920 Solanum pennellii HOM05D004887 ORTHO05D006168 4.8e-149 531.6 347 74.6
Duzib150G1309 Durio zibethinus HOM05D004887 ORTHO05D006168 6.2e-149 531.2 356 74.7
arahy.Tifrunner.gnm1.ann1.31UC9J Arachis hypogaea HOM05D004887 ORTHO05D006168 2.4e-148 529.3 342 74.3
PSO339G5095 Papaver somniferum HOM05D004887 ORTHO05D006168 2.4e-148 529.3 351 74.1
Aqoxy4G02983 Aquilegia oxysepala HOM05D004887 ORTHO05D006168 3.1e-148 528.9 340 77.1
arahy.Tifrunner.gnm1.ann1.1V42NR Arachis hypogaea HOM05D004887 ORTHO05D006168 6.9e-148 527.7 342 74.0
Lj3g0008400 Lotus japonicus HOM05D004887 ORTHO05D006168 6.9e-148 527.7 346 75.1
Manes.11G133000 Manihot esculenta HOM05D004887 ORTHO05D006168 6.9e-148 527.7 358 75.1
MBI14_g18541_MAGBIO Magnolia biondii HOM05D004887 ORTHO05D006168 9.0e-148 527.3 351 76.9
Actinidia37217 Actinidia chinensis HOM05D004887 ORTHO05D006168 5.8e-147 524.6 350 75.1
CsaV3_1G033620 Cucumis sativus L. HOM05D004887 ORTHO05D006168 7.6e-147 524.2 354 73.2
HanXRQChr04g0107001 Helianthus annuus HOM05D004887 ORTHO05D006168 9.9e-147 523.9 349 73.1
Oeu041027.1 Olea europaea HOM05D004887 ORTHO05D006168 1.2e-144 516.9 348 72.7
Nn2g12934 Nelumbo nucifera HOM05D004887 ORTHO05D006168 2.1e-144 516.2 345 74.8
Sc21g0005570 Simmondsia chinensis HOM05D004887 ORTHO05D006168 2.7e-144 515.8 346 72.8
Hund18927 Selenicereus undatus HOM05D004887 ORTHO05D006168 6.0e-144 514.6 349 71.9
Migut.N02667 Erythranthe guttata HOM05D004887 ORTHO05D006168 1.3e-143 513.5 350 72.9
Cc01_g12500 Coffea canephora HOM05D004887 ORTHO05D006168 1.8e-143 513.1 343 73.5
Duzib168G0637 Durio zibethinus HOM05D004887 ORTHO05D006168 3.9e-143 511.9 356 72.8
ECA247G3571 Erigeron canadensis HOM05D004887 ORTHO05D006168 1.1e-142 510.4 343 71.4
Gorai.004G004400 Gossypium raimondii HOM05D004887 ORTHO05D006168 1.5e-142 510.0 356 70.5
HanXRQChr06g0175771 Helianthus annuus HOM05D004887 ORTHO05D006168 3.3e-142 508.8 338 74.0
Lsat_1_v5_gn_8_77921 Lactuca sativa HOM05D004887 ORTHO05D006168 3.3e-142 508.8 339 73.2
EL10Ac7g15978 Beta vulgaris HOM05D004887 ORTHO05D006168 2.8e-141 505.8 342 71.6
ClCG03G001950 Citrullus lanatus HOM05D004887 ORTHO05D006168 2.8e-141 505.8 380 67.9
Lsat_1_v5_gn_9_22360 Lactuca sativa HOM05D004887 ORTHO05D006168 2.8e-141 505.8 339 72.3
Carub.0008s2049 Capsella rubella HOM05D004887 ORTHO05D006168 3.7e-141 505.4 256 97.3
Gohir.D08G010900 Gossypium hirsutum HOM05D004887 ORTHO05D006168 8.1e-141 504.2 345 71.0
arahy.Tifrunner.gnm1.ann1.LTG2DU Arachis hypogaea HOM05D004887 ORTHO05D006168 2.0e-139 499.6 372 67.2
BraA03t10452Z Brassica rapa HOM05D004887 ORTHO05D006168 3.4e-139 498.8 256 95.7
MSTRG.17840 Avicennia marina HOM05D004887 ORTHO05D006168 5.8e-139 498.0 354 70.1
Peaxi162Scf00406g00137 Petunia axillaris HOM05D004887 ORTHO05D006168 3.8e-138 495.4 352 69.0
TWI79G0894 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 1.4e-137 493.4 295 80.3
Nitab4.5_0003782g0060 Nicotiana tabacum HOM05D004887 ORTHO05D006168 1.6e-136 490.0 352 69.3
SalBow3G3342 Salvia bowleyana HOM05D004887 ORTHO05D006168 8.7e-135 484.2 377 65.8
HPP92_015526 Vanilla planifolia HOM05D004887 ORTHO05D006168 5.7e-134 481.5 348 69.3
THA.LOC104810819 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 6.9e-132 474.6 304 80.3
Os01g0151600 Oryza sativa ssp. japonica HOM05D004887 ORTHO05D006168 2.6e-131 472.6 348 68.1
CSS0023093 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 2.2e-130 469.5 329 72.0
Psat7g217880 Pisum sativum HOM05D004887 ORTHO05D006168 3.8e-130 468.8 379 65.2
Lj1A157T41 Lonicera japonica HOM05D004887 ORTHO05D006168 8.5e-130 467.6 325 72.0
MELO3C020709.2 Cucumis melo HOM05D004887 ORTHO05D006168 1.4e-129 466.8 300 75.3
Atru.chr3.3838 Acer truncatum HOM05D004887 ORTHO05D006168 4.2e-129 465.3 297 79.1
Rhsim13G0085300 Rhododendron simsii HOM05D001446 ORTHO05D001360 1.2e-128 463.8 395 61.5
QL01p032955 Quercus lobata HOM05D004887 ORTHO05D006168 3.6e-128 462.2 299 78.3
Cfa011464 Carpinus fangiana HOM05D004887 ORTHO05D006168 4.6e-128 461.8 350 69.1
FAN11G2539 Fragaria x ananassa HOM05D004887 ORTHO05D006168 1.1e-126 457.2 340 70.6
Zm00001eb124290 Zea mays HOM05D004887 ORTHO05D006168 1.1e-126 457.2 347 66.0
Haze_24049 Corylus avellana HOM05D004887 ORTHO05D006168 2.5e-126 456.1 304 75.7
Duzib170G0837 Durio zibethinus HOM05D004887 ORTHO05D006168 2.5e-126 456.1 371 64.4
Sed0009981 Sechium edule HOM05D004887 ORTHO05D006168 2.5e-126 456.1 280 76.8
AUR62009609 Chenopodium quinoa HOM05D004887 ORTHO05D006168 7.4e-126 454.5 313 71.6
arahy.Tifrunner.gnm1.ann1.RHUE9Y Arachis hypogaea HOM05D004887 ORTHO05D006168 3.7e-125 452.2 304 71.1
FAN25G2556 Fragaria x ananassa HOM05D004887 ORTHO05D006168 4.8e-125 451.8 339 69.6
CSS0048955 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 3.1e-124 449.1 352 67.3
SGA_v2.0_scaffold61G21266 Striga asiatica HOM05D004887 ORTHO05D006168 1.6e-120 436.8 324 68.8
CDE07G1169 Ceratophyllum demersum HOM05D004887 ORTHO05D006168 3.3e-118 429.1 314 68.5
AUR62001822 Chenopodium quinoa HOM05D004887 ORTHO05D006168 8.2e-117 424.5 296 70.9
ATR0559G318 Amborella trichopoda HOM05D004887 ORTHO05D006168 5.0e-114 415.2 296 70.6
Psat7g218040 Pisum sativum HOM05D004887 ORTHO05D006168 1.4e-111 407.1 296 69.3
TWI31G1179 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 2.6e-110 402.9 361 60.4
unitig_899.g14894 Utricularia gibba HOM05D004887 ORTHO05D006168 9.1e-108 394.4 307 66.4
Lj2C1057T15 Lonicera japonica HOM05D004887 ORTHO05D006168 2.5e-105 386.3 230 80.0
CARHR273590 Cardamine hirsuta HOM05D004887 ORTHO05D006168 2.1e-104 383.3 192 98.4
Sabra16G0142900 Salix brachista HOM05D001446 ORTHO05D001360 2.3e-103 379.8 399 56.1
FAN16G2077 Fragaria x ananassa HOM05D001446 ORTHO05D001360 4.0e-103 379.0 257 75.9
Pp3c8_24390 Physcomitrium patens HOM05D004887 ORTHO05D006168 1.2e-102 377.5 344 54.7
Pp3c24_20310 Physcomitrium patens HOM05D004887 ORTHO05D006168 3.3e-102 375.9 342 55.6
Thecc.09G325700 Theobroma cacao HOM05D004887 ORTHO05D006168 3.1e-100 369.4 255 74.5
Actinidia07046 Actinidia chinensis HOM05D004887 ORTHO05D006168 5.9e-99 365.2 253 71.9
Ca_19183_v3 Cicer arietinum L. HOM05D004887 ORTHO05D006168 1.0e-98 364.4 261 71.6
TAR623G0510 Trochodendron aralioides HOM05D004887 ORTHO05D006168 3.6e-96 355.9 252 74.2
vmacro03096 Vaccinium macrocarpon HOM05D004887 ORTHO05D006168 1.2e-94 350.9 310 59.7
SMO118G0033 Selaginella moellendorffii HOM05D004887 ORTHO05D006168 4.4e-94 349.0 339 54.0
Mapoly0001s0555 Marchantia polymorpha HOM05D004887 ORTHO05D006168 2.2e-93 346.7 349 53.0
Dinv03548 Davidia involucrata HOM05D004887 ORTHO05D006168 2.2e-90 336.7 234 72.2
AagrBONN_evm.TU.Sc2ySwM_344.5355 Anthoceros agrestis HOM05D004887 ORTHO05D006168 4.4e-86 322.4 277 56.3
Nn2g10420 Nelumbo nucifera HOM05D004887 ORTHO05D006168 7.5e-86 321.6 222 73.9
SalBow2G3032 Salvia bowleyana HOM05D004887 ORTHO05D006168 7.3e-81 305.1 259 61.4
CBR_g46654 Chara braunii HOM05D004887 ORTHO05D006168 8.0e-80 301.6 325 48.0
CARHR273600 Cardamine hirsuta HOM05D004887 ORTHO05D006168 1.2e-78 297.7 166 94.6
Gohir.A08G000181 Gossypium hirsutum HOM05D004887 ORTHO05D006168 2.0e-78 297.0 226 66.4
Psat7g218000 Pisum sativum HOM05D004887 ORTHO05D006168 1.1e-76 291.2 195 73.8
PSO384G0451 Papaver somniferum HOM05D004887 ORTHO05D006168 1.3e-61 241.1 191 66.5
Nitab4.5_0000610g0050 Nicotiana tabacum HOM05D004887 ORTHO05D006168 1.6e-56 224.2 363 39.7
Sabra09G0019700 Salix brachista HOM05D004887 ORTHO05D006168 1.9e-44 184.1 184 58.2
Carub.0008s2068 Capsella rubella HOM05D004887 ORTHO05D006168 8.7e-42 175.3 100 86.0
C06p04980 Brassica napus HOM05D004887 ORTHO05D006168 1.4e-36 157.9 75 96.0
C03p13170 Brassica napus HOM05D004887 ORTHO05D006168 1.9e-36 157.5 75 98.7
A02p35440 Brassica napus HOM05D004887 ORTHO05D006168 3.2e-36 156.8 75 96.0
BolC6t35622H Brassica oleracea HOM05D004887 ORTHO05D006168 3.2e-36 156.8 76 97.4
BraA02t08545Z Brassica rapa HOM05D004887 ORTHO05D006168 3.2e-36 156.8 75 96.0
C03p13130 Brassica napus HOM05D004887 ORTHO05D006168 5.8e-30 136.0 97 75.3
BolC3t13778H Brassica oleracea HOM05D004887 ORTHO05D006168 9.9e-30 135.2 63 98.4
Duzib205G1865 Durio zibethinus HOM05D004887 ORTHO05D006168 2.5e-25 120.6 136 51.5
HanXRQChr05g0134321 Helianthus annuus HOM05D004887 ORTHO05D025733 1.4e-07 61.6 46 58.7
Lj1A771T11 Lonicera japonica HOM05D004887 ORTHO05D234499 1.8e-07 61.2 40 75.0


User provided reference genes

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