Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36164 Brassica carinata HOM05D005686 ORTHO05D006798 2.8e-103 378.6 193 100.0
A10p16070 Brassica napus HOM05D005686 ORTHO05D006798 9.3e-99 363.6 193 96.9
BraA10t43622Z Brassica rapa HOM05D005686 ORTHO05D006798 9.3e-99 363.6 193 96.9
BcaC04g19906 Brassica carinata HOM05D005686 ORTHO05D006798 6.0e-98 360.9 193 95.3
BolC9t57855H Brassica oleracea HOM05D005686 ORTHO05D006798 6.0e-98 360.9 193 95.3
BraA03t10552Z Brassica rapa HOM05D005686 ORTHO05D006798 8.1e-95 350.5 192 92.7
C09p50020 Brassica napus HOM05D005686 ORTHO05D006798 6.9e-94 347.4 185 95.1
A03p12400 Brassica napus HOM05D005686 ORTHO05D006798 2.9e-92 342.0 192 90.1
C03p14560 Brassica napus HOM05D005686 ORTHO05D006798 2.9e-92 342.0 193 90.2
BolC3t13898H Brassica oleracea HOM05D005686 ORTHO05D006798 1.1e-91 340.1 192 89.6
Sp6g19800 Schrenkiella parvula HOM05D005686 ORTHO05D006798 3.2e-91 338.6 193 90.7
BcaB01g04476 Brassica carinata HOM05D005686 ORTHO05D006798 5.1e-89 331.3 193 88.6
Thhalv10014732m.g Eutrema salsugineum HOM05D005686 ORTHO05D006798 2.5e-88 328.9 194 88.1
AL8G34220 Arabidopsis lyrata HOM05D005686 ORTHO05D006798 3.7e-87 325.1 194 86.6
BcaB01g04553 Brassica carinata HOM05D005686 ORTHO05D006798 1.1e-86 323.6 197 84.3
Carub.0008s1867 Capsella rubella HOM05D005686 ORTHO05D006798 3.1e-86 322.0 194 87.1
AT5G58110 Arabidopsis thaliana HOM05D005686 ORTHO05D006798 4.5e-85 318.2 194 85.6
CARHR271940 Cardamine hirsuta HOM05D005686 ORTHO05D006798 3.8e-84 315.1 196 85.2
Aa31LG3G13950 Aethionema arabicum HOM05D005244 ORTHO05D006539 3.2e-83 312.0 188 86.2
THA.LOC104811843 Tarenaya hassleriana HOM05D005686 ORTHO05D006798 1.4e-75 286.6 199 74.9
Eucgr.C02152 Eucalyptus grandis HOM05D005686 ORTHO05D006798 6.5e-68 261.2 195 67.2
CiPaw.08G000400 Carya illinoinensis HOM05D005686 ORTHO05D006798 1.2e-66 256.9 193 64.8
Sed0010250 Sechium edule HOM05D005686 ORTHO05D006798 1.6e-66 256.5 193 64.2
Cfa012874 Carpinus fangiana HOM05D005686 ORTHO05D006798 4.7e-66 255.0 190 68.4
Potri.006G080900 Populus trichocarpa HOM05D005686 ORTHO05D006798 6.1e-66 254.6 186 67.7
ClCG03G011610 Citrullus lanatus HOM05D005686 ORTHO05D006798 1.0e-65 253.8 196 63.8
Cpa.g.sc46.112 Carica papaya HOM05D005686 ORTHO05D006798 1.4e-65 253.4 193 66.8
Manes.18G145300 Manihot esculenta HOM05D005686 ORTHO05D006798 1.4e-65 253.4 195 64.6
Nitab4.5_0004788g0010 Nicotiana tabacum HOM05D005686 ORTHO05D006798 3.9e-65 251.9 193 65.8
MD04G1000800 Malus domestica HOM05D005686 ORTHO05D006798 8.8e-65 250.8 192 65.6
FvH4_4g00120 Fragaria vesca HOM05D005686 ORTHO05D006798 1.1e-64 250.4 194 65.5
Nitab4.5_0000019g0070 Nicotiana tabacum HOM05D005686 ORTHO05D006798 1.5e-64 250.0 193 65.3
Ciclev10009500m.g Citrus clementina HOM05D005686 ORTHO05D006798 2.6e-64 249.2 195 64.1
Hma1.2p1_0391F.1_g142870 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 2.6e-64 249.2 194 64.9
GSVIVG01034255001 Vitis vinifera HOM05D005686 ORTHO05D006798 2.6e-64 249.2 192 64.6
PGR142G1985 Punica granatum HOM05D005686 ORTHO05D006798 4.4e-64 248.4 193 63.7
FAN17G2251 Fragaria x ananassa HOM05D005686 ORTHO05D006798 9.7e-64 247.3 194 64.9
TWI32G0912 Tripterygium wilfordii HOM05D005686 ORTHO05D006798 1.3e-63 246.9 191 64.4
Cc06_g23520 Coffea canephora HOM05D005686 ORTHO05D006798 2.2e-63 246.1 185 65.9
ECA240G1888 Erigeron canadensis HOM05D005686 ORTHO05D006798 2.8e-63 245.7 192 67.2
Atru.chr7.1021 Acer truncatum HOM05D005686 ORTHO05D006798 3.7e-63 245.4 199 64.3
CANSAT80G2136 Cannabis sativa HOM05D005686 ORTHO05D006798 4.8e-63 245.0 194 62.4
FAN22G1914 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.8e-63 245.0 194 64.9
Gohir.A08G016700 Gossypium hirsutum HOM05D005686 ORTHO05D006798 8.2e-63 244.2 187 67.4
Gorai.004G024000 Gossypium raimondii HOM05D005686 ORTHO05D006798 8.2e-63 244.2 186 67.7
RcHm_v2.0_Chr4g0384721 Rosa chinensis HOM05D005686 ORTHO05D006798 1.1e-62 243.8 193 64.8
Sc23g0005700 Simmondsia chinensis HOM05D005686 ORTHO05D006798 1.4e-62 243.4 191 63.4
COL.COLO4_09003 Corchorus olitorius HOM05D005686 ORTHO05D006798 1.8e-62 243.0 194 64.4
Oeu000268.1 Olea europaea HOM05D005686 ORTHO05D006798 1.8e-62 243.0 190 64.2
Thecc.09G202000 Theobroma cacao HOM05D005686 ORTHO05D006798 1.8e-62 243.0 192 65.1
Lsat_1_v5_gn_7_57081 Lactuca sativa HOM05D005686 ORTHO05D006798 2.4e-62 242.7 192 65.1
TAR383G0056 Trochodendron aralioides HOM05D005686 ORTHO05D006798 3.1e-62 242.3 191 64.4
Gohir.D08G027100 Gossypium hirsutum HOM05D005686 ORTHO05D006798 4.1e-62 241.9 186 66.7
EL10Ac2g03596 Beta vulgaris HOM05D005686 ORTHO05D006798 5.3e-62 241.5 195 62.6
AUR62020755 Chenopodium quinoa HOM05D005686 ORTHO05D006798 1.2e-61 240.4 192 62.5
HanXRQChr03g0066651 Helianthus annuus HOM05D005686 ORTHO05D006798 3.5e-61 238.8 192 65.1
Potri.018G151500 Populus trichocarpa HOM05D005686 ORTHO05D006798 4.5e-61 238.4 192 63.5
Aqoxy7G02566 Aquilegia oxysepala HOM05D005686 ORTHO05D006798 1.3e-60 236.9 191 62.3
Migut.J00862 Erythranthe guttata HOM05D005686 ORTHO05D006798 1.7e-60 236.5 189 63.5
Lj2g0013423 Lotus japonicus HOM05D005686 ORTHO05D006798 1.7e-60 236.5 195 61.0
MSTRG.5975 Avicennia marina HOM05D005686 ORTHO05D006798 2.9e-60 235.7 190 61.6
CSS0031712 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 3.8e-60 235.3 188 61.7
AUR62027958 Chenopodium quinoa HOM05D005686 ORTHO05D006798 5.0e-60 235.0 189 60.3
CSS0027001 Camellia sinensis var. sinensis HOM05D005686 ORTHO05D006798 8.5e-60 234.2 188 61.7
PSO063G6522 Papaver somniferum HOM05D005686 ORTHO05D006798 8.5e-60 234.2 187 61.5
Glyma.01G001000 Glycine max HOM05D005686 ORTHO05D006798 2.5e-59 232.6 199 60.3
Os02g0139100 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 3.2e-59 232.3 192 61.5
Os06g0703800 Oryza sativa ssp. japonica HOM05D005686 ORTHO05D006798 4.2e-59 231.9 189 61.9
PSO170G1777 Papaver somniferum HOM05D005686 ORTHO05D006798 4.2e-59 231.9 187 61.0
Zm00001eb232010 Zea mays HOM05D005686 ORTHO05D006798 5.5e-59 231.5 188 60.6
Glyma.08G359900 Glycine max HOM05D005686 ORTHO05D006798 1.6e-58 229.9 196 59.2
arahy.Tifrunner.gnm1.ann1.G6JDG7 Arachis hypogaea HOM05D005686 ORTHO05D006798 4.7e-58 228.4 194 60.3
Ca_25642_v3 Cicer arietinum L. HOM05D005686 ORTHO05D006798 4.7e-58 228.4 192 59.4
arahy.Tifrunner.gnm1.ann1.1A52WD Arachis hypogaea HOM05D005686 ORTHO05D006798 6.1e-58 228.0 194 60.3
Peaxi162Scf00322g00914 Petunia axillaris HOM05D005686 ORTHO05D006798 6.1e-58 228.0 204 58.8
ATR0626G256 Amborella trichopoda HOM05D005686 ORTHO05D006798 8.0e-58 227.6 191 61.3
QL11p005743 Quercus lobata HOM05D005686 ORTHO05D006798 8.0e-58 227.6 248 51.6
unitig_699.g19254 Utricularia gibba HOM05D005686 ORTHO05D006798 5.2e-57 224.9 192 57.3
HanXRQChr09g0245301 Helianthus annuus HOM05D005686 ORTHO05D006798 8.8e-57 224.2 186 62.4
SGA_v2.0_scaffold21G09585 Striga asiatica HOM05D005686 ORTHO05D006798 1.1e-56 223.8 217 53.5
vmacro20730 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 3.3e-56 222.2 240 52.1
Psat1g052000 Pisum sativum HOM05D005686 ORTHO05D006798 6.3e-55 218.0 191 58.1
MELO3C010013.2 Cucumis melo HOM05D005686 ORTHO05D006798 1.1e-54 217.2 278 45.3
CsaV3_1G044180 Cucumis sativus L. HOM05D005686 ORTHO05D006798 2.6e-53 212.6 153 66.0
DCAR_014582 Daucus carota HOM05D005686 ORTHO05D006798 3.5e-53 212.2 194 57.2
FAN12G3064 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.0e-52 210.7 150 68.7
Lalb_Chr24g0401731 Lupinus albus HOM05D005686 ORTHO05D006798 1.7e-52 209.9 193 52.8
HPP92_017040 Vanilla planifolia HOM05D005686 ORTHO05D006798 6.5e-52 208.0 192 58.3
CAN.G357.2 Capsicum annuum HOM05D005686 ORTHO05D006798 2.5e-51 206.1 142 68.3
Dinv26497 Davidia involucrata HOM05D005686 ORTHO05D006798 4.2e-51 205.3 146 69.9
CDE04G0009 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 1.6e-50 203.4 189 51.9
Duzib170G0214 Durio zibethinus HOM05D005686 ORTHO05D006798 3.6e-50 202.2 195 57.9
Oeu000956.1 Olea europaea HOM05D005686 ORTHO05D006798 4.4e-48 195.3 192 56.2
vmacro20894 Vaccinium macrocarpon HOM05D005686 ORTHO05D006798 4.8e-47 191.8 298 41.6
Medtr6g093220 Medicago truncatula HOM05D005686 ORTHO05D006798 1.4e-46 190.3 187 54.0
Oeu018307.1 Olea europaea HOM05D005686 ORTHO05D006798 2.7e-45 186.0 192 55.7
Prupe.1G000800 Prunus persica HOM05D005686 ORTHO05D006798 4.5e-45 185.3 226 48.2
unitig_899.g15184 Utricularia gibba HOM05D000036 ORTHO05D000095 2.9e-44 182.6 186 50.5
TPR.G21341 Trifolium pratense HOM05D005686 ORTHO05D006798 6.5e-44 181.4 148 58.1
Rhsim01G0102500 Rhododendron simsii HOM05D005686 ORTHO05D006798 3.6e-42 175.6 331 36.6
Gorai.009G341500 Gossypium raimondii HOM05D005686 ORTHO05D006798 4.7e-42 175.3 152 59.2
Gohir.D05G318500 Gossypium hirsutum HOM05D005686 ORTHO05D006798 2.3e-41 172.9 145 61.4
Pp3c5_4250 Physcomitrium patens HOM05D005686 ORTHO05D006798 6.3e-39 164.9 197 47.2
Pp3c16_2550 Physcomitrium patens HOM05D005686 ORTHO05D006798 7.0e-38 161.4 194 47.9
Hma1.2p1_0394F.1_g143240 Hydrangea macrophylla HOM05D005686 ORTHO05D006798 1.2e-37 160.6 123 65.9
SEGI_10084 Sequoiadendron giganteum HOM05D005686 ORTHO05D006798 2.0e-37 159.8 146 54.8
Mapoly0062s0098 Marchantia polymorpha HOM05D005686 ORTHO05D006798 3.5e-37 159.1 195 46.7
MBI13_g46510_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 7.7e-37 157.9 119 65.5
SMO164G0027 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 2.8e-34 149.4 189 43.9
Actinidia07538 Actinidia chinensis HOM05D005686 ORTHO05D006798 6.1e-34 148.3 109 67.0
Hund19347 Selenicereus undatus HOM05D005686 ORTHO05D006798 2.3e-33 146.4 195 45.1
Nn8g41269 Nelumbo nucifera HOM05D005686 ORTHO05D006798 1.7e-28 130.2 102 61.8
Haze_21245 Corylus avellana HOM05D005686 ORTHO05D006798 1.4e-25 120.6 92 64.1
Lju50E1T0 Lonicera japonica HOM05D005686 ORTHO05D006798 1.5e-24 117.1 94 58.5
Oeu021239.2 Olea europaea HOM05D005686 ORTHO05D006798 3.4e-24 115.9 194 41.2
MBI13_g08742_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 4.4e-24 115.5 136 51.5
VMungo0464G1575 Vigna mungo HOM05D005686 ORTHO05D006798 4.4e-24 115.5 99 56.6
CDE07G1048 Ceratophyllum demersum HOM05D005686 ORTHO05D006798 5.8e-24 115.2 121 49.6
BolC8t47587H Brassica oleracea HOM05D005686 ORTHO05D006798 6.0e-21 105.1 54 90.7
BcaC07g37307 Brassica carinata HOM05D005686 ORTHO05D006798 1.3e-20 104.0 52 92.3
C08p07420 Brassica napus HOM05D005686 ORTHO05D006798 1.3e-20 104.0 52 92.3
SMO146G0036 Selaginella moellendorffii HOM05D005686 ORTHO05D006798 1.6e-18 97.1 147 38.8
ClCG04G012860 Citrullus lanatus HOM05D005686 ORTHO05D006798 3.6e-18 95.9 83 57.8
MBI13_g33582_MAGBIO Magnolia biondii HOM05D005686 ORTHO05D006798 1.4e-17 94.0 75 61.3
MCO14G409 Micromonas commoda HOM05D005686 ORTHO05D006798 7.5e-16 88.2 199 34.7
FAN26G0690 Fragaria x ananassa HOM05D005686 ORTHO05D006798 9.8e-16 87.8 89 51.7
FvH4_1g23212 Fragaria vesca HOM05D005686 ORTHO05D006798 1.3e-15 87.4 90 50.0
FAN25G3234 Fragaria x ananassa HOM05D005686 ORTHO05D006798 8.3e-15 84.7 89 47.2
FAN17G2013 Fragaria x ananassa HOM05D005686 ORTHO05D006798 5.4e-14 82.0 89 47.2
SalBow6G6154 Salvia bowleyana HOM05D005686 ORTHO05D006798 1.3e-12 77.4 76 53.9
FvH4_7g03690 Fragaria vesca HOM05D005686 ORTHO05D006798 1.7e-12 77.0 54 66.7
Cre07.g321850 Chlamydomonas reinhardtii HOM05D005686 ORTHO05D006798 3.9e-12 75.9 197 32.5
FAN07G2653 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.1e-11 74.3 52 65.4
arahy.Tifrunner.gnm1.ann1.U8PUWG Arachis hypogaea HOM05D005611 ORTHO05D006852 3.3e-11 72.8 70 57.1
arahy.Tifrunner.gnm1.ann1.11LFFZ Arachis hypogaea HOM05D005686 ORTHO05D006798 9.5e-11 71.2 59 62.7
FAN01G2054 Fragaria x ananassa HOM05D005686 ORTHO05D006798 4.7e-10 68.9 86 48.8
FAN23G2196 Fragaria x ananassa HOM05D005686 ORTHO05D006798 1.4e-09 67.4 49 65.3
SGA_v2.0_scaffold25G11073 Striga asiatica HOM05D005686 ORTHO05D006798 2.9e-07 59.7 107 33.6


User provided reference genes

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