Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36143 Brassica carinata HOM05D004507 ORTHO05D004874 1.9e-84 315.8 163 100.0
A10p15150 Brassica napus HOM05D004507 ORTHO05D004874 2.8e-72 275.4 159 90.6
BraA10t43598Z Brassica rapa HOM05D004507 ORTHO05D004874 2.8e-72 275.4 159 90.6
BcaC04g19929 Brassica carinata HOM05D004507 ORTHO05D004874 3.7e-72 275.0 159 90.6
BolC9t57818H Brassica oleracea HOM05D004507 ORTHO05D004874 3.7e-72 275.0 159 90.6
C09p49660 Brassica napus HOM05D004507 ORTHO05D004874 4.8e-72 274.6 159 90.6
AT5G57780 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 6.7e-66 254.2 167 79.0
AL8G33810 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 8.8e-66 253.8 167 77.8
Thhalv10014877m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 4.3e-65 251.5 158 84.2
Sp6g19460 Schrenkiella parvula HOM05D004507 ORTHO05D004874 1.4e-63 246.5 156 82.1
CARHR271510 Cardamine hirsuta HOM05D004507 ORTHO05D004874 6.1e-59 231.1 158 78.5
Carub.0008s1829 Capsella rubella HOM05D004507 ORTHO05D004874 1.5e-57 226.5 156 80.1
BcaB01g04486 Brassica carinata HOM05D004507 ORTHO05D004874 2.9e-29 132.5 107 69.2
THA.LOC104817812 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 1.6e-27 126.7 166 47.0
Manes.14G147700 Manihot esculenta HOM05D004507 ORTHO05D004874 1.2e-25 120.6 169 45.6
Prupe.1G097600 Prunus persica HOM05D004507 ORTHO05D004874 3.4e-25 119.0 172 45.9
Rhsim01G0012400 Rhododendron simsii HOM05D004507 ORTHO05D004874 8.3e-24 114.4 176 44.3
C03p14810 Brassica napus HOM05D004507 ORTHO05D004874 3.2e-23 112.5 93 68.8
BolC3t13923H Brassica oleracea HOM05D004507 ORTHO05D004874 3.2e-23 112.5 93 68.8
Potri.006G177000 Populus trichocarpa HOM05D004507 ORTHO05D004874 5.4e-23 111.7 182 41.2
Cfa013550 Carpinus fangiana HOM05D004507 ORTHO05D004874 9.2e-23 110.9 185 40.5
Haze_22171 Corylus avellana HOM05D004507 ORTHO05D004874 1.2e-22 110.5 179 41.9
QL02p095594 Quercus lobata HOM05D004507 ORTHO05D004874 1.2e-22 110.5 189 41.3
Potri.018G099100 Populus trichocarpa HOM05D004507 ORTHO05D004874 4.5e-22 108.6 172 43.0
Atru.chr7.491 Acer truncatum HOM05D004507 ORTHO05D004874 5.9e-22 108.2 194 39.2
Duzib187G0534 Durio zibethinus HOM05D004507 ORTHO05D004874 1.0e-21 107.5 178 41.0
CiPaw.07G186500 Carya illinoinensis HOM05D004507 ORTHO05D004874 1.3e-21 107.1 185 41.1
Peaxi162Scf00525g00089 Petunia axillaris HOM05D004507 ORTHO05D004874 2.3e-21 106.3 181 40.9
Thhalv10026358m.g Eutrema salsugineum HOM05D004507 ORTHO05D004874 2.9e-21 105.9 173 38.7
Gohir.D08G255900 Gossypium hirsutum HOM05D004507 ORTHO05D004874 3.9e-21 105.5 163 44.2
Gorai.004G273100 Gossypium raimondii HOM05D004507 ORTHO05D004874 3.9e-21 105.5 166 43.4
Oeu045661.2 Olea europaea HOM05D004507 ORTHO05D004874 3.9e-21 105.5 175 44.0
Dinv42787 Davidia involucrata HOM05D004507 ORTHO05D004874 5.0e-21 105.1 182 41.2
Dinv43314 Davidia involucrata HOM05D004507 ORTHO05D004874 5.0e-21 105.1 182 41.2
COL.COLO4_24287 Corchorus olitorius HOM05D004507 ORTHO05D004874 1.1e-20 104.0 189 40.2
Sabra06G0135200 Salix brachista HOM05D004507 ORTHO05D004874 1.5e-20 103.6 170 40.6
TWI34G1692 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 1.5e-20 103.6 186 40.3
Cpa.g.sc75.20 Carica papaya HOM05D004507 ORTHO05D004874 1.9e-20 103.2 189 38.1
Ciclev10009640m.g Citrus clementina HOM05D004507 ORTHO05D004874 4.3e-20 102.1 180 41.1
PSO782G3560 Papaver somniferum HOM05D004507 ORTHO05D004874 4.3e-20 102.1 181 37.6
Ca_21181_v3 Cicer arietinum L. HOM05D004507 ORTHO05D004874 5.6e-20 101.7 163 42.3
Gohir.A08G235500 Gossypium hirsutum HOM05D004507 ORTHO05D004874 5.6e-20 101.7 158 43.7
Thecc.09G160500 Theobroma cacao HOM05D004507 ORTHO05D004874 5.6e-20 101.7 181 39.8
Lj4g0026981 Lotus japonicus HOM05D004507 ORTHO05D004874 7.3e-20 101.3 183 39.9
PGSC0003DMG400011171 Solanum tuberosum HOM05D004507 ORTHO05D004874 7.3e-20 101.3 182 39.6
Sabra18G0085600 Salix brachista HOM05D004507 ORTHO05D004874 9.5e-20 100.9 173 41.6
Sed0015365 Sechium edule HOM05D004507 ORTHO05D004874 9.5e-20 100.9 160 40.0
Nn8g40236 Nelumbo nucifera HOM05D004507 ORTHO05D004874 1.2e-19 100.5 182 37.4
TWI32G0773 Tripterygium wilfordii HOM05D004507 ORTHO05D004874 1.2e-19 100.5 191 37.2
Duzib168G0769 Durio zibethinus HOM05D004507 ORTHO05D004874 1.6e-19 100.1 185 38.9
Hma1.2p1_0156F.1_g068730 Hydrangea macrophylla HOM05D004507 ORTHO05D004874 2.1e-19 99.8 180 39.4
CiPaw.08G040400 Carya illinoinensis HOM05D004507 ORTHO05D004874 2.8e-19 99.4 181 38.1
Migut.K00276 Erythranthe guttata HOM05D004507 ORTHO05D004874 2.8e-19 99.4 177 37.3
Phvul.003G151300 Phaseolus vulgaris HOM05D004507 ORTHO05D004874 2.8e-19 99.4 168 42.9
THA.LOC104803518 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 2.8e-19 99.4 180 38.3
Dinv41307 Davidia involucrata HOM05D004507 ORTHO05D004874 3.6e-19 99.0 179 40.8
Glyma.13G091500 Glycine max HOM05D004507 ORTHO05D004874 3.6e-19 99.0 182 41.2
Sed0006958 Sechium edule HOM05D004507 ORTHO05D004874 3.6e-19 99.0 175 40.0
Aqoxy7G03243 Aquilegia oxysepala HOM05D004507 ORTHO05D004874 4.7e-19 98.6 177 35.6
Sopen07g002400 Solanum pennellii HOM05D004507 ORTHO05D004874 6.1e-19 98.2 178 39.3
AT4G30410 Arabidopsis thaliana HOM05D004507 ORTHO05D004874 8.0e-19 97.8 181 34.3
Nitab4.5_0002587g0090 Nicotiana tabacum HOM05D004507 ORTHO05D004874 8.0e-19 97.8 183 38.8
CARHR238310 Cardamine hirsuta HOM05D004507 ORTHO05D004874 1.0e-18 97.4 173 34.7
Duzib150G1659 Durio zibethinus HOM05D004507 ORTHO05D004874 1.0e-18 97.4 180 39.4
VMungo1215G3417 Vigna mungo HOM05D004507 ORTHO05D004874 1.0e-18 97.4 170 39.4
AL7G21740 Arabidopsis lyrata HOM05D004507 ORTHO05D004874 1.4e-18 97.1 181 33.7
Gohir.D08G097200 Gossypium hirsutum HOM05D004507 ORTHO05D004874 1.4e-18 97.1 182 40.1
Sp7g28290 Schrenkiella parvula HOM05D004507 ORTHO05D004874 1.4e-18 97.1 175 38.9
TAR625G0362 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.8e-18 96.7 173 39.9
Carub.0007s1019 Capsella rubella HOM05D004507 ORTHO05D004874 2.3e-18 96.3 173 34.7
Nn2g12545 Nelumbo nucifera HOM05D004507 ORTHO05D004874 2.3e-18 96.3 169 42.6
TAR636G1916 Trochodendron aralioides HOM05D004507 ORTHO05D004874 2.3e-18 96.3 179 39.1
Glyma.17G068800 Glycine max HOM05D004507 ORTHO05D004874 3.1e-18 95.9 177 40.7
Nitab4.5_0001427g0130 Nicotiana tabacum HOM05D004507 ORTHO05D004874 3.1e-18 95.9 210 34.3
PGR142G2563 Punica granatum HOM05D004507 ORTHO05D004874 3.1e-18 95.9 184 38.6
ClCG06G012890 Citrullus lanatus HOM05D004507 ORTHO05D004874 4.0e-18 95.5 175 39.4
Gorai.004G104000 Gossypium raimondii HOM05D004507 ORTHO05D004874 4.0e-18 95.5 182 39.6
ECA240G1410 Erigeron canadensis HOM05D004507 ORTHO05D004874 5.2e-18 95.1 184 39.7
MSTRG.10721 Avicennia marina HOM05D004507 ORTHO05D004874 6.8e-18 94.7 171 38.0
Eucgr.C00212 Eucalyptus grandis HOM05D004507 ORTHO05D004874 6.8e-18 94.7 185 37.3
Sed0016375 Sechium edule HOM05D004507 ORTHO05D004874 6.8e-18 94.7 159 38.4
THA.LOC104819987 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 6.8e-18 94.7 176 36.9
TAR626G0275 Trochodendron aralioides HOM05D004507 ORTHO05D004874 6.8e-18 94.7 184 38.6
arahy.Tifrunner.gnm1.ann1.RZ4SGF Arachis hypogaea HOM05D004507 ORTHO05D004874 8.9e-18 94.4 165 41.2
BcaB03g12646 Brassica carinata HOM05D004507 ORTHO05D004874 8.9e-18 94.4 175 37.7
BcaB03g12647 Brassica carinata HOM05D004507 ORTHO05D004874 8.9e-18 94.4 175 37.7
CsaV3_1G029460 Cucumis sativus L. HOM05D004507 ORTHO05D004874 8.9e-18 94.4 185 38.9
TPR.G5348 Trifolium pratense HOM05D004507 ORTHO05D004874 8.9e-18 94.4 169 38.5
A01p07760 Brassica napus HOM05D004507 ORTHO05D004874 1.5e-17 93.6 181 34.3
BraA01t00720Z Brassica rapa HOM05D004507 ORTHO05D004874 1.5e-17 93.6 181 34.3
Psat0s1742g0040 Pisum sativum HOM05D004507 ORTHO05D004874 1.5e-17 93.6 169 38.5
CsaV3_2G007890 Cucumis sativus L. HOM05D004507 ORTHO05D004874 2.0e-17 93.2 167 37.1
Lalb_Chr13g0300541 Lupinus albus HOM05D004507 ORTHO05D004874 2.0e-17 93.2 171 39.8
arahy.Tifrunner.gnm1.ann1.40EERC Arachis hypogaea HOM05D004507 ORTHO05D004874 2.6e-17 92.8 165 40.6
BcaNung02991 Brassica carinata HOM05D004507 ORTHO05D004874 4.4e-17 92.0 173 34.7
AUR62028409 Chenopodium quinoa HOM05D004507 ORTHO05D004874 4.4e-17 92.0 144 42.4
MELO3C010170.2 Cucumis melo HOM05D004507 ORTHO05D004874 4.4e-17 92.0 185 37.3
EL10Ac8g18870 Beta vulgaris HOM05D004507 ORTHO05D004874 5.8e-17 91.7 187 38.5
C01p08650 Brassica napus HOM05D004507 ORTHO05D004874 5.8e-17 91.7 181 33.7
AUR62039753 Chenopodium quinoa HOM05D004507 ORTHO05D004874 5.8e-17 91.7 144 43.1
ECA234G3792 Erigeron canadensis HOM05D004507 ORTHO05D004874 5.8e-17 91.7 185 35.7
Lsat_1_v5_gn_8_64381 Lactuca sativa HOM05D004507 ORTHO05D004874 5.8e-17 91.7 195 35.9
BolC3t21183H Brassica oleracea HOM05D004507 ORTHO05D004874 7.5e-17 91.3 183 35.5
Aa31LG2G20120 Aethionema arabicum HOM05D004507 ORTHO05D004874 9.8e-17 90.9 178 33.7
BcaC01g01152 Brassica carinata HOM05D004507 ORTHO05D004874 9.8e-17 90.9 183 35.5
A08p19250 Brassica napus HOM05D004507 ORTHO05D004874 9.8e-17 90.9 181 33.1
C03p88720 Brassica napus HOM05D004507 ORTHO05D004874 9.8e-17 90.9 183 35.5
BraA08t33886Z Brassica rapa HOM05D004507 ORTHO05D004874 9.8e-17 90.9 181 33.1
MELO3C004096.2 Cucumis melo HOM05D004507 ORTHO05D004874 9.8e-17 90.9 176 35.8
TAR383G0901 Trochodendron aralioides HOM05D004507 ORTHO05D004874 1.3e-16 90.5 182 36.8
MSTRG.6179 Avicennia marina HOM05D004507 ORTHO05D004874 1.7e-16 90.1 177 38.4
BcaC09g51830 Brassica carinata HOM05D004507 ORTHO05D004874 2.2e-16 89.7 181 33.7
BolC1t00847H Brassica oleracea HOM05D004507 ORTHO05D004874 2.2e-16 89.7 181 33.7
Lsat_1_v5_gn_7_51920 Lactuca sativa HOM05D004507 ORTHO05D004874 2.9e-16 89.4 191 35.1
Medtr4g129560 Medicago truncatula HOM05D004507 ORTHO05D004874 4.9e-16 88.6 166 39.2
Lsat_1_v5_gn_5_87560 Lactuca sativa HOM05D004507 ORTHO05D004874 6.4e-16 88.2 179 36.9
SGA_v2.0_scaffold69G23313 Striga asiatica HOM05D004507 ORTHO05D004874 6.4e-16 88.2 187 35.8
unitig_62.g23492 Utricularia gibba HOM05D004507 ORTHO05D004874 8.3e-16 87.8 161 39.8
Lalb_Chr12g0199041 Lupinus albus HOM05D004507 ORTHO05D004874 1.1e-15 87.4 173 38.2
SGA_v2.0_scaffold66G22517 Striga asiatica HOM05D004507 ORTHO05D004874 1.1e-15 87.4 174 36.8
THA.LOC104803927 Tarenaya hassleriana HOM05D004507 ORTHO05D004874 2.4e-15 86.3 178 34.3
HanXRQChr10g0306471 Helianthus annuus HOM05D004507 ORTHO05D004874 3.2e-15 85.9 181 38.1
Nitab4.5_0007380g0020 Nicotiana tabacum HOM05D004507 ORTHO05D004874 5.4e-15 85.1 185 37.3
Sed0016542 Sechium edule HOM05D004507 ORTHO05D004874 9.2e-15 84.3 177 37.3
DCAR_017942 Daucus carota HOM05D004507 ORTHO05D004874 2.0e-14 83.2 188 35.6
Lalb_Chr07g0180071 Lupinus albus HOM05D004507 ORTHO05D004874 2.7e-14 82.8 181 34.3
CANSAT11G0203 Cannabis sativa HOM05D004507 ORTHO05D004874 3.5e-14 82.4 190 33.7
MD13G1260000 Malus domestica HOM05D004507 ORTHO05D004874 3.5e-14 82.4 164 40.9
Oeu031854.1 Olea europaea HOM05D004507 ORTHO05D004874 3.5e-14 82.4 150 40.7
MSTRG.19674 Avicennia marina HOM05D004507 ORTHO05D004874 4.6e-14 82.0 174 35.1
HanXRQChr03g0066301 Helianthus annuus HOM05D004507 ORTHO05D004874 6.0e-14 81.6 157 38.9
MBI15_g25682_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 1.7e-13 80.1 180 37.8
MD16G1262200 Malus domestica HOM05D004507 ORTHO05D004874 3.0e-13 79.3 159 38.4
Os02g0178700 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 1.5e-12 77.0 163 30.1
CDE05G1486 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 7.3e-12 74.7 155 33.5
HanXRQChr09g0245171 Helianthus annuus HOM05D004507 ORTHO05D004874 7.3e-12 74.7 157 36.3
ClCG11G012600 Citrullus lanatus HOM05D004507 ORTHO05D004874 1.2e-11 73.9 133 39.1
Cc06_g14060 Coffea canephora HOM05D004507 ORTHO05D004874 1.6e-11 73.6 160 33.8
MBI14_g08083_MAGBIO Magnolia biondii HOM05D004507 ORTHO05D004874 4.7e-11 72.0 149 37.6
HanXRQChr12g0358031 Helianthus annuus HOM05D004507 ORTHO05D004874 8.0e-11 71.2 152 36.8
SHI49167 Sapria himalayana HOM05D004507 ORTHO05D004874 4.0e-10 68.9 157 34.4
CDE02G1288 Ceratophyllum demersum HOM05D004507 ORTHO05D004874 8.9e-10 67.8 155 33.5
ATR0580G302 Amborella trichopoda HOM05D004507 ORTHO05D004874 4.4e-09 65.5 186 33.9
Zm00001eb389070 Zea mays HOM05D004507 ORTHO05D004874 4.4e-09 65.5 127 33.1
Solyc07g006310.1 Solanum lycopersicum HOM05D004507 ORTHO05D004874 1.3e-08 63.9 47 70.2
CSS0033256 Camellia sinensis var. sinensis HOM05D004507 ORTHO05D004874 4.9e-08 62.0 81 40.7
Zm00001eb412560 Zea mays HOM05D004507 ORTHO05D004874 4.9e-08 62.0 160 33.8
GSVIVG01023743001 Vitis vinifera HOM05D004507 ORTHO05D004874 1.4e-07 60.5 74 45.9
SalBow1G3357 Salvia bowleyana HOM05D004507 ORTHO05D004874 5.4e-07 58.5 92 42.4
SEGI_03314 Sequoiadendron giganteum HOM05D016169 ORTHO05D004874 1.2e-06 57.4 195 29.2
Os02g0791300 Oryza sativa ssp. japonica HOM05D004507 ORTHO05D004874 1.6e-06 57.0 143 32.9


User provided reference genes

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