Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB08g36100 Brassica carinata HOM05D005586 ORTHO05D007044 0.0e+00 1227.2 642 100.0
BraA10t43568Z Brassica rapa HOM05D005586 ORTHO05D007044 0.0e+00 1155.6 643 93.8
C09p49310 Brassica napus HOM05D005586 ORTHO05D007044 0.0e+00 1149.8 647 94.4
BcaC04g19966 Brassica carinata HOM05D005586 ORTHO05D007044 0.0e+00 1147.9 649 94.0
A10p14890 Brassica napus HOM05D005586 ORTHO05D007044 0.0e+00 1132.9 644 92.1
BolC9t57782H Brassica oleracea HOM05D005586 ORTHO05D007044 0.0e+00 1120.1 647 92.9
AL8G33420 Arabidopsis lyrata HOM05D005586 ORTHO05D007044 0.0e+00 1104.7 645 90.1
AT5G57460 Arabidopsis thaliana HOM05D005586 ORTHO05D007044 0.0e+00 1104.0 649 89.7
CARHR271250 Cardamine hirsuta HOM05D005586 ORTHO05D007044 0.0e+00 1095.5 652 88.5
Aa31LG3G13340 Aethionema arabicum HOM05D005586 ORTHO05D007044 0.0e+00 1092.4 642 87.7
C03p14980 Brassica napus HOM05D005586 ORTHO05D007044 0.0e+00 1092.0 646 89.5
A03p12820 Brassica napus HOM05D005586 ORTHO05D007044 0.0e+00 1091.3 644 89.6
BolC3t13940H Brassica oleracea HOM05D005586 ORTHO05D007044 0.0e+00 1090.5 645 89.5
BraA03t10590Z Brassica rapa HOM05D005586 ORTHO05D007044 0.0e+00 1090.5 643 89.6
BcaC01g06487 Brassica carinata HOM05D005586 ORTHO05D007044 0.0e+00 1085.5 643 89.3
BcaB01g04458 Brassica carinata HOM05D005586 ORTHO05D007044 0.0e+00 1084.7 645 89.1
Carub.0008s1797 Capsella rubella HOM05D005586 ORTHO05D007044 0.0e+00 1083.6 647 88.4
Sp6g19170 Schrenkiella parvula HOM05D005586 ORTHO05D007044 6.3e-309 1063.5 645 87.8
Thhalv10015707m.g Eutrema salsugineum HOM05D005586 ORTHO05D007044 4.2e-305 1050.8 644 86.6
Aa31LG3G220 Aethionema arabicum HOM05D005586 ORTHO05D007044 3.2e-297 1024.6 645 82.5
THA.LOC104811789 Tarenaya hassleriana HOM05D005586 ORTHO05D007044 8.8e-295 1016.5 645 82.2
Cpa.g.sc95.50 Carica papaya HOM05D005586 ORTHO05D007044 1.1e-260 903.3 628 77.2
COL.COLO4_33680 Corchorus olitorius HOM05D005586 ORTHO05D007044 9.2e-260 900.2 652 73.0
Ca_21173_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 2.3e-258 895.6 650 72.0
Ca_21222_v3 Cicer arietinum L. HOM05D005586 ORTHO05D007044 2.3e-258 895.6 650 72.0
Duzib168G0896 Durio zibethinus HOM05D005586 ORTHO05D007044 3.9e-258 894.8 652 73.0
TWI60G0698 Tripterygium wilfordii HOM05D005586 ORTHO05D007044 1.5e-257 892.9 657 72.5
Prupe.2G007900 Prunus persica HOM05D005586 ORTHO05D007044 8.0e-256 887.1 655 71.8
Ciclev10007551m.g Citrus clementina HOM05D005586 ORTHO05D007044 4.0e-255 884.8 649 71.5
CANSAT11G2700 Cannabis sativa HOM05D005586 ORTHO05D007044 8.9e-255 883.6 653 70.4
Atru.chr7.639 Acer truncatum HOM05D005586 ORTHO05D007044 1.3e-253 879.8 658 71.1
Medtr4g128210 Medicago truncatula HOM05D005586 ORTHO05D007044 1.3e-253 879.8 650 70.3
Gohir.A08G084500 Gossypium hirsutum HOM05D005586 ORTHO05D007044 2.2e-253 879.0 658 70.8
Potri.006G168200 Populus trichocarpa HOM05D005586 ORTHO05D007044 2.9e-253 878.6 661 72.0
Gorai.004G099900 Gossypium raimondii HOM05D005586 ORTHO05D007044 6.4e-253 877.5 658 71.0
Psat0s509g0200 Pisum sativum HOM05D005586 ORTHO05D007044 1.4e-252 876.3 652 70.6
arahy.Tifrunner.gnm1.ann1.F5X18S Arachis hypogaea HOM05D005586 ORTHO05D007044 1.9e-252 875.9 654 70.3
ClCG06G013320 Citrullus lanatus HOM05D005586 ORTHO05D007044 3.2e-252 875.2 654 70.6
MELO3C017465.2 Cucumis melo HOM05D005586 ORTHO05D007044 4.1e-252 874.8 654 70.6
Lalb_Chr12g0199381 Lupinus albus HOM05D005586 ORTHO05D007044 7.0e-252 874.0 653 70.6
Lj4g0013239 Lotus japonicus HOM05D005586 ORTHO05D007044 1.6e-251 872.8 648 69.3
Thecc.09G173100 Theobroma cacao HOM05D005586 ORTHO05D007044 2.0e-251 872.5 630 73.7
Sabra06G0129800 Salix brachista HOM05D005586 ORTHO05D007044 2.7e-251 872.1 669 70.3
QL02p097708 Quercus lobata HOM05D005586 ORTHO05D007044 1.3e-250 869.8 648 70.8
CsaV3_1G031580 Cucumis sativus L. HOM05D005586 ORTHO05D007044 5.0e-250 867.8 655 70.1
FAN08G2362 Fragaria x ananassa HOM05D005586 ORTHO05D007044 6.6e-250 867.5 650 71.4
Glyma.17G063500 Glycine max HOM05D005586 ORTHO05D007044 8.6e-250 867.1 650 70.0
Glyma.20G083600 Glycine max HOM05D005586 ORTHO05D007044 1.1e-249 866.7 649 70.1
Sed0016049 Sechium edule HOM05D005586 ORTHO05D007044 1.9e-249 865.9 656 70.4
RcHm_v2.0_Chr4g0402481 Rosa chinensis HOM05D005586 ORTHO05D007044 7.3e-249 864.0 647 70.5
Sed0005590 Sechium edule HOM05D005586 ORTHO05D007044 1.6e-248 862.8 653 70.6
FAN18G4074 Fragaria x ananassa HOM05D005586 ORTHO05D007044 4.7e-248 861.3 651 70.8
FvH4_5g27790 Fragaria vesca HOM05D005586 ORTHO05D007044 1.1e-247 860.1 651 70.7
Phvul.003G146100 Phaseolus vulgaris HOM05D005586 ORTHO05D007044 1.8e-247 859.4 648 70.4
CiPaw.07G192200 Carya illinoinensis HOM05D005586 ORTHO05D007044 3.1e-247 858.6 654 70.3
Dinv41251 Davidia involucrata HOM05D005586 ORTHO05D007044 1.3e-245 853.2 642 70.7
Eucgr.C02307 Eucalyptus grandis HOM05D005586 ORTHO05D007044 3.7e-245 851.7 664 68.1
PGR102G3328 Punica granatum HOM05D005586 ORTHO05D007044 3.7e-245 851.7 651 69.7
Haze_22099 Corylus avellana HOM05D005586 ORTHO05D007044 3.5e-243 845.1 656 68.3
Lj9P685T24 Lonicera japonica HOM05D005586 ORTHO05D007044 6.0e-243 844.3 651 68.5
VMungo1215G0758 Vigna mungo HOM05D005586 ORTHO05D007044 1.0e-242 843.6 634 70.7
Aqoxy7G02326 Aquilegia oxysepala HOM05D005586 ORTHO05D007044 2.3e-242 842.4 653 68.1
Cfa013507 Carpinus fangiana HOM05D005586 ORTHO05D007044 3.9e-242 841.6 658 67.6
Dinv25464 Davidia involucrata HOM05D005586 ORTHO05D007044 8.6e-242 840.5 643 70.3
MD13G1254800 Malus domestica HOM05D005586 ORTHO05D007044 3.6e-240 835.1 645 70.4
Manes.14G153700 Manihot esculenta HOM05D005586 ORTHO05D007044 4.7e-240 834.7 640 70.0
DCAR_017968 Daucus carota HOM05D005586 ORTHO05D007044 6.2e-240 834.3 647 69.2
CSS0030464 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 3.4e-238 828.6 649 68.6
Cc06_g13260 Coffea canephora HOM05D005586 ORTHO05D007044 3.4e-238 828.6 655 68.5
TAR626G0800 Trochodendron aralioides HOM05D005586 ORTHO05D007044 1.3e-237 826.6 652 67.0
Rhsim07G0149700 Rhododendron simsii HOM05D005586 ORTHO05D007044 1.7e-237 826.2 642 68.7
TAR383G0761 Trochodendron aralioides HOM05D005586 ORTHO05D007044 2.2e-237 825.9 654 67.9
TPR.G5407 Trifolium pratense HOM05D005586 ORTHO05D007044 2.9e-237 825.5 588 72.8
MSTRG.6212 Avicennia marina HOM05D005586 ORTHO05D007044 5.4e-236 821.2 652 67.2
Peaxi162Scf00231g00064 Petunia axillaris HOM05D005586 ORTHO05D007044 6.0e-235 817.8 654 67.1
PGSC0003DMG400011415 Solanum tuberosum HOM05D005586 ORTHO05D007044 1.0e-234 817.0 653 67.2
Nitab4.5_0000730g0080 Nicotiana tabacum HOM05D005586 ORTHO05D007044 3.0e-234 815.5 654 66.8
Solyc10g078790.1 Solanum lycopersicum HOM05D005586 ORTHO05D007044 5.1e-234 814.7 652 66.9
Sopen10g029410 Solanum pennellii HOM05D005586 ORTHO05D007044 1.9e-233 812.8 652 66.7
PSO170G6484 Papaver somniferum HOM05D005586 ORTHO05D007044 3.3e-233 812.0 654 67.0
Oeu025223.1 Olea europaea HOM05D005586 ORTHO05D007044 4.3e-233 811.6 646 66.1
Sc08g0005320 Simmondsia chinensis HOM05D005586 ORTHO05D007044 9.6e-233 810.4 653 67.4
ECA234G4574 Erigeron canadensis HOM05D005586 ORTHO05D007044 2.1e-232 809.3 652 67.5
Ah.14g083790 Amaranthus hybridus HOM05D005586 ORTHO05D007044 4.7e-232 808.1 653 66.8
Lj7P472T26 Lonicera japonica HOM05D005586 ORTHO05D007044 6.2e-232 807.7 652 66.4
Oeu009835.1 Olea europaea HOM05D005586 ORTHO05D007044 1.4e-231 806.6 647 65.5
CSS0000496 Camellia sinensis var. sinensis HOM05D005586 ORTHO05D007044 4.0e-231 805.1 649 67.2
Hma1.2p1_1025F.1_g249260 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 4.4e-230 801.6 576 72.9
Gohir.D08G094100 Gossypium hirsutum HOM05D005586 ORTHO05D007044 7.6e-230 800.8 658 66.4
PSO063G4043 Papaver somniferum HOM05D005586 ORTHO05D007044 9.9e-230 800.4 654 65.9
CAN.G1161.32 Capsicum annuum HOM05D005586 ORTHO05D007044 2.9e-229 798.9 656 66.2
SHI41749 Sapria himalayana HOM05D005586 ORTHO05D007044 6.4e-229 797.7 660 65.0
SGA_v2.0_scaffold17G07909 Striga asiatica HOM05D005586 ORTHO05D007044 1.1e-228 797.0 644 67.5
BcaC01g06491 Brassica carinata HOM05D005586 ORTHO05D007044 1.4e-228 796.6 627 71.0
Migut.J01477 Erythranthe guttata HOM05D005586 ORTHO05D007044 5.4e-228 794.7 655 64.1
Nitab4.5_0004134g0010 Nicotiana tabacum HOM05D005586 ORTHO05D007044 7.1e-228 794.3 647 66.8
Lsat_1_v5_gn_5_84680 Lactuca sativa HOM05D005586 ORTHO05D007044 1.6e-227 793.1 654 65.6
EL10Ac8g18286 Beta vulgaris HOM05D005586 ORTHO05D007044 3.5e-227 792.0 657 66.8
Nitab4.5_0000455g0040 Nicotiana tabacum HOM05D005586 ORTHO05D007044 6.6e-226 787.7 643 66.4
GSVIVG01029208001 Vitis vinifera HOM05D005586 ORTHO05D007044 9.6e-225 783.9 645 66.2
Nn4g25000 Nelumbo nucifera HOM05D005586 ORTHO05D007044 8.1e-224 780.8 633 67.1
MBI03_g13495_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 2.9e-221 772.3 659 63.3
CDE04G2484 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 1.0e-210 737.3 649 60.9
MBI14_g17367_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.9e-209 733.0 649 60.9
PSO541G5977 Papaver somniferum HOM05D005586 ORTHO05D007044 1.9e-209 733.0 658 62.3
MD13G1254300 Malus domestica HOM05D005586 ORTHO05D007044 3.3e-209 732.3 642 63.6
AUR62021301 Chenopodium quinoa HOM05D005586 ORTHO05D007044 2.9e-205 719.2 654 60.7
AUR62033219 Chenopodium quinoa HOM05D005586 ORTHO05D007044 2.9e-205 719.2 654 60.7
ATR0618G120 Amborella trichopoda HOM05D005586 ORTHO05D007044 1.2e-195 687.2 651 58.1
BcaC01g06494 Brassica carinata HOM05D005586 ORTHO05D007044 2.7e-195 686.0 625 65.4
SalBow6G0691 Salvia bowleyana HOM05D005586 ORTHO05D007044 4.6e-195 685.3 645 58.6
SalBow1G5715 Salvia bowleyana HOM05D005586 ORTHO05D007044 1.0e-194 684.1 652 59.0
SEGI_38070 Sequoiadendron giganteum HOM05D005586 ORTHO05D007044 1.0e-189 667.5 656 56.2
Actinidia15717 Actinidia chinensis HOM05D005586 ORTHO05D007044 2.5e-188 662.9 632 59.5
Actinidia14649 Actinidia chinensis HOM05D005586 ORTHO05D007044 3.1e-183 646.0 548 65.0
Os08g0243900 Oryza sativa ssp. japonica HOM05D005586 ORTHO05D007044 1.3e-181 640.6 650 55.8
Zm00001eb414690 Zea mays HOM05D005586 ORTHO05D007044 4.2e-180 635.6 652 54.6
MBI18_g04576_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.0e-178 630.9 642 56.5
Hma1.2p1_3184F.1_g333760 Hydrangea macrophylla HOM05D005586 ORTHO05D007044 1.7e-176 623.6 644 57.1
CDE02G2425 Ceratophyllum demersum HOM05D005586 ORTHO05D007044 3.4e-161 572.8 656 50.8
MBI16_g35931_MAGBIO Magnolia biondii HOM05D005586 ORTHO05D007044 1.8e-151 540.4 553 56.8
Mapoly0111s0055 Marchantia polymorpha HOM05D005586 ORTHO05D007044 1.5e-145 520.8 677 46.7
Pp3c25_4850 Physcomitrium patens HOM05D005586 ORTHO05D007044 8.9e-138 495.0 676 43.5
AagrBONN_evm.TU.Sc2ySwM_368.670 Anthoceros agrestis HOM05D005586 ORTHO05D007044 4.4e-121 439.5 681 41.3
COL.COLO4_04392 Corchorus olitorius HOM05D005586 ORTHO05D007044 7.3e-116 422.2 349 64.2
unitig_899.g14852 Utricularia gibba HOM05D005586 ORTHO05D007044 4.2e-103 379.8 333 65.2
unitig_899.g14851 Utricularia gibba HOM05D005586 ORTHO05D007044 7.4e-92 342.4 243 69.5
SMO228G0090 Selaginella moellendorffii HOM05D005586 ORTHO05D007044 1.5e-89 334.7 389 48.3
HPP92_000781 Vanilla planifolia HOM05D005586 ORTHO05D007044 6.1e-62 243.0 329 48.0
CBR_g26159 Chara braunii HOM05D005586 ORTHO05D000002 1.3e-43 182.2 563 28.8
QL11p053068 Quercus lobata HOM05D005586 ORTHO05D007044 1.3e-40 172.2 113 77.0
MD16G1258000 Malus domestica HOM05D005586 ORTHO05D007044 3.7e-35 154.1 118 66.9
MD16G1258100 Malus domestica HOM05D005586 ORTHO05D007044 8.3e-27 126.3 113 64.6
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 1.1e-13 82.8 94 52.1
CBR_g26157 Chara braunii HOM05D005586 ORTHO05D007044 3.5e-09 67.8 95 38.9
MBI16_g35933_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009834 1.7e-08 65.5 44 70.5


User provided reference genes

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